BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495073
Length=3158
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50170.1 | Symbols: | C2 calcium/lipid-binding and GRAM dom... 4843 0.0
> AT5G50170.1 | Symbols: | C2 calcium/lipid-binding and GRAM domain
containing protein | chr5:20421073-20425586 FORWARD LENGTH=3223
Length=3223
Score = 4843 bits (2622), Expect = 0.0
Identities = 2986/3164 (94%), Gaps = 15/3164 (0%)
Strand=Plus/Plus
Query 1 CTCTCTCGCTTCTCTCTCAAATCGATGAGGCTCTACGTCTACATATTACAAGCCAAAGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 54 CTCTCTCGCTTCTCTCTCAAATCGATGAGGCTCTACGTCTACATATTACAAGCCAAAGAT 113
Query 61 TTACCAGCCAAAGAGACATTCGCGAAGCTTCACGTTGGGAAACACAAGTCCAAAACGAGA 120
|||||||| |||||||||||||| |||||||||||||||| ||||||||| |||||||||
Sbjct 114 TTACCAGCGAAAGAGACATTCGCTAAGCTTCACGTTGGGAGACACAAGTCTAAAACGAGA 173
Query 121 GTCGCGAGAGACACTTCGTCACCGATCTGGAATGAGGAATTCGTTTTTCGAATCAGTGAC 180
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 174 GTCGCGAGAGATACTTCGTCACCGATCTGGAACGAGGAATTCGTTTTTCGAATCAGTGAT 233
Query 181 GTCGACGAAGGTGATGATGTTGTTGTATCGATTCTTCACCATGAGCAGCAGCAAGATCAT 240
|||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 234 GTCGACGAAGGTGATGATGTCGTTGTATCGATTCTTCACCAT--G-AGCAGCAAGATCAT 290
Query 241 CAGTCTATTGTTTCCACCACCGGATTAATTGGTAAAGTTCGGATTCCGCTTTGTTCCATT 300
||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 291 CAGTCTATTGTTT---CCACCGGTTTAATTGGTAAAGTTCGGATTCCGCTTACTTCCGTT 347
Query 301 GCTGCTGAAGAGAATCAAACTTTGTTGCCGACTTGGTTTGTTATTGAGAAGCTTAGTGAT 360
||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 348 GCTGCTGAAGAGAATCAAACTTTGTTGCCGACTTGGTTTGTCATTGAGAAACCTAGTGAT 407
Query 361 GGCAAGTTCGTTAACATTGACTGTGGTAAAATTCTTCTGAGTTTGTCTTTGCAAGGGAAG 420
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 408 GGCAAGTTCGTTAACATTGAATGTGGGAAAATTCTTCTGAGTTTGTCTTTGCAAGGGAAA 467
Query 421 TGGGAAAGTACATCTGGTGAAAAGGTTCTTAATGATAAGCAGG--A-TATTAACTTGGAG 477
||||||||||| |||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 468 TGGGAAAGTACCTCTGGTGAGAAGGTTCTTAATGATAAGCAGGATATTATTAACTTGGAA 527
Query 478 GGTGTGAAAGAACTCGAAGGATCGCCGAAAGATTTGATATCTTCTAAAGATGGGAGACGG 537
|||||||||||||||||||||||||| ||||||||||| || || | |||||||| ||||
Sbjct 528 GGTGTGAAAGAACTCGAAGGATCGCCTAAAGATTTGATCTCCTCCAGAGATGGGAAACGG 587
Query 538 CGTAAACACCATGATGGGAAGCATATAATGAAGAATTTTGTCAACCAGATTGACAAGCTT 597
||||||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||||
Sbjct 588 CGTAAACACCATGATGGGAAGCACATAATGAAGAATATTGTGAACCACATTGACAAGCTT 647
Query 598 TTTCATAAGAAAGAGGAAATTTCTAAGAGGCTTCATGATGATTCATCGGTAGGTCAAACC 657
||||||||||||||||| || |||||||| || |||||||| || || ||||| ||||
Sbjct 648 TTTCATAAGAAAGAGGAGATCTCTAAGAGACTCCATGATGAGTCTTCAGTAGGACAAAGT 707
Query 658 GTTAACTCCAATTATGAGGATGCTACTGACAAATGTTCTTCCTCTGCTACTTGTACTGGC 717
|| ||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 708 GTAAACTCAAATTATGAGGATGCCACTGACCAATGTTCTTCCTCTGCTACTTGTACTGGC 767
Query 718 TTTGAGGAAGGCCTTGACCTGATGCAGTCTAGTGACAGCGAAAGAGAAGAAATGCCTGAG 777
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 768 TTTGAGGAAGGTCTTGACCTGATGCAGTCTAGTGATAGCGAAAGAGAAGAAATGCCTGAG 827
Query 778 AATCTT-CAGGGGGGAATTCTTCTTGATCAGAAATATTTAGTTTCACCTTGTGATCTTAA 836
|||||| || |||||| ||||| ||||||||||||||||||| ||||| ||||| |||||
Sbjct 828 AATCTTACA-GGGGGAGTTCTTGTTGATCAGAAATATTTAGTCTCACCCTGTGAACTTAA 886
Query 837 CAAATTTCTTTTCACGCCTAGTTCGCAATTTAGGAAAGAATTGGCGGAACTTCAAGGTCT 896
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 887 CAAATTTCTTTTTACGCCAAGTTCGCAATTTAGGAAAGAATTGGCTGAACTTCAAGGTCT 946
Query 897 ATCGGATGTACAGGAAGGGCCTTGGACAGTGATGCAAGAAGATACTCCTCGTCTAACACG 956
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 947 ATCAGATGTACAGGAAGGGCCTTGGACAATGATGCAAGAAGATACTCCTCGTCTAACACG 1006
Query 957 GGTTGTTACATACATGAGAGCTGCAACAAAGATGGTCAAAGCTGTAAAAGCTACTGAGAA 1016
||||||||||||||||||||||||||| |||||||||||||| |||||||| || || ||
Sbjct 1007 GGTTGTTACATACATGAGAGCTGCAACGAAGATGGTCAAAGCAGTAAAAGCAACAGAAAA 1066
Query 1017 TCAAGTTTATCGGAAAGCGAGCGGGAAGCAGTTTGCTGTTTTTGTTAGTGTTAGCACACC 1076
||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1067 TCAAGTTTACCGGAAAGCTAGCGGGAAGCAGTTTGCTGTATTTGTTAGTGTAAGCACACC 1126
Query 1077 AGATGTTCCATATGGAAATACCTTTAAAATAGAGTTGCTTTACAAGATACTACCTGAAAC 1136
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1127 AGATGTTCCCTACGGAAATACCTTCAAAATAGAGTTGCTTTACAAGATACTACCTGAAAC 1186
Query 1137 TGAGCCAACTGCTGGTGGGGAATCTTCTCGACTGATCATATCATGGGGGATTCAATTTAA 1196
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1187 AGAGCCAACTGCTGGTGGGGAAGCTTCTCGACTGATCATATCATGGGGGATTCAATTTAG 1246
Query 1197 TCAAAGTACTATAATGAAAGGTATGATTGAAGGAGGTGCTAGGCAAGGGCTGAGAGAGAG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1247 TCAAAGTACTATAATGAAAGGTATGATTGAAGGAGGTGCTAGGCAAGGGCTGAAAGAAAG 1306
Query 1257 CTTTGAACAATTTGCTAATCTCCTGGCTAAGACTTACAAAACTCTTGACCCGGCTGTTGT 1316
||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1307 CTTTGAACAATTTTCTAATCTCCTGGCTAAGACTTATAAAACTCTTGATCCGGCTGTTGT 1366
Query 1317 ATTGGACAAAGACCAGGTTATAGCAACAGTGCAGTCAGAACAAAAGACTGATTTGAAATC 1376
||||||||| || |||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1367 ATTGGACAAGGAGCAGGTTATAGCAACAGTGCAGTCAGAGCCAAAGACTGATTTGAAATC 1426
Query 1377 AGCTTTTTTATACTTCTGGAGTTCCTCTGTCATCTGTGCTGTTCTTTTGTCTGTATATGT 1436
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 AGCTTTTCTATACTTCTGGAGTTCCTCTGTCATCTGTGCTGTTCTTTTGTCTGTATATGT 1486
Query 1437 TGTAGTTCATATGCTGCACTGTGAGCCCAGCAAAATCCAAGGGTTTGAATTTTATGGCCT 1496
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1487 TGTAGTTCATATGCTGCACTGTGAGCCCAGCAAAATCCAAGGGTTTGAATTCTATGGGCT 1546
Query 1497 TGATTTGCCTGATAGTTTCGGAGAGCTATTAAGTAGTGGAATACTAGTTCTTCTTTTGGA 1556
|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 1547 TGATTTGCCTGATAGTTTTGGAGAGCTATTCAGTAGTGGAATACTTGTTCTTCTTCTGGA 1606
Query 1557 GCGTGTTTATATGATGACTGTGCACTTCATACAAGCTAGATTGCATCGAGGAAGAGATCA 1616
||||||||| || ||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1607 GCGTGTTTACATAATGACTGTGCACTTCGTACAAGCTAGATTACATCGAGGAAGAGATCA 1666
Query 1617 GGAAGTCAAAGCAAATGGTAAGGGATGGATTCTGACAATAGCTTTAATTAAGGGAACAAA 1676
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1667 GGGAGTCAAAGCAAATGGTAAGGGGTGGATTCTGACAATAGCTTTAATTAAGGGAACAAA 1726
Query 1677 TTTGGCTTCAGTGGAAGCAACAGAGCTCTTTGATCCCTATGTTGTTTTCACTTGCAATGG 1736
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1727 TTTGGCTTCAGTGGAAGCAACAGAGCTTTTTGATCCCTATGTTGTTTTCACTTGCAATGG 1786
Query 1737 GAAAACAAGAACTAGCTCTGTCAAACTTCAAGCTCAGGATCCGCAGTGGAATGAGGTAAT 1796
|||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1787 GAAAACAAGAACAAGTTCTGTCAAACTTCAAGCCCAGGATCCTCAGTGGAATGAGGTAAT 1846
Query 1797 CGAGTTTGATGCAATGGAGGAACCACCATCGGTATTAGATGTAGAGGTATTTGATTTTGA 1856
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1847 CGAGTTTGATGCAATGGAGGAACCACCATCGGTATTAGATGTGGAGGTATTTGATTTTGA 1906
Query 1857 TGGTCCATTTGACCAGGGTGCTTCTCTTGGGCATGCAGAGGTCAATTTCTTGAAACATAC 1916
|||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1907 TGGTCCATTTGACCAGGGGGCTTCTCTTGGTCATGCAGAGATCAATTTCTTGAAACATAC 1966
Query 1917 AGCCGATGAACTAGCGGACTTGAGTGTTCCTCTAGTTGGTCATCATGCTCAAGCCTCCCA 1976
|||||||||||| || |||||||||||| ||||||||||| ||||||||||||| || ||
Sbjct 1967 AGCCGATGAACTTGCTGACTTGAGTGTTGCTCTAGTTGGTAATCATGCTCAAGCGTCTCA 2026
Query 1977 GTCAAAGTTACAATTGCGAATTTTTCTGGAAAACAAGAACGGGGTTGAAACAATGAAGGA 2036
||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2027 GTCGAAGTTACAATTGAGAATTTTCCTGGAAAACAAGAACGGGGTTGAAACAATGAAGGA 2086
Query 2037 TTACTTGAGTAAGGTGGAAAAGGAAGTTGGCAAGAAGTTGAACATTCGGTCACCCCAGAA 2096
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2087 TTACTTGAGTAAGGTGGAAAAGGAAGTCGGCAAGAAGTTGAACATTCGGTCACCACAGAA 2146
Query 2097 GAACTCCGCTTTCCAGAAACTGTTTGGTCTGCCCCATGAAGAATTTCTTCTCAAAGAATA 2156
|||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 2147 GAACTCTGCTTTCCAGAAACTGTTTGGTTTGCCACATGAAGAATTTCTTCTCAAAGAATA 2206
Query 2157 TACGTGTTACTTGAAGAGAAAACTGCCTGTGCAGGGCAAGCTTTTTCTGTCTGCTAGAAT 2216
||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 2207 TACTTGTTACTTGAAGAGAAAACTTCCGGTGCAGGGCAAGCTCTTTCTGTCTGCTAGAAT 2266
Query 2217 TGTGGCGTTCTACTCAAATGTGTTTGGACACAAGACAAAGTTTTACTTTCTT-TGGGAAG 2275
||||||||||||||||||||| ||||||||||||||||||||||| |||| | |||||||
Sbjct 2267 TGTGGCGTTCTACTCAAATGTATTTGGACACAAGACAAAGTTTTA-TTTCCTCTGGGAAG 2325
Query 2276 ATATTGATGACATCCAAGTGCTTCCCCCAACTTTTGCTTCGTTAGGAAGCCCTTTACTAC 2335
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 2326 ATATTGATGACATCCAAGTGCTTCCCCCAACTTTTGCTTCATTAGGAAGCCCTTTGCTAC 2385
Query 2336 TCATTATTCTGAAAAAGAACCGAGGTCTTGATGCAAAGCATGGGGCTAAATCTCAGGATG 2395
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2386 TCATTATTCTGAAAAAGAACCGAGGTCTTGATGCAAAGCATGGAGCTAAATCTCAGGATG 2445
Query 2396 ATGAAGGAAGACTTTGGTTCTATTTCCAGTCATTTGTGTCATTTGATGCGACCAGCAGGA 2455
||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2446 ATGAAGGAAGACTTTCGTTCTATTTCCAGTCATTTGTATCATTTGATGCCACCAGCAGGA 2505
Query 2456 CAATCATGGCTTTGTGGAAAACAAGGACGTTAAGTGTAGATCATAGAGCACAAATAGCAG 2515
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 2506 CAATCATGGCTTTGTGGAAAACAAGGACGTTAAGTGTGGATCATAGAGCACAAATAGTAG 2565
Query 2516 AAGAAGACCAAGATGTGGCAGATCCTTTCCTCTTACCTGAAGCTGGTGCAGTTGTTTCAG 2575
|||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||
Sbjct 2566 AAGAAGACCAAGATGTGGCAGATCCTTTCCTCTTGCCTGAAGCTGTTACAGTTGTTTCAG 2625
Query 2576 ATACGGATGCATTAGTGATGTCAAAAGTGTACATGTGTGATCTACCTTGCGATGTAGAAT 2635
|| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2626 ATGCGGATGCATTAATGATGTCAAAAGTGTACACGTGTGATCTACCTTGCGATGTAGAAT 2685
Query 2636 TGGTAATGAAGATCTTTGGTGGAGGAGAATTGGAGCGTAAGATCATGGAGAAATCTGGAT 2695
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2686 TAGTAATGAAGATCTTTGGTGGAGGAGAATTGGAGCGTAAGATCATGGAGAAATCTGGAT 2745
Query 2696 GTCTAAGTTACGCGAGTACAACATGGGAATCTAAAAAACCAGGCA-TCTACGAAAGACGC 2754
|| | |||||||| |||||||||||||||||||||||||| || | |||||||||||||
Sbjct 2746 GTTTGAGTTACGCTAGTACAACATGGGAATCTAAAAAACCGGG-AGTCTACGAAAGACGG 2804
Query 2755 CTTTCTTACAAATACAATCACTATGTGTCTGTGTTTGGAGGCGGAGTCACCTGCACACAA 2814
||||||||||| || || ||||||||||||||||||||||| |||||||| || |||||
Sbjct 2805 CTTTCTTACAAGTATAACCACTATGTGTCTGTGTTTGGAGGTGGAGTCACATGTGCACAA 2864
Query 2815 CAGAAATCTCCAGCTCCAAATGATGAAGGCTGGATCTTGAATGAGATTGTGGCTCTCCAC 2874
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2865 CAGAAATCTCCAGCTCCAAATGATGAAGGCTGGATCTTGAATGAAATTGTGGCTCTCCAC 2924
Query 2875 GATGTTCCATTCGGAGACCATTTTCGTGTTCATATAAGGTATGAGGTGAAGAAAGCAGGA 2934
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2925 GATGTTCCATTCGGAGATCATTTTCGTGTTCATATAAGGTACGAGGTGAAGAAAGCAGGA 2984
Query 2935 TTTGATTGTAAAACAAGTAAATGCGAGGTGTATCTGAAGATCAGGTGGCTCAAAACAATA 2994
||||||||||||||||||| || || |||||| ||||||||||||||||||||||||||
Sbjct 2985 GTTGATTGTAAAACAAGTAAGTGTGAAGTGTATTTGAAGATCAGGTGGCTCAAAACAATA 3044
Query 2995 AAGTTTGAGCAAAGAATTAGCAAAAGTATAATGGAGAAATTCAGGAATCGATTCAAAGTT 3054
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3045 AAGTTTGAGCAAAGAATTAGCAAAAGTATAATGGAGAAATTTAGGAATCGATTCAAAGTT 3104
Query 3055 ATATTTGATTTGTTCCAGAAAGAATCTGTTGCAAATTCATCTTTGACACTTCTCTGACTA 3114
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3105 ATATTTGATTTGTTCCAGAAAGAATCTGTTGCAAATTCATCTTTGACACTTCTCTGACGA 3164
Query 3115 ATAAAACTATACTTGTTTTAGATCTCTTCTCATTAGTCAATATT 3158
||||||||||||||||| ||||||||||||||||| |||| |||
Sbjct 3165 ATAAAACTATACTTGTTGTAGATCTCTTCTCATTACTCAAAATT 3208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157072698533
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5