BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495086 Length=1517 Score E Sequences producing significant alignments: (Bits) Value AT5G50260.1 | Symbols: | Cysteine proteinases superfamily prot... 2183 0.0 > AT5G50260.1 | Symbols: | Cysteine proteinases superfamily protein | chr5:20455317-20457029 FORWARD LENGTH=1541 Length=1541 Score = 2183 bits (1182), Expect = 0.0 Identities = 1418/1529 (93%), Gaps = 27/1529 (2%) Strand=Plus/Plus Query 1 AGAGCTTACTTGTACCATTAAATCAACATAAAGTTCAATTATAGTTTG--ATCTTTATGT 58 ||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4 AGAGCTTGCTTGCGCCATTAAATCAACATAAAGTTCAATTATAGTTTGAAATCTTTATGA 63 Query 59 ATCTCCATTTATTAATGTATCCATGTCATTAACCTTGAAATCTTTGTTGAATCCCACAAG 118 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 64 ATCTCCATTAATTAATGTATCCATGTCACTAACCTTGAAATCTTTGTTGAATCCCACAAG 123 Query 119 TAATCCTTTAGCCCCTTTTTGGTATTTTTCATTACATATCGTCATCACAATAGTATCTCA 178 |||||||||| |||| |||||||| ||||||||||||||||||||||||||| ||||| Sbjct 124 TAATCCTTTAACCCC-TTTTGGTACTTTTCATTACATATCGTCATCACAATAACCTCTCA 182 Query 179 CCAA--AATATATAATCCCTATATAAACACTTTCTCTTTAGTCC---TTACCATCCACAA 233 |||| || |||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 183 CCAATGTATCTATAATCCCTATATAAACACTTTCTCTTTAGTCCTGATTACCATCAACAA 242 Query 234 ACTCAATCTCAATCACAAGAAAAATACAAAAATCACCATAGAAAAATATGAAGCGATTTA 293 |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 243 ACTCAATCACAATCACAAG-TAAATACAAAAATCACCATAGAAAAATATGAAGCGATTTA 301 Query 294 TTGTTCTTGCGCTTTGCATGCTTATGGTTCTTGAAACCACAAAGAGTTTAGATTTCCATG 353 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 302 TTGTTCTTGCGCTTTGCATGCTTATGGTTCTTGAAACCACAAAGGGTTTAGATTTCCAT- 360 Query 354 AA-AAAGATGTGGAATCAGAGGATAGCTTGTGGGAGCTATACGAACGGTGGAAGAGCCAC 412 || |||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||| Sbjct 361 AACAAAGATGTGGAATCAGAGAATAGCTTGTGGGAGCTATACGAACGGTGGAGGAGTCAC 420 Query 413 CACACAATTGCTAGGAGCCTTGAAGAGAAAGCTAAGAGGTTCAACGTGTTTAAGCACAAT 472 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 421 CACACTGTTGCTAGGAGCCTTGAAGAGAAAGCTAAGAGGTTCAACGTGTTCAAGCACAAC 480 Query 473 GTGAAGCACATCCATGAGACCAACAAGAAGGA-AAATTCTTACAAGCTCAAGCTCAACAA 531 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| Sbjct 481 GTGAAGCACATCCATGAGACCAACAAGAAGGATAAA-TCTTACAAGCTCAAGCTAAACAA 539 Query 532 GTTTGGTGACATGACTAGTGAAGAATTTAGGAGAACATACGCTGGTTCAAACATCAAACA 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GTTTGGTGACATGACTAGTGAAGAATTTAGGAGAACATACGCTGGTTCAAACATCAAACA 599 Query 592 TCATAGGATGTTTCAAGGAGAAAGACAGACCACAAAGAGCTTCATGTATGCAAATGTTGA 651 |||||||||||||||||| |||| | || |||||||||||||||||||||||||||| | Sbjct 600 TCATAGGATGTTTCAAGGCGAAAAAAAGGCCACAAAGAGCTTCATGTATGCAAATGTAAA 659 Query 652 TACTCTCCCAACCTCCGTTGATTGGAGAAAGAATGGAGCCGTAACTCCTGTCAAAAACCA 711 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 660 TACTCTCCCAACCTCCGTTGATTGGAGAAAGAATGGAGCCGTCACTCCTGTCAAAAACCA 719 Query 712 AGGCCAATGCGGGAGTTGTTGGGCGTTTTCAACAGTTGTGGCTGTGGAAGGAATCAATCA 771 ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| || Sbjct 720 AGGCCAATGCGGGAGTTGTTGGGCGTTTTCAACAGTTGTTGCGGTGGAAGGGATCAACCA 779 Query 772 AATAAGAACGAAAAAGCTGACATCACTATCAGAACAAGAGCTAGTGGACTGTGACACAAA 831 ||||||||| ||||||||||||||||| ||||| ||||||||||| || ||||| ||||| Sbjct 780 AATAAGAACTAAAAAGCTGACATCACTCTCAGAGCAAGAGCTAGTAGATTGTGATACAAA 839 Query 832 CAAGAACCAAGGATGCAATGGAGGTTTAATGGACCTTGCTTTTGAGTTCATCAAGGAGAA 891 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 840 CCAGAACCAAGGATGCAATGGAGGTCTAATGGACCTTGCTTTTGAGTTCATCAAGGAGAA 899 Query 892 AGGAGGACTCACAAGCGAGCTAGTGTACCCTTACAAAGCTTCTGATGAAACTTGTGACAC 951 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 900 AGGAGGACTCACAAGTGAGCTAGTGTACCCTTACAAGGCTTCTGATGAAACTTGTGACAC 959 Query 952 AAACAAAGAAAATGCTCCGGTAGTTTCAATCGATGGACATGAAGATGTTCCTAAGAATAG 1011 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 960 AAACAAAGAAAATGCTCCGGTAGTTTCAATCGATGGACACGAAGATGTTCCTAAGAACAG 1019 Query 1012 TGAAGTTGATCTAATGAAAGCTGTTGCTCATCAACCTGTCTCTGTTGCAATTGATGCTGG 1071 || | |||||||||||||||||||||| |||| ||||| |||||||| ||||||||||| Sbjct 1020 CGAGGATGATCTAATGAAAGCTGTTGCTAATCAGCCTGTTTCTGTTGCTATTGATGCTGG 1079 Query 1072 AGGCTCAGACTTTCAATTCTACTCCGAGGGAGT-TTTCACGGGGCGATGCGGAACAGAGC 1130 ||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||||| Sbjct 1080 AGGCTCAGACTTTCAATTCTACTCCGAGGGAGTGTTT-ACCGGGAGATGCGGAACAGAGC 1138 Query 1131 TGAACCATGGAGTTGCGGTAGTTGGCTATGGAACGACGATAGATGGAACAAAGTATTGGA 1190 | |||||||||||||||||||| || |||||||| |||||||| |||||||||||||||| Sbjct 1139 TAAACCATGGAGTTGCGGTAGTAGGGTATGGAACAACGATAGACGGAACAAAGTATTGGA 1198 Query 1191 TTGTTAAGAACTCATGGGGAGAGGAATGGGGAGAGAAAGGATACATAAGAATGCAAAGAG 1250 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1199 TTGTTAAGAATTCATGGGGAGAGGAATGGGGAGAGAAAGGATACATAAGAATGCAGAGAG 1258 Query 1251 GGATTCGTCATAAAGAAGGACTTTGTGGTATTGCAATGGAAGCTTCTTATCCTCTCAAGA 1310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 GGATTCGTCATAAAGAAGGACTTTGTGGTATTGCAATGGAAGCTTCTTATCCTCTCAAGA 1318 Query 1311 ACTCCAACACTAATCCTTCTAGACTTTCCTCGGACTCACTTAAGGATGAACTCTAAAAGC 1370 ||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||| Sbjct 1319 ACTCCAACACTAACCCTTCTAGACTTTCCTTGGACTCGCTTAAGGATGAACTCTAAA--- 1375 Query 1371 TCTTTATATTTACTT-ATTTTA-GATTAAAAAGACATTAACAAATTTGTTTAGGATTCTT 1428 | | | || | ||| || ||| ||||||| ||||||| |||| |||||||| ||| || Sbjct 1376 T-TA-A-ATCT-CTTTATATTAAGATTAAATAGACATTGACAAGTTTGTTTATGATGATT 1431 Query 1429 GTTTGATTTTTCAATATATATCTTCATCGTTAATAGGTTGTAATGGTTTTCAATGTATGA 1488 |||| ||||| ||||||| |||| || |||||||||| | ||||||||||||||||| Sbjct 1432 GTTTTTTTTTTAAATATATTTCTTTTTCATTAATAGGTT--A-TGGTTTTCAATGTATGA 1488 Query 1489 AGTTGATGGGAATCGTTTGAATTCATTAA 1517 |||||||||||||||||||||||| |||| Sbjct 1489 AGTTGATGGGAATCGTTTGAATTCGTTAA 1517 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74849012595 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5