BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495077
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50200.3 | Symbols: WR3 | nitrate transmembrane transporters... 1480 0.0
> AT5G50200.3 | Symbols: WR3 | nitrate transmembrane transporters
| chr5:20436180-20437726 FORWARD LENGTH=952
Length=952
Score = 1480 bits (801), Expect = 0.0
Identities = 895/941 (95%), Gaps = 3/941 (0%)
Strand=Plus/Plus
Query 1 GATACAATTAGAATATGTAGAGTATCTTGTAGGTGACGTAACCATGAAATATAGAATTGT 60
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1 GATACAATTACAATATGTAGAGTATCTTATAGGTGACGTAACCATGAAATATAGAATTCT 60
Query 61 TTGGAATCTGAAACTGAATTATTCAGTTGATAAATGATAAAACAAATACTCATATCTCAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGGAATCTGAAACTGAATTATTCAGTTGATAAATGATAAAACAAATACTCATATCTCAT 120
Query 121 CCTTTGGCATGGCGATTCACAAGATCCTCTTCGCTTCACTTCTCATATGCTCTCTGATCC 180
|||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||
Sbjct 121 CCTTTGGCATGGCGATCCAGAAGATCCTCTTTGCTTCACTTCTCATATGCTCACTGATCC 180
Query 181 AATCCAGCCATGGGGCGGAAAAAGTAAGACTCTTCAAAGAGCTGGACAAAGGTGCTCTTG 240
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 AATCCATCCACGGGGCGGAAAAAGTAAGACTCTTCAAAGAGCTGGACAAAGGTGCACTTG 240
Query 241 ATGTCACCACTCAACCCAGTCGACAAGGAGAC-GGTGTTGTTTTGGATGCCGGCAAGGAT 299
||||||||||| ||||||| ||| ||||| | |||||||||||||||||||||||||||
Sbjct 241 ATGTCACCACTAAACCCAGCCGAGAAGGA-CCAGGTGTTGTTTTGGATGCCGGCAAGGAT 299
Query 300 ACATTGAACATTACATGGAAGCTAAGCGCTATTGGGTCTAAAAGAGAGGCTGAATTTAAG 359
|| |||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 300 ACGTTGAACATTACATGGACGCTAAGCTCGATTGGGTCTAAAAGAGAGGCTGAATTTAAG 359
Query 360 ATCATCAAAGTAAAGCTATGCTACGCTCCACCTAGCCAACTTGACCGACCATGGCGCAAG 419
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 ATCATCAAAGTTAAGCTATGCTACGCTCCACCTAGCCAAGTTGACCGACCATGGCGCAAA 419
Query 420 ACCCATGACGAGCTCTTCAAAGACAAGACCTGCCCACACAAGATCATAGCCAAGCCTTAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACCCATGACGAGCTCTTCAAAGACAAGACCTGCCCACACAAGATCATAGCCAAGCCTTAT 479
Query 480 GACAAAACCCCTCAATCAACTGTTTGGACCCTTGAGCGTGACATCCCCACAGGTACCTAC 539
|||||||| | |||||||||| |||||| |||||||||||||||||||| || ||||||
Sbjct 480 GACAAAACACTTCAATCAACTACTTGGACTCTTGAGCGTGACATCCCCACCGGAACCTAC 539
Query 540 TTCGTTCGTGCCTACGCAGTTGATGCCATTGGCCATGAAGTTGCCTATGGACAGAGCACC 599
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTCGTTCGTGCCTACGCGGTTGATGCCATTGGCCATGAAGTTGCCTATGGACAGAGCACC 599
Query 600 GACGATGCCAAGACAACCAATCTCTTCAGCGTTCAGGCTATCAGTGGCCGCCACACGTCC 659
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 GACGATGCCAAGAAAACCAATCTCTTCAGCGTTCAGGCTATCAGTGGCCGCCACGCGTCC 659
Query 660 TTAGATATTGCCTCCATCTGCTTCAGCGTCTTCTCCGTGGTGGCTCTTGTCGTCTTCTTT 719
||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 660 CTAGATATTGCCTCCATCTGTTTCAGTGTCTTCTCCGTCGTGGCTCTTGTCGTCTTCTTT 719
Query 720 ATAAACGAGAAGAGGAAGGCCAAGATAGAGCAAAGCAAATGAGTCGTTTACTTTGCGTAT 779
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTCAATGAGAAGAGGAAGGCCAAGATAGAGCAAAGCAAATGAGTCGTTTACTTTGCGTAT 779
Query 780 TTGTGACGTTGAACCCaaaaaaaGTTGACTTTGAACTT-CTTGGTTACCAATTCCTTTTG 838
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 780 TTGTGACGTTGAACCCAAAAAAAGTTGACTTTGAACTTTCTTGTTTACCAATTCCTTTTG 839
Query 839 TCTTGTTGCTTACTTCTTCTTTCCTATATGCTTTTATTTATGTGTTTGTACAATTAAGCC 898
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 TCTTGTTGCACACTTCTTCTTTCTTATATGCTTTTATTTATGTGTTTGTACAATTAAGCC 899
Query 899 ATTGATATGGAGCAAAACTAATCCTACGGTGGTGATGCGTT 939
||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 ATTGATATGGAACAAAACTAATCCTACGGTGGTGATGCGTT 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5