BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495086
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50260.1 | Symbols: | Cysteine proteinases superfamily prot... 2183 0.0
> AT5G50260.1 | Symbols: | Cysteine proteinases superfamily protein
| chr5:20455317-20457029 FORWARD LENGTH=1541
Length=1541
Score = 2183 bits (1182), Expect = 0.0
Identities = 1418/1529 (93%), Gaps = 27/1529 (2%)
Strand=Plus/Plus
Query 1 AGAGCTTACTTGTACCATTAAATCAACATAAAGTTCAATTATAGTTTG--ATCTTTATGT 58
||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4 AGAGCTTGCTTGCGCCATTAAATCAACATAAAGTTCAATTATAGTTTGAAATCTTTATGA 63
Query 59 ATCTCCATTTATTAATGTATCCATGTCATTAACCTTGAAATCTTTGTTGAATCCCACAAG 118
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 64 ATCTCCATTAATTAATGTATCCATGTCACTAACCTTGAAATCTTTGTTGAATCCCACAAG 123
Query 119 TAATCCTTTAGCCCCTTTTTGGTATTTTTCATTACATATCGTCATCACAATAGTATCTCA 178
|||||||||| |||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 124 TAATCCTTTAACCCC-TTTTGGTACTTTTCATTACATATCGTCATCACAATAACCTCTCA 182
Query 179 CCAA--AATATATAATCCCTATATAAACACTTTCTCTTTAGTCC---TTACCATCCACAA 233
|||| || |||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 183 CCAATGTATCTATAATCCCTATATAAACACTTTCTCTTTAGTCCTGATTACCATCAACAA 242
Query 234 ACTCAATCTCAATCACAAGAAAAATACAAAAATCACCATAGAAAAATATGAAGCGATTTA 293
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 243 ACTCAATCACAATCACAAG-TAAATACAAAAATCACCATAGAAAAATATGAAGCGATTTA 301
Query 294 TTGTTCTTGCGCTTTGCATGCTTATGGTTCTTGAAACCACAAAGAGTTTAGATTTCCATG 353
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 302 TTGTTCTTGCGCTTTGCATGCTTATGGTTCTTGAAACCACAAAGGGTTTAGATTTCCAT- 360
Query 354 AA-AAAGATGTGGAATCAGAGGATAGCTTGTGGGAGCTATACGAACGGTGGAAGAGCCAC 412
|| |||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 361 AACAAAGATGTGGAATCAGAGAATAGCTTGTGGGAGCTATACGAACGGTGGAGGAGTCAC 420
Query 413 CACACAATTGCTAGGAGCCTTGAAGAGAAAGCTAAGAGGTTCAACGTGTTTAAGCACAAT 472
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 CACACTGTTGCTAGGAGCCTTGAAGAGAAAGCTAAGAGGTTCAACGTGTTCAAGCACAAC 480
Query 473 GTGAAGCACATCCATGAGACCAACAAGAAGGA-AAATTCTTACAAGCTCAAGCTCAACAA 531
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 481 GTGAAGCACATCCATGAGACCAACAAGAAGGATAAA-TCTTACAAGCTCAAGCTAAACAA 539
Query 532 GTTTGGTGACATGACTAGTGAAGAATTTAGGAGAACATACGCTGGTTCAAACATCAAACA 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTTTGGTGACATGACTAGTGAAGAATTTAGGAGAACATACGCTGGTTCAAACATCAAACA 599
Query 592 TCATAGGATGTTTCAAGGAGAAAGACAGACCACAAAGAGCTTCATGTATGCAAATGTTGA 651
|||||||||||||||||| |||| | || |||||||||||||||||||||||||||| |
Sbjct 600 TCATAGGATGTTTCAAGGCGAAAAAAAGGCCACAAAGAGCTTCATGTATGCAAATGTAAA 659
Query 652 TACTCTCCCAACCTCCGTTGATTGGAGAAAGAATGGAGCCGTAACTCCTGTCAAAAACCA 711
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 TACTCTCCCAACCTCCGTTGATTGGAGAAAGAATGGAGCCGTCACTCCTGTCAAAAACCA 719
Query 712 AGGCCAATGCGGGAGTTGTTGGGCGTTTTCAACAGTTGTGGCTGTGGAAGGAATCAATCA 771
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||
Sbjct 720 AGGCCAATGCGGGAGTTGTTGGGCGTTTTCAACAGTTGTTGCGGTGGAAGGGATCAACCA 779
Query 772 AATAAGAACGAAAAAGCTGACATCACTATCAGAACAAGAGCTAGTGGACTGTGACACAAA 831
||||||||| ||||||||||||||||| ||||| ||||||||||| || ||||| |||||
Sbjct 780 AATAAGAACTAAAAAGCTGACATCACTCTCAGAGCAAGAGCTAGTAGATTGTGATACAAA 839
Query 832 CAAGAACCAAGGATGCAATGGAGGTTTAATGGACCTTGCTTTTGAGTTCATCAAGGAGAA 891
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 840 CCAGAACCAAGGATGCAATGGAGGTCTAATGGACCTTGCTTTTGAGTTCATCAAGGAGAA 899
Query 892 AGGAGGACTCACAAGCGAGCTAGTGTACCCTTACAAAGCTTCTGATGAAACTTGTGACAC 951
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 AGGAGGACTCACAAGTGAGCTAGTGTACCCTTACAAGGCTTCTGATGAAACTTGTGACAC 959
Query 952 AAACAAAGAAAATGCTCCGGTAGTTTCAATCGATGGACATGAAGATGTTCCTAAGAATAG 1011
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 960 AAACAAAGAAAATGCTCCGGTAGTTTCAATCGATGGACACGAAGATGTTCCTAAGAACAG 1019
Query 1012 TGAAGTTGATCTAATGAAAGCTGTTGCTCATCAACCTGTCTCTGTTGCAATTGATGCTGG 1071
|| | |||||||||||||||||||||| |||| ||||| |||||||| |||||||||||
Sbjct 1020 CGAGGATGATCTAATGAAAGCTGTTGCTAATCAGCCTGTTTCTGTTGCTATTGATGCTGG 1079
Query 1072 AGGCTCAGACTTTCAATTCTACTCCGAGGGAGT-TTTCACGGGGCGATGCGGAACAGAGC 1130
||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||
Sbjct 1080 AGGCTCAGACTTTCAATTCTACTCCGAGGGAGTGTTT-ACCGGGAGATGCGGAACAGAGC 1138
Query 1131 TGAACCATGGAGTTGCGGTAGTTGGCTATGGAACGACGATAGATGGAACAAAGTATTGGA 1190
| |||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||
Sbjct 1139 TAAACCATGGAGTTGCGGTAGTAGGGTATGGAACAACGATAGACGGAACAAAGTATTGGA 1198
Query 1191 TTGTTAAGAACTCATGGGGAGAGGAATGGGGAGAGAAAGGATACATAAGAATGCAAAGAG 1250
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1199 TTGTTAAGAATTCATGGGGAGAGGAATGGGGAGAGAAAGGATACATAAGAATGCAGAGAG 1258
Query 1251 GGATTCGTCATAAAGAAGGACTTTGTGGTATTGCAATGGAAGCTTCTTATCCTCTCAAGA 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGATTCGTCATAAAGAAGGACTTTGTGGTATTGCAATGGAAGCTTCTTATCCTCTCAAGA 1318
Query 1311 ACTCCAACACTAATCCTTCTAGACTTTCCTCGGACTCACTTAAGGATGAACTCTAAAAGC 1370
||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1319 ACTCCAACACTAACCCTTCTAGACTTTCCTTGGACTCGCTTAAGGATGAACTCTAAA--- 1375
Query 1371 TCTTTATATTTACTT-ATTTTA-GATTAAAAAGACATTAACAAATTTGTTTAGGATTCTT 1428
| | | || | ||| || ||| ||||||| ||||||| |||| |||||||| ||| ||
Sbjct 1376 T-TA-A-ATCT-CTTTATATTAAGATTAAATAGACATTGACAAGTTTGTTTATGATGATT 1431
Query 1429 GTTTGATTTTTCAATATATATCTTCATCGTTAATAGGTTGTAATGGTTTTCAATGTATGA 1488
|||| ||||| ||||||| |||| || |||||||||| | |||||||||||||||||
Sbjct 1432 GTTTTTTTTTTAAATATATTTCTTTTTCATTAATAGGTT--A-TGGTTTTCAATGTATGA 1488
Query 1489 AGTTGATGGGAATCGTTTGAATTCATTAA 1517
|||||||||||||||||||||||| ||||
Sbjct 1489 AGTTGATGGGAATCGTTTGAATTCGTTAA 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74849012595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5