BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495074

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50175.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   571    2e-162


> AT5G50175.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G03600.1); Has 
43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr5:20428095-20428719 
FORWARD LENGTH=625
Length=625

 Score =  571 bits (309),  Expect = 2e-162
 Identities = 414/462 (90%), Gaps = 18/462 (4%)
 Strand=Plus/Plus

Query  1    CACATTCACAAAACTATGGATCTTTGCAAAAGTAGAGCAACAACCACCGTTACTCTCTCA  60
            |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  34   CACATTCACAAAGCTATGGATCTTTGCAAAAGTAGAGCAACAACCACCATTACTCTCTCA  93

Query  61   TGTCTCCTCTTCTTTGTTTCTTCCTTCTACACAATCTCCACCGCGAAATCTGTCACTAAT  120
            |||||| |||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct  94   TGTCTCATCTTCTTTGTTTCTTCATTCTACACAATCTCCACCGCTAAATCTGTCACGAAT  153

Query  121  CCGCTCTATCAACTCCTTCTGTTCACCGCCTTCTTTCTCGCTGCAGCCTTGTCTCTTCTT  180
            ||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||| ||
Sbjct  154  CCGCTCTATCAACTCCTTCTGTTCATCGGCTTCTTCCTCGCTGCAGCCTTGTCGCTTGTT  213

Query  181  ATACTAGTGGCGGCGGCACGAGCCACCATGGTCGCGTGGATAACTATCCTCGTCTTACTG  240
             |||| ||||| || ||||||||||||||||| |||||||||||  ||||||||||||||
Sbjct  214  TTACTGGTGGCAGCAGCACGAGCCACCATGGTTGCGTGGATAACGGTCCTCGTCTTACTG  273

Query  241  GCCTTTTCGGGTACACGTCGCCGTGTTTTAGCGCGGAGAGGGAAGACAATCACCGCGGAT  300
            |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| 
Sbjct  274  GCCTTTTCGGGTACACGTCGCCGTGTTTTAGCGCGGAGGGGGAAGACGATCACGGCGGAC  333

Query  301  GTGGCGATGTGCTTGTTTAG-------A---GAGA--CAAATCCTCGCGGTTAGTCTCGT  348
            ||||||||| ||||||| ||       |   ||||  |||||||||| |||||||||| |
Sbjct  334  GTGGCGATGAGCTTGTTCAGGGTTCTGATTAGAGAAGCAAATCCTCGTGGTTAGTCTCAT  393

Query  349  GAGGCTTGTTTGTTGTTAGAGAGTATTTTCATATCACTTTTGTATATAACAAAAATAT--  406
            || | ||||||||||||||||||||||| |||||||||||||||||||||||||||||  
Sbjct  394  GAAGATTGTTTGTTGTTAGAGAGTATTTACATATCACTTTTGTATATAACAAAAATATAT  453

Query  407  GTCtttttgtgaatgatttt-cccctttt-tgt-tttaattt  445
            || ||||||||||||||||| |||||||| ||| |||| |||
Sbjct  454  GTATTTTTGTGAATGATTTTTCCCCTTTTGTGTATTTA-TTT  494



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23559814943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5