BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495082 Length=996 Score E Sequences producing significant alignments: (Bits) Value AT5G50240.1 | Symbols: PIMT2, AtPIMT2 | protein-l-isoaspartate ... 1378 0.0 AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein ... 113 3e-24 > AT5G50240.1 | Symbols: PIMT2, AtPIMT2 | protein-l-isoaspartate methyltransferase 2 | chr5:20451228-20452569 FORWARD LENGTH=1061 Length=1061 Score = 1378 bits (746), Expect = 0.0 Identities = 897/967 (93%), Gaps = 21/967 (2%) Strand=Plus/Plus Query 49 GAATaaaa-aaaaTGAGAGCTCAGGTTTTATTATGCCCAACAATAACAGCCTATGGTCGC 107 ||| |||| |||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 97 GAA-AAAAGAAAATGAGAGCTCAGGTTTTATTATGTCCAACAATAACAGCTTATGGTCGT 155 Query 108 CTCTATTGTGCGCCACGTAGACTTCACCGCTACAA-T--TCATCATCATCATCTCAGTTT 164 ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 156 CTCTATTGTGCGCCACGTAGACTTCACCGCTACAATTCATCATCATCATCATCTCAGTTT 215 Query 165 CTGGATCTCAGTCTCTCTCGCTTCTCCGGTCG-TCTCTTCTTCCACAT-G-G-------A 214 ||| |||||| ||||||||||||||||||| | ||||||||||||||| | | | Sbjct 216 CTGAATCTCAATCTCTCTCGCTTCTCCGGT-GCTCTCTTCTTCCACATGGAGCAATTCCA 274 Query 215 GAGTGGAACTAGCTCGAGTGGCAAGAAATCAATGGTGGAAAATCTGAAGCGGTACGGTGT 274 |||||||||| ||||||| ||||||| | |||||||||||| |||||||||||||||| Sbjct 275 GAGTGGAACTGGCTCGAGCGGCAAGAGAGGGATGGTGGAAAATTTGAAGCGGTACGGTGT 334 Query 275 GATATCATCGAAGAGAGTAGCTCAAGTTATGGAAGCTTTAGATAGAGGTCTCTTTGTACC 334 |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 335 GATATCGTCGAAAAGAGTAGCTCAAGTTATGGAGGCTTTAGATAGAGGTCTCTTTGTACC 394 Query 335 AGTTGGATCTTCAGCTTATGTTGATACTCCTGTACCTATAGGTTATAATGCTACCATTTC 394 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 395 AGTTGGTTCTTCAGCTTATGTTGATACTCCTGTACCTATAGGTTATAATGCTACCATTTC 454 Query 395 TGCTCCGCATATGCATGCTACTTGCTTGCAGCTTTTGGAAGATAAGCTCAAGCCCGGGAT 454 ||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| Sbjct 455 TGCTCCGCATATGCATGCTACTTGCTTGCAGCTCTTGGAAGATAAGCTCCACCCCGGGAT 514 Query 455 GCGTGCTTTGGATGTTGGTTCAGGAACCGGGTACTTGACTGGCTGTTTTGCTTTGATGGT 514 ||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 515 GCGCGCTTTAGATGTCGGCTCAGGAACCGGGTACTTGACTGGCTGTTTTGCTTTGATGGT 574 Query 515 TGGAGCTGAGGGACGCGTTGTTGGTGTGGATCATATCCCTGAATTGGTTGATATGTCTAT 574 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 575 TGGAGCTGAGGGACGTGTTGTTGGCGTGGATCATATCCCTGAATTGGTTGATATGTCTAT 634 Query 575 CAAGAATATCGAAAAGAGTGTCGCTGCTTCCTTGCTTAAGAAAGGATCTCTCTCCCTACA 634 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| Sbjct 635 CAAGAATATCGAAAAGAGTGTTGCTGCTTCCTTTCTTAAGAAAGGATCTCTCTCCTTACA 694 Query 635 TGTTGGTGATGGAAGAAAAGGTTGGCAAGAGTTTGCACCATATGATGCGATACACGTAGG 694 |||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 695 TGTTGGGGATGGAAGAAAAGGTTGGCAAGAGTTTGCACCGTATGATGCAATACACGTAGG 754 Query 695 AGCAGCGGCATCAGAAATCCCGCAGCCTCTTTTGGATCAGCTAAAACCCGGTGGGCGAAT 754 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct 755 AGCAGCGGCATCAGAAATCCCTCAGCCCCTTTTGGATCAGCTAAAACCCGGTGGACGAAT 814 Query 755 GGTGATTCCACTAGGAACCTATTTTCAAGAGCTCAAGGTAATCGACAAAAACAAAGATGG 814 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 815 GGTGATTCCACTAGGAACCTATTTTCAAGAGCTCAAGGTAATCGACAAAAACGAGGATGG 874 Query 815 TTCCATCAAGGTGCATACCGAAACTTCGGTCAGGTATGTGCCCCTCACTAGCCGCGACGA 874 ||| |||||||| |||||||||||||| ||| |||||||||||||||||||||| | ||| Sbjct 875 TTCAATCAAGGTACATACCGAAACTTCAGTCCGGTATGTGCCCCTCACTAGCCGTGTCGA 934 Query 875 ACAGTTAGGAGGATTTTGACATCAACGA-A--GAGAAAACTCTACATACCACGCCTTAGT 931 ||||||||||||||||||||| |||| | | ||||||||||||||| ||||| |||||| Sbjct 935 ACAGTTAGGAGGATTTTGACAACAACAACAAAGAGAAAACTCTACATCCCACGTCTTAGT 994 Query 932 GTACATATAGA-GGTTGTG-AATGTTCTGTAATATGTTTTGATGGGTAATAAAGAAAATC 989 ||||||||| | ||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 995 GTACATATAAAAGGTTGTGTAATGTTTTGTAATATGTTTTGATGGGTAATAAAGAAAATA 1054 Query 990 TGTTTAC 996 ||||||| Sbjct 1055 TGTTTAC 1061 Score = 52.8 bits (28), Expect = 6e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 25 AACAGATCATCAGAGAAGAAACTAGAAT 52 |||||||||||||||||||||||||||| Sbjct 49 AACAGATCATCAGAGAAGAAACTAGAAT 76 > AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B | chr5:20452487-20454013 REVERSE LENGTH=1108 Length=1108 Score = 113 bits (61), Expect = 3e-24 Identities = 76/83 (92%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 916 CATACCACGCCTTAGTGTACATAT-AGAGGTTGTG-AATGTTCTGTAATATGTTTTGATG 973 ||| ||||| |||||||||||||| | |||||||| |||||| ||||||||||||||||| Sbjct 1108 CATCCCACGTCTTAGTGTACATATAAAAGGTTGTGTAATGTTTTGTAATATGTTTTGATG 1049 Query 974 GGTAATAAAGAAAATCTGTTTAC 996 ||||||||||||||| ||||||| Sbjct 1048 GGTAATAAAGAAAATATGTTTAC 1026 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48777356737 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5