BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495081
Length=1726
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50230.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2676 0.0
> AT5G50230.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:20448370-20450881 REVERSE LENGTH=1818
Length=1818
Score = 2676 bits (1449), Expect = 0.0
Identities = 1652/1747 (95%), Gaps = 25/1747 (1%)
Strand=Plus/Plus
Query 1 CGACTCCTTTTGATCTG-ATCGAGAGAT-GTCACAGGAGGAGAAAGCTATGGAAGCCATA 58
|||||| |||||||||| |||||||||| || |||||||||||||||||||||||| |||
Sbjct 1 CGACTCTTTTTGATCTGAATCGAGAGATGGT-ACAGGAGGAGAAAGCTATGGAAGCAATA 59
Query 59 AAGGACGCTTTGAGAGCTTTGCGGAAGCGTCATCTTTTAGAGGAAGGAGCTCATGCTCCT 118
|| ||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 60 AATGACGCTTTGAGAGCTTTGCGGAAGCGTCATCTTCTGGAAGAAGGAGCTCATGCTCCT 119
Query 119 GCGATTTCTGCTCTCTC-GAGACCTATAATCTCTCAGGGGTCAGAATGGAAGGAGAAAAC 177
||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||
Sbjct 120 GCGATTTCTGCTCTCTCTAAG-CCTTTAATCTCTCAGGGTTCAGAATGGAAGGAGAAAAC 178
Query 178 AGAAAAACTGGAAACAGAGTTACAACAATGTTACAAAGCTCAATCCCGACTGTCTGAGCA 237
|||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||
Sbjct 179 AGAAAAGCTGGAAACAGAGTTACAGCAATGTTACAAAGCTCAATCTCGACTATCTGAACA 238
Query 238 ACTTGTGATAGAAGTAGCTGAATCCAGAACTTCAAAGGCTATTTTACAAGAAAAGGAGTT 297
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 239 ACTGGTGATAGAAGTAGCTGAATCCAGAACTTCAAAGGCTATTTTACAAGAGAAGGAGTT 298
Query 298 GTTAATTAATGACTTGCAGAAGGAATTAACCCAAAGAAGGGAGGAGTGTACACAAATACA 357
|||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||
Sbjct 299 GTTAATTAATGACTTGCAGAAGGAATTAACACAAAGAAGGGAGGATTGTACACGATTACA 358
Query 358 AGAAGAGTTAGAGGAAAAGACCAAGACGGTGGATGTTCTTATTGCTGAAAACCAGGAAAT 417
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 359 AGAAGAGTTAGAGGAAAAGACCAAGACGGTGGATGTACTTATTGCTGAAAACCTGGAAAT 418
Query 418 CCGGTCTCAGCTGGAAGAGATGACAAGTAGAGTGCAAAAAGCAGAGTCTGAGAATAAAAT 477
||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 419 ACGGTCTCAGTTGGAGGAGATGACAAGTAGAGTGCAAAAAGCAGAGACTGAGAATAAAAT 478
Query 478 GTTAATTGATCGGTGGATGTTACAGAAGATGCAGGATGCAGAACGTCTTAACGAGGCAAA 537
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 479 GTTAATTGATCGGTGGATGTTGCAGAAGATGCAGGATGCAGAACGTCTTAATGAGGCAAA 538
Query 538 TGATCTCTATGAAGAAATGCTAGCTAAGCTGAAGGCAAATGGTTTGGAAACTCTTGCTCG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGATCTCTATGAAGAAATGCTAGCTAAGCTGAAGGCAAATGGTTTGGAAACTCTTGCTCG 598
Query 598 GCAGCAAGTTGATGGCATTGTCCGCCGAAATGAAGATGGAACCGATCACTTTGTTGAATC 657
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 599 GCAGCAAGTTGATGGTATTGTCCGCCGCAATGAAGATGGAACCGATCACTTTGTTGAGTC 658
Query 658 AACCATTCCGTCAACATGTGGGCACCGTATCCATGCTCATGAAGGTGGCTGTGGTTCAAT 717
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 659 AACCATTCCGTCAACATGTGCGAATCGTATCCATGCTCATGAAGGTGGCTGTGGTTCAAT 718
Query 718 AATCTTTGAATACAACTCTGGTACTCTGTTTACTGGTGGGCAAGACCGAGCAGTAAAAAT 777
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 719 AGTCTTTGAATACAACTCTGGTACTCTGTTTACTGGTGGGCAAGATCGAGCAGTAAAAAT 778
Query 778 GTGGGACACCAATAGCGGGGCTTTAATCAAAAGCTTATACGGTTCCCTTGGGAATATACT 837
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTGGGACACCAATAGCGGAACTTTAATCAAAAGCTTATACGGTTCCCTTGGGAATATACT 838
Query 838 TGATATGGCCGTAACCCACGACAATAAATCTGTGATCGCAGCAACCAGCTCAAACAATTT 897
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 839 TGATATGGCCGTAACCCACGACAATAAATCCGTGATCGCAGCAACCAGCTCAAATAATTT 898
Query 898 GTTTGTGTGGGATGTAAGCTCGGGTAGGGTACGCCATACACTCACAGGCCACACCGATAA 957
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 899 GTTTGTATGGGATGTTAGCTCGGGTAGGGTACGCCATACACTCACAGGCCACACGGATAA 958
Query 958 GGTTTGTGCTGTGGATGTGAGCAAATTCTCTAGCCGACATGTTGTCAGTGCAGCATATGA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGTTTGTGCTGTGGATGTGAGCAAATTCTCTAGCCGACATGTTGTCAGTGCAGCATATGA 1018
Query 1018 CCGTACCATAAAACTTTGGGATTTACATAAAGGTTACTGCACTAACACAGTACTCTTTAC 1077
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1019 CCGTACCATAAAACTTTGGGATTTGCATAAAGGTTACTGCACTAACACAGTACTCTTTAC 1078
Query 1078 CAGTAACTGCAACGCAATCTGCCTCAGCATAGATGGGCTTACGGTATTCTCAGGCCACAT 1137
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAGCAACTGCAATGCAATCTGCCTCAGCATAGATGGGCTTACGGTATTCTCAGGCCACAT 1138
Query 1138 GGATGGAAATCTTAGGTTATGGGATATTCAAAGTGGGAAACTTCTGTCCGAAGTAGCTGG 1197
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1139 GGATGGGAATCTTAGGTTATGGGATATTCAAACTGGGAAACTTCTGTCCGAAGTAGCTGG 1198
Query 1198 ACATTCTTCTGCCGTGACCTCAGTATCATTGTCCCGGAACGGAAATAGGATCTTGACGAG 1257
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ACATTCTTCTGCTGTGACCTCAGTATCATTGTCCCGGAACGGAAATAGGATCTTGACGAG 1258
Query 1258 CGGAAGAGACAACGTGCATAATGTATTTGATACGCGGACTTTGGAAATATGTGGGACATT 1317
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1259 CGGGAGAGACAACGTGCATAATGTATTTGATACCCGGACTTTGGAAATATGTGGGACACT 1318
Query 1318 GAGAGCATCAGGGAACAGATTGGCATCGAATTGGAGCCGGTCATGTATAAGTCCAGATGA 1377
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1319 GAGAGCATCGGGGAACAGATTAGCATCGAATTGGAGCCGGTCATGCATAAGTCCAGATGA 1378
Query 1378 TGATTACGTGGCTGCGGGATCTGCAGATGGTACAGTTCATGTATGGTCACTATCTAAAGG 1437
|||||| |||||||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 1379 TGATTATGTGGCTGCGGGATCTGCAGATGGTTCGGTTCATGTATGGTCGCTATCTAAAGG 1438
Query 1438 AAATATAGTGAGCATTCTCAAGGAGCAAACATCTCCTATACTGTGTTGTTCTTGGAGCGG 1497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1439 CAATATAGTGAGCATTCTCAAGGAGCAAACATCTCCTATACTGTGTTGTTCTTGGAGTGG 1498
Query 1498 GATCGGGAAACCATTGGCGTCGGCTGATAAAAACGGGTACATTTGCACGTGGACATGATT 1557
|||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1499 GATCGGGAAACCATTGGCATCGGCTGATAAAAACGGGTACGTTTGTACGTGGACATGATT 1558
Query 1558 ATAAAACAG-TTTAAACACTGGTTTGATAACTC---G------ATG---CC--AAATGGA 1602
|| |||||| ||||| ||||||||||||||||| | ||| || ||| |||
Sbjct 1559 ATGAAACAGGTTTAA-CACTGGTTTGATAACTCAATGCGTCGTATGTTTCCTCAAAAGGA 1617
Query 1603 TGGGCGTGTATACTCTT-GTCTTTTGGTGTTCTTTCCCTCAAAGAACTTGCATTTGATGA 1661
||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1618 TGGGCGTGTGTACTCTTTGTCTTTTGGTGTTCTTTCTCTCAAAGAACTTGCATTTGATGA 1677
Query 1662 AA--TGTTTCGTACCGTATATAATTGTTTTCTAAGGTTCATTTGAGTGTATTGCTCAAtt 1719
| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1678 CACGTGTTTCTTACCGTATATAATTGTTTTCTAAGGT-CATTTGAGTGTATTGCTCAATT 1736
Query 1720 ttttttt 1726
|||||||
Sbjct 1737 TTTTTTT 1743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85340926500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5