BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495088
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50290.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1528 0.0
> AT5G50290.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G17350.1); Has
300 Blast hits to 300 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 300; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:20461777-20464177
FORWARD LENGTH=1230
Length=1230
Score = 1528 bits (827), Expect = 0.0
Identities = 932/983 (95%), Gaps = 5/983 (1%)
Strand=Plus/Plus
Query 1 ACACATCAGTCTCTTGTAAACCACCCAAACAAAGAAAATGAAAATCTTGATATTGATTAT 60
|||||||| |||||||||||| ||||||| ||||||||||||||||||||| |||||| |
Sbjct 1 ACACATCACTCTCTTGTAAACAACCCAAATAAAGAAAATGAAAATCTTGATCTTGATTCT 60
Query 61 ATCCTCTCTGGCACTCCTTGAGCTTTGCGTTGTGGACGCATGCCGATCATACTGTGGAAA 120
||||| | || ||||| ||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 61 ATCCTTTGTGACACTCTTTGAGATTTGCGTTGTGGACGCATGTCGATCATACTGTGGAAA 120
Query 121 CATAACCGTTGATTACCCGTTTGGAATCCGAAATGGATGTGGGCATCCAGGGTATAGAGA 180
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 121 CATAACCGTTGATTATCCGTTTGGGATCCGAAACGGATGTGGGCATCCAGGGTATAGAGA 180
Query 181 TCTACTGTTTTGTATGAACGATGTGTTGATGTTTCACATAAGTTCTGGTTCTTATAGAGT 240
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 TCTATTGTTTTGTATGAACGATGTGTTGATGTTTCACATAAGTTCAGGTTCTTATAGAGT 240
Query 241 TTTAGACATCGATTACGCATATCAATCCATAACGCTGCATGATCCTCACATGTCGACCTG 300
||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 241 TTTGGACATCGATTACGCATATCAGTCCATAACACTGCATGATCCTCACATGTCGAACTG 300
Query 301 CGAAACCATCGTGCTTGGCGGCAAAGGCAATGGCTTTGAAGCTGAGGATTGGAGAGCCCC 360
||||||||||||||| || |||||||||||||||||||||||||||||||||||| | ||
Sbjct 301 CGAAACCATCGTGCTCGGTGGCAAAGGCAATGGCTTTGAAGCTGAGGATTGGAGAACTCC 360
Query 361 TTATTTCAATCCTACCTCAGATAATGTCTTTATGTTGATTGGATGTTCTCCTAAATCTCC 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 ATATTTCAATCCTACCTCAGATAATGTCTTTATGTTGATCGGATGTTCTCCTAAATCTCC 420
Query 421 TATATTTCAAGGCTTCCCGGAAAAGAAAGTGCCGTGCCGCAACATCTCTGGAATGAGCTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TATATTTCAAGGCTTCCCGGAAAAGAAAGTGCCGTGCCGCAACATCTCTGGAATGAGCTG 480
Query 481 CGAAGAATACATGTCATGTCCAGCATGGGACATGGTCGGATACAGACAACCGGGTATACA 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 CGAAGAATACATGTCATGTCCAGCTTGGGACATGGTCGGATACAGACAACCGGGTATACA 540
Query 541 TTCCGGTTCAGGTCCACCTATGTGTTGTGCGGTCGGGTTCGAATCCGTAAAAGCAATTAA 600
|||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |||||
Sbjct 541 TTCCGGGTCAGGTCCACCCATGTGTTGTGGGGTCGGGTTCGAATCCGTAAAAGCGATTAA 600
Query 601 TCTAAGTAAGTTGGAGTGTGAAGGATACAGTAGTGCGTATAATCTTGCACCCTTGAAGCT 660
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 601 TCTAAGTAAGTTGGAGTGTGAAGGATACAGTAGTGCGTATAATCTAGCACCCTTGAAACT 660
Query 661 TAGAGGACCCTCTGATTGGGCTTATGGGATACGTGTTAAGTACGAGCTCCAAGGAAGTGA 720
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 661 TAGAGGACCCTCTGATTGGGCTTATGGGATACGTGTTAAGTATGAACTCCAAGGAAGTGA 720
Query 721 TGCGTTTTGTCGTGCGTGTGTTGCAACTTCTGGGACTTGTGGTTATGATGAATCTGCTGA 780
|||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct 721 TGCGTTTTGTCGTGCGTGTGTTGCAACTTCTGGGACTTGTGGCTATGA--AC-CTGCTGA 777
Query 781 TGGTGGACGGCTTAGACATGTTTGCATGTGTGATAACCATAATTCCACTACAAACTGTGA 840
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 778 TGGTGGAGGGCTTAGACATGTTTGCATGTGTGACAACCATAATTCCACTACAAACTGTGA 837
Query 841 TTCAGTTATATCACCAACCGGTGCATCATCAAGTGTTCGACCAAAAACTATCGGATCACT 900
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 838 TTCAGTTATATCACCAACCGGTGCATCATCAAGTGTTCGACCAAAAGCTATCGGATCACT 897
Query 901 GATCATCTACTTCATAACTATGAATATAGGCTTTCAGAGAAGAAAATGATGAGTTACCCT 960
|||||||||||||||| ||||||| |||||||||||||||||| | |||||||||||||
Sbjct 898 GATCATCTACTTCATAGCTATGAACATAGGCTTTCAGAGAAGACAGCGATGAGTTACCCT 957
Query 961 T-TTCTTTT-CAGAGAAGACAAT 981
| || |||| |||||||||||||
Sbjct 958 TCTTTTTTTTCAGAGAAGACAAT 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5