BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495076

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50190.1 | Symbols:  | Unknown gene | chr5:20433507-20434543...   147    2e-34


> AT5G50190.1 | Symbols:  | Unknown gene | chr5:20433507-20434543 
REVERSE LENGTH=683
Length=683

 Score =  147 bits (79),  Expect = 2e-34
 Identities = 95/103 (92%), Gaps = 0/103 (0%)
 Strand=Plus/Plus

Query  329  AGATTTCACAGAAATGGATTCCAAGCATCAAAGATGCATTTGTGACATTAACCATTTATC  388
            |||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||||
Sbjct  116  AGATATCACAGAAATGGATTCCAAGCATCAAAGATGTGTATGTGACATTAACCATTTATC  175

Query  389  TCGAACCAAAAGTTCAATATTTAACCGATAAGTCCATGGAGGT  431
            || |||||||| ||||||| ||||||||||||||||| |||||
Sbjct  176  TCCAACCAAAAATTCAATACTTAACCGATAAGTCCATCGAGGT  218


 Score =  126 bits (68),  Expect = 2e-28
 Identities = 74/77 (96%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  427  GAGGTAAGCCGAGTTATGACCATAGGGAAACCACACTTTGAGAAAGTACAAGTTGCCTTA  486
            |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct  290  GAGGTAAGCCGAGTTATGACAATATGGAAACCACACTTTGAGAAAATACAAGTTGCCTTA  349

Query  487  GAGGCATATACTGAAAA  503
            |||||||||||||||||
Sbjct  350  GAGGCATATACTGAAAA  366



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30994468699


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5