BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495072
Length=2274
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50160.1 | Symbols: ATFRO8, FRO8 | ferric reduction oxidase ... 3603 0.0
> AT5G50160.1 | Symbols: ATFRO8, FRO8 | ferric reduction oxidase
8 | chr5:20415771-20418742 FORWARD LENGTH=2408
Length=2408
Score = 3603 bits (1951), Expect = 0.0
Identities = 2162/2267 (95%), Gaps = 2/2267 (0%)
Strand=Plus/Plus
Query 1 AAAACCACTTTTCAAACATTGGAACTATCTAAGTATTGAACACAAAGATGGCCAAAGTGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 AAAACCACTTTTCAAACATTGGAACTATCTAAGTATTGAACACAAAGATGGCCAAAGTGT 74
Query 61 TGACACTACTTGTTCTCCGACTACTCATGAACCTCTTACTTATCGGTTGGATTTCTCTCT 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TGACACTACTTGTTCTTCGACTACTCATGAACCTCTTACTTATCGGTTGGATTTCTCTCT 134
Query 121 GGATCATCAAACCCACGACCCTATGGATACAATCTTGGCGTCAAGCTGAAGATACCGCCA 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 135 GGATCATCAAACCCACGACCATATGGATACAATCTTGGCGTCAAGCTGAAGATACCGCCA 194
Query 181 AACACACTTTCTTCGGCTATTACGGTCTCAACTTTGCCGTATTCTCATTTCCTCCTATTG 240
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 195 GACACACTTTCTTCGGCTATTACGGTCTCAACTTTGCCGTATTTTCATTCCCTCCTATTG 254
Query 241 CTCTCTCTATCGTTGGACTCATTTACTTGAGTTTACTGCCACAACATCATCATCCAACAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 CTCTCTCTATCGTTGGACTCATTTACTTGAGTTTACTGCCACAACATCATCATCCAACAA 314
Query 301 GAGGAGGTAGGAGTGCAGCTATTACTGTCTCAAGACCAGCCATTGTCAATAGCTTCATTG 360
||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 315 GAGGAGGGAGGGGTGCAGCTATTACTGTCTCAAGACCAGCCATTATCAATAGCTTCATTG 374
Query 361 GAATTGTGTCTTGTTTCGAGATACTTGCTCTTCTTTTGTTCCTCCTCTTTCTTGCTTGGA 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 375 GAATTGTGTCTTGTTTCGAGATACTTGCTCTTCTTTTGTTCCTACTCTTTCTTGCTTGGA 434
Query 421 ACTTCTATGCCCGCGTCTCTAACGACTTCAAGAAGCTGATGCCTGTCAAAACCCTGAATC 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 435 ACTTCTATGCCCGTGTCTCTAACGACTTCAAGAAGCTGATGCCTGTCAAAACCATGAATC 494
Query 481 TTAACTTATGGCAGCTTAAGTACTATAGAGTTGCTACAAGGTTCGGTCTATTAGCCGAAG 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 495 TTAACTTATGGCAGCTTAAGTACTATAGAGTTGCTACAAGGTTTGGTCTATTAGCCGAAG 554
Query 541 CATGTCTCTCTCTTCTTCTTTTCCCTGTCTTGAGGGGACTCTCGATGTTCCGGTTACTCA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 555 CATGTCTCTCTCTTCTTCTTTTCCCTGTCTTGAGGGGACTCTCGATGTTCCGGTTACTTA 614
Query 601 ACATTGAGTTTGCAGCTTCTGTAAAATATCATGTGTGGTTCGGGACCGGTTTGATCTTCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 ACATTGAGTTTGCAGCTTCTGTAAAATATCATGTGTGGTTCGGGACCGGTTTGATCTTCT 674
Query 661 TTTCTTTGGTTCATGGTGGAAGCACTCTGTTTATATGGACTATTACTCATCACATTGAAG 720
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 675 TTTCTTTGGTTCATGGTGGAAGCACTCTGTTCATATGGACTATTACTCATCACATTGAAG 734
Query 721 AAGAGATTTGGAAATGGCAGAGAACGGGTCGGGTATATATAGCTGGACTGATCAGCCTTG 780
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 735 AAGAGATTTGGAAATGGCAGAGAACGGGTCGGGTATATGTAGCTGGACTAATCAGCCTTG 794
Query 781 TAACAGGATTACTGATGTGGATCACATCACTTCCTCAAATTCGAAGGAAAAACTTTGAAG 840
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 795 TAACAGGATTACTGATGTGGATCACATCACTTCCTCAAATTCGAAGGAAAAATTTTGAAG 854
Query 841 TCTTCTATTACACACACCATTTGTATATAGTTTTTCTTGTAGCTTTCTTGTTTCATGCCG 900
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 TTTTCTATTACACACACCATTTGTATATAGTTTTTCTTGTAGCTTTCTTGTTTCATGCCG 914
Query 901 GTGATCGTCACTTTTACTGGGTGCTCCCCGGCATCTTTCTGTTTGGACTAGACAAGATAC 960
||||||||||||| |||||||| ||||| ||||| ||||| |||||||| ||||||||||
Sbjct 915 GTGATCGTCACTTCTACTGGGTCCTCCCAGGCATGTTTCTCTTTGGACTCGACAAGATAC 974
Query 961 TTCGGAGTGTTCAATCGCGATCTGAAAGCTGCGTTCTTTCCGCCAATCTCTTCTCTTGTA 1020
|||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 975 TTCGGATTGTTCAATCACGATCTGAAAGCTGCATTCTTTCCGCCAATCTCTTCTCTTGTA 1034
Query 1021 AAGCCATTGAGCTTGTCTTGCCAAAGGACCCAAGGCTTAACTATGCACCGTCGAGTTTTA 1080
||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 1035 AAGCCATTGAGCTTGTCTTGCCAAAGGACCCAATGCTTAACTATGCACCATCAAGTTTTA 1094
Query 1081 TATTCTTGAACATTCCGTTGGTCTCACGGTTTCAATGGCATCCCTTTAGTATTATATCGA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1095 TATTCTTGAACATTCCGTTGGTCTCACGGTTTCAATGGCATCCCTTTAGTATTATCTCAA 1154
Query 1141 GCTCTAGTGTAGACAAACACACATTGTCTATTATGATAAAATGTGAGGGGGATTGGACAA 1200
|||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||
Sbjct 1155 GCTCGAGTGTAGACAAACACTCATTGTCTATTATGATGAAATGTGAGGGAGATTGGACAA 1214
Query 1201 ATTCAGTTTATAACAAAGTAGAAGAAGCGGCAAATTCTGAAAAGAAGATTAACAACATAA 1260
|||| |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1215 ATTCTGTTTATAACAAAATAGAAGAAGCGGCAAATTGTGAAAATAAGATTAACAACATAA 1274
Query 1261 CCGTAAGAGTAGAAGGTCCTTATGGACCTGCCTCGGTAGATTTTCTCAGGTATGATAATC 1320
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 TCGTAAGAGTGGAAGGTCCTTATGGACCTGCCTCGGTAGATTTTCTCAGGTATGATAATC 1334
Query 1321 TGTTTCTTGTGGCGGGAGGGATCGGGATTACGCCATTTCTAAGTATTTTGAAGGAACTCG 1380
||||||||||||||||||| || ||||| || ||||||||||| |||||||| ||||| |
Sbjct 1335 TGTTTCTTGTGGCGGGAGGAATTGGGATCACACCATTTCTAAGCATTTTGAAAGAACTAG 1394
Query 1381 CGTGCAAAAACCGACTCAAATCTCCCAAGAGAGTGCAGCTTGTGTTTGCGGTTAGGACAT 1440
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 CGAGCAAAAACCGACTCAAATCTCCCAAGAGAGTGCAGCTTGTGTTTGCGGTTAGGACAT 1454
Query 1441 TCCAAGATCTTAACATGTTGCTTCCAATATCCTCTATACTCTTTAACCCAATCCACAACT 1500
||||||||||||||||||||||||| ||| | |||||| |||||||||||||| ||||||
Sbjct 1455 TCCAAGATCTTAACATGTTGCTTCCGATAGCATCTATAATCTTTAACCCAATCTACAACT 1514
Query 1501 TAAACCTCAAGTTAAAAGTTTTTGTCACTCAAGaaaaaaaaaCTTCCAATGGTACACCAA 1560
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 1515 TAAACCTCAAGTTAAAAGTTTTTGTCACCCAAGAAAAAAAGCCTTCCAATGGTACAACAA 1574
Query 1561 CATTGCAAGAGTTCTTGTCTCAATCACAAGTTCAGTCTATTCACTTCAAAACCGACGAGG 1620
|| |||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 1575 CACTGCAAGAGTTCTTGGCTCAATCACAAGTTCAGTCTATTCACCTCGGAACCGACGAGG 1634
Query 1621 ACTATTCAAGATTCCCAATTCGTGGGCCAGAAAATTTCAGATGGCTTGCCACATTAGTCC 1680
|||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 1635 ACTATTCAAGATTCCCGATTCGCGGGCCTGAAAGTTTCAGATGGCTTGCCACATTAGTCC 1694
Query 1681 TTATAACCGTGCTTACGTTTCTCGGCTTCTTGGTAGGTCTAAGCCATATCTTTATACCTT 1740
| |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1695 TCATAACCGTGCTTACGTTTCTCGGCTTCTTGATAGGTTTAAGCCATTTCTTTATACCTT 1754
Query 1741 CTGAACACAAGAATCATTCAGGGGTTATGAAGTTAGCTGCTTCTGGAGCAATGAAGACAG 1800
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1755 CTGAACACAAGAATCATTCAGGGGTTATGAAGTTAGCTGCTTCAGGAGCAATGAAGACAG 1814
Query 1801 CTAAAGAAAAGGTTCCTTCATGGGTTCCAGATTTGATTATCATTGTCTCTTACGTTATAG 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 CTAAAGAAAAGGTTCCTTCATGGGTTCCAGATTTGATTATCATTGTCTCTTACGTTATAG 1874
Query 1861 CTATCACAATTGGTGGTTTGGCTGCAACAATTCTTCCATGGAGAGGAAAACACAGAGAGG 1920
||||| || |||||||||| |||||||| ||||| | | ||||| ||||||| | ||| |
Sbjct 1875 CTATCTCAGTTGGTGGTTTCGCTGCAACTATTCTACAACGGAGACGAAAACATAAAGAAG 1934
Query 1921 CACCAAGAATGTCTAAAGAAGAAGTAATTAAACCAGGGGAAAGAAACTTCACCGAGTTAA 1980
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1935 CACCAAGAATGTCTAAAGAAGTAGTAATTAAACCAGAGGAAAGAAACTTCACCGAGTTAA 1994
Query 1981 AACCAATTCCTCTTATTGAGGAACATGAGATACATACCGGAGAAAGGCCAAAACTCGAAG 2040
||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1995 AACCAATTCCTATTACTGAGGAACATGAGATACATATCGGAGAAAGGCCAAAACTCGAAG 2054
Query 2041 AGATAATGTCGGAGTTTGAGAAGAACTTGAGAGGATGGTCGAGTATAGGAGTGTTGGTAT 2100
|||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||
Sbjct 2055 AGATAATGTCGGAGTTTGAGAAGAACTTGAGAGGATGGTCGAGTGTTGGAGTTTTAGTAT 2114
Query 2101 GTGGACCAGAGTCAATGAAAGAAGATGTGGCATCGATGTGTCGCAAATGGCCTCAGTGTT 2160
|||||||||||||| ||||||||| ||||||||| ||||||||| |||||||||||||||
Sbjct 2115 GTGGACCAGAGTCAGTGAAAGAAGCTGTGGCATCAATGTGTCGCCAATGGCCTCAGTGTT 2174
Query 2161 TTGGAGTAGAGGATTCAGGAAGAAACAGAATGAAGATGAATCTAAATTTTCATTCTCTTA 2220
|||||||||| |||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 2175 TTGGAGTAGAAGATTTAAGAAGAAGCAGAATGAAGATGAATCTAAATTTTCATTCTCTTA 2234
Query 2221 ATTTTAACCTCTAATCTAA-AAGCATTTTCTAAGATTGTATCGTTAG 2266
|||| |||||||||||||| || ||||||||||| ||||||||||||
Sbjct 2235 ATTTCAACCTCTAATCTAACAA-CATTTTCTAAGTTTGTATCGTTAG 2280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112850825160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5