BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495075
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50180.1 | Symbols: | Protein kinase superfamily protein | ... 2440 0.0
> AT5G50180.1 | Symbols: | Protein kinase superfamily protein
| chr5:20430596-20433100 FORWARD LENGTH=1778
Length=1778
Score = 2440 bits (1321), Expect = 0.0
Identities = 1533/1627 (94%), Gaps = 47/1627 (3%)
Strand=Plus/Plus
Query 124 TCCACTGATCCACTTCTTGTTCTGCTTCTTCTCTCTTTGTTTTGTCAAGATTCTTCTCTT 183
||||||||| || |||||| ||||||||||||||||| ||||||| |||| |||||||||
Sbjct 153 TCCACTGATTCATTTCTTGCTCTGCTTCTTCTCTCTTAGTTTTGTTAAGAATCTTCTCTT 212
Query 184 ATCCA--------TTTC-----TAT---T---T-TATAATTTTAGTTGGGGGAGAGCTTG 223
||||| |||| ||| | | ||||||||||||||||||||||||||
Sbjct 213 ATCCATTGTGTTTTTTCTATTTTATAAATACATATATAATTTTAGTTGGGGGAGAGCTTG 272
Query 224 CCTGGTGTCGCCTTCTTCTCTCTTTAAGACTTGTGCTTAATTTACGGACATGTGAGGATA 283
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 273 CCTGGTGTCGCCTTCTTCTCTCTCTAAGACTTGTGCTTAATTTACGGACATGTGAAGATA 332
Query 284 CTTCGCTTTTGCCTCATCAAAGGGCATGTTAGCTATTTACTTA-----tctc-t-tc-tc 335
|||||||||||||||||| |||||||||||||||||||||||| |||| | || ||
Sbjct 333 CTTCGCTTTTGCCTCATCGAAGGGCATGTTAGCTATTTACTTATCTCTTCTCTTCTCTTC 392
Query 336 --t-tc---t---ctctcAAATCTTCAGAGATACAAATCAAGAAAGTGATAAAACGaaaa 386
| || | |||||||||||||| |||||||||||||||||||||| |||| ||||
Sbjct 393 TTTGTCTTGTGAGCTCTCAAATCTTCATAGATACAAATCAAGAAAGTGATCAAAC-AAAA 451
Query 387 aaaGGACAAGTCTTTTTTGTATCTCAAGATCGGGAAAAAATGTGGTTGCAAGGTTTGAAG 446
||||||||||||||||| |||| || |||||| |||||||||||||||||||||||||||
Sbjct 452 AAAGGACAAGTCTTTTTGGTATTTC-AGATCGAGAAAAAATGTGGTTGCAAGGTTTGAAG 510
Query 447 TAATCTTGCAATGGGTTCTTTGACTGGATTTAGAATGGAACCCAAATGGCAAATTGATCC 506
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 TAATCTTGCAATGGATTCTTTGACTGGATTTAGAATGGAACCCAAATGGCAAATTGATCC 570
Query 507 TCAGCTTCTCTTTGTTGGGCCAAAGATTGGTGAAGGAGCTCATGCCAAAGTCTATGAGGG 566
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 571 TCAGCTTCTCTTTGTTGGTCCAAAGATTGGTGAAGGAGCTCATGCTAAAGTCTATGAGGG 630
Query 567 AAAATACAAGAATCAGACAGTTGCTATAAAGATAGTTCACAGAGGAGAAACACCAGAAGA 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AAAATACAAGAATCAGACAGTTGCTATAAAGATAGTTCACAGAGGAGAAACACCAGAAGA 690
Query 627 GATTGCTAAAAGAGATTCAAGATTCCTAAGAGAAGTAGAAATGCTCTCACGTGTTCAACA 686
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 691 GATTGCTAAAAGAGATTCAAGATTCCTTAGAGAAGTAGAAATGCTCTCACGTGTTCAACA 750
Query 687 CAAGAATTTGGTCAAGTTCATTGGTGCTTGCAAGGAGCCTGTAATGGTGATAGTCACGGA 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 751 CAAGAATTTGGTCAAGTTCATTGGTGCTTGCAAGGAGCCTGTAATGGTGATAGTTACAGA 810
Query 747 ACTTCTTCAAGGCGGTACATTGCGTAAATATCTGTTAAACTTGAGACCCGCATGTTTGGA 806
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 811 ACTTCTTCAAGGCGGTACATTGCGTAAATATCTATTAAACTTGAGACCCGCATGTTTGGA 870
Query 807 GACTCGTGTGGCTATCGGTTTTGCGCTTGATATTGCTCGTGGCATGGAATGCTTGCATTC 866
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 871 GACTCGTGTGGCTATCGGTTTTGCGCTTGATATTGCTCGTGGTATGGAATGCTTGCATTC 930
Query 867 CCATGGGATCATTCACCGTGATCTCAAACCCGAGAACTTGCTTTTAACTGCAGACCACAA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 931 CCATGGGATCATTCACCGTGATCTCAAACCCGAGAACTTGCTTTTAACTGCAGACCATAA 990
Query 927 AACAGTAAAACTAGCAGACTTTGGATTAGCAAGAGAAGAGTCACTGACTGAGATGATGAC 986
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 991 AACAGTAAAACTAGCAGATTTTGGATTAGCAAGAGAAGAGTCACTGACTGAGATGATGAC 1050
Query 987 GGCTGAGACAGGAACATACCGATGGATGGCACCAGAGTTGTACAGCACGGTTACTCTTCG 1046
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1051 GGCTGAGACAGGAACATACCGATGGATGGCACCTGAGTTGTACAGCACGGTAACTCTTCG 1110
Query 1047 ATTGGGAGAGAAGAAGCATTACAACCATAAAGTCGACGCATATAGCTTTGCAATCGTTCT 1106
|||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||
Sbjct 1111 ATTGGGAGAGAAGAAGCACTACAATCATAAAGTCGACGCCTATAGCTTTGCAATAGTTCT 1170
Query 1107 TTGGGAGCTTTTACACAATAAATTGCCTTTTGAGGGAATGTCAAATCTCCAAGCAGCATA 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 TTGGGAGCTTTTACACAATAAATTGCCTTTTGAGGGAATGTCAAATCTCCAAGCAGCATA 1230
Query 1167 TGCAGCCGCCTTCAAAAATGTGAGACCAAGCGCGGAGAGCTTACCAGAGGAGTTGGG-AA 1225
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1231 TGCAGCAGCCTTCAAAAATGTGAGACCAAGCGCGGAGAGCTTACCGGAGGAGTTGGGCGA 1290
Query 1226 CCATTGTAACATCATGTTGGAATGAGGATCCTAATGCTCGGCCAAACTTCACACATATCA 1285
|||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1291 -CATTGTAACATCATGTTGGAATGAGGATCCGAATGCTCGGCCCAACTTCACGCATATCA 1349
Query 1286 TTGAGTTACTACTTAACTATCTCTCCAAGGTTGGATCTCCGATATCCGCAATTCCACAAC 1345
|||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 1350 TTGAGTTACTTCTTAACTATCTCTCTAAAGTTGGATCTCCGATATCCGCTATTCCACAAC 1409
Query 1346 GGATTCTTGCTTCGAAGAACACACTATTGCCACCGGATTCTCCTGGAACTAGCTCTTTGA 1405
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1410 GGATTCTTGCTTCGAAGAACACGCTATTGCCACCGGATTCTCCTGGAACTAGCTCTTTGA 1469
Query 1406 TGGCTAAGCTTGATGAATGTGGGGAAACTCCAAAGGCCAAAAGTGAAGACAAACGAAAGG 1465
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1470 TGGCTAAGCTTGATGAATGTGGGGAAACTCCAAAGGCCAAAAGTGAAGACAAACGAAAAG 1529
Query 1466 GTTTGTTTTTCTGCTTCAATCAATGTTATTAACCTTCG--AGCACAGAGTGG-TTTAGGA 1522
|||||||||||||||||||||||||||||||||||| | | |||||||||| |||||||
Sbjct 1530 GTTTGTTTTTCTGCTTCAATCAATGTTATTAACCTT-GAAATCACAGAGTGGTTTTAGGA 1588
Query 1523 CCA-ATGATTTGGTAGACATCACTCAAATTATTGATGTAATAATATCCTCCCTACCATAT 1581
||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1589 CCAGA-GATTTGGTAGACATCACTCAAATTATTCATGTAATAATATCCTCCCTACCATAT 1647
Query 1582 GAATTTAGCAAGAAGTTCATTTATATAAATAAATAGTTATGTAATTGTAATGAATTTAAA 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 GAATTTAGCAAGAAGTTCATTTATATAAATAAATAGTTATGTAATTGTAATGAATTTAAA 1707
Query 1642 AGTAGACGTAAAGAAAAAGTTTCCTAAAGAGGCTCATGTTCCCTAAATAAGAAAGTTTTT 1701
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1708 AGTAGACGTAAAGAAAAAGTTTCCTAAAGAGGCTCATGTTCCCTAAATGAGAAAGTTTTA 1767
Query 1702 GTTGTGT 1708
||| |||
Sbjct 1768 GTTTTGT 1774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84437316690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5