BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495089
Length=1989
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50300.1 | Symbols: AZG2, ATAZG2 | Xanthine/uracil permease ... 2815 0.0
> AT5G50300.1 | Symbols: AZG2, ATAZG2 | Xanthine/uracil permease
family protein | chr5:20466068-20468124 REVERSE LENGTH=2057
Length=2057
Score = 2815 bits (1524), Expect = 0.0
Identities = 1848/2000 (92%), Gaps = 40/2000 (2%)
Strand=Plus/Plus
Query 1 CTCCTGCATTTGCTCCCTATATTCCTCATTATTATTAGCCATGGGTAGAGAGAAGAAGTT 60
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||
Sbjct 1 CTCCTGCATTTGCTCCCTATATTCCTCATTATTATTAGTCATGGGAAGAGAGAAGACGTT 60
Query 61 ATGCAAGTCGTGGAACGACATGAAGAAACACTTAAACGACACCGTTTCCAAGAGTTTCGC 120
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 ATGCAAGTCGTGGAGCGACATGAAGAAACACTTAAACGACACCGTTTCCAAGAGCTTCAT 120
Query 121 CGGTCGTTTCTTCAAACTAGAAGCAAGGAAAACAACTTTCACAACCGAACTACGAGCTGC 180
||| ||||||||||| || |||||||| |||||||| |||||||| ||||||||||||||
Sbjct 121 CGGCCGTTTCTTCAAGCTCGAAGCAAGAAAAACAACGTTCACAACTGAACTACGAGCTGC 180
Query 181 AACCGCCACATTCCTCACCATGGCTTATATCATTACTGTTAACGCCAATATCTTAGCCGA 240
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 181 GACCGCCACATTCCTCACCATGGCTTATATCATTACCGTGAACGCCAATATCTTAGCCGA 240
Query 241 CTCCGGTGCCACTTGCTCCTTCCACGACTGCTCCGCTGTGGCCGGTTCTTCAGCACCCGG 300
||||||||||||||||||| || ||||||| ||| | |||||| |||||||| |||||||
Sbjct 241 CTCCGGTGCCACTTGCTCCATCAACGACTGTTCCACCGTGGCCAGTTCTTCACCACCCGG 300
Query 301 TCCAGAGTGCGTCCTTGGTTCTAATCCAGGCTACGAAGAATGTCTTGCTAGGGTTAAAAA 360
|||||| |||||||| || ||||| || ||||||||| ||||| || |||||||||||||
Sbjct 301 TCCAGAATGCGTCCTCGGGTCTAACCCTGGCTACGAACAATGTATTTCTAGGGTTAAAAA 360
Query 361 GGACCTCGTTGTGGCTACTTCTTTATCAGCCATGGTTGGTTCATTAGCAATGGGTTTGTT 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 GGACCTCGTTGTGGCTACTTCTTTATCAGCCATGGTGGGTTCATTAGCAATGGGTTTGTT 420
Query 421 AGCTAATCTCCCTTTTGGACTTGCTCCGGGTATGGGAGCCAATGCTTACATCGCATACAA 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 AGCTAATCTCCCTTTTGGACTTGCTCCGGGTATGGGAGCCAACGCTTACATCGCATACAA 480
Query 481 CGTAGTCGGCTTTCGTGGCTCTGGTTCAATCTCTTACCATACCGCTATGGCCATCGTGCT 540
||| ||||| |||||||| || ||||| |||||||| ||||||||||||||||| |||||
Sbjct 481 CGTTGTCGGGTTTCGTGGATCCGGTTCTATCTCTTATCATACCGCTATGGCCATTGTGCT 540
Query 541 GCTTGAAGGATGCGCGTTTCTAGCGGTTTCCGCTTTAGGACTCCGCGGGAAACTAGCTCG 600
||||||||||| || ||||| || || || ||||||||||||||||||||||| |||||
Sbjct 541 CCTTGAAGGATGTGCCTTTCTCGCTGTGTCGGCTTTAGGACTCCGCGGGAAACTTGCTCG 600
Query 601 TCTCATCCCTCAAACGGTGAGACTGGCCTGCGCGGTTGGTATAGGAATGTTCATAGCCTT 660
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 601 TCTCATCCCTCAAACGGTGAGACTGGCCTGCGCGGTCGGTATAGGAATGTTCATTGCCTT 660
Query 661 TGTCGGTTTGCAGATGAACCAGGGTATTGGCCTCGTGGGACCGGATAAGTCAACTCTAGT 720
||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 TGTAGGTTTACAAATGAACCAGGGCATTGGCCTCGTGGGACCGGATAAGTCAACTCTAGT 720
Query 721 GACATTAACCGCTTGCGCAGAGACGGATTCTGTCACTGGAGCTTGCTTAGGAGGGAAAAT 780
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 721 GACATTAACCGCCTGCGCAGAGACGGATCCTGTCACTGGAGCTTGCTTAGGAGGTAAAAT 780
Query 781 GAAGAGTCCTACGTTTTGGTTAGCCGTTGTAGGGTTTCTCATAACGAGCTTT-GGTCTAA 839
|||||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||||
Sbjct 781 GAAGAGTCCTACGTTTTGGTTAGCCGTTGTCGGGTTTCTTATAACGAG-TTTCGGTCTAA 839
Query 840 TGAAGAACGTCAAAGGTAGTATGATTTATGGAATCGTGTTCGTTACGGCTGTTTCTTGGA 899
|||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||
Sbjct 840 TGAAGAACGTCAAAGGTAGTATGATTTACGGAATCGTGTTCGTCACGGCTATTTCTTGGA 899
Query 900 TTAGAGGCACTCAAGTCACAATCTTTCCACACACTCCTCTTGGAGACTCAAACTATAACT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 TTAGAGGCACTCAAGTCACAATCTTTCCACACACTCCTCTTGGAGACTCAAACTACAACT 959
Query 960 ACTTCACAAAAATCGTTGACTTTCACAAGATCCAGTCAACGTTAGGAGCTATAAGCTTCA 1019
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 960 ACTTCACAAAAATCGTTGACTTTCACAAGATCCAGTCAACTTTAGGAGCCATAAGCTTCA 1019
Query 1020 CGGAGTTTAGAAAGAGCGAGGTTTGGGTTGCGTTCGCTACACTCTTTTACGTTGACCTCC 1079
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1020 CGGAGTTTAGAAAGAGCGAGGTTTGGGTCGCGTTCGCTACACTCTTCTACGTTGACCTTC 1079
Query 1080 TTGGCACGACCGGAGTACTCTACACGATGGCTGAGATCGGAGGCTTCGTGGAAGACGGGA 1139
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1080 TTGGTACGACCGGAGTACTCTACACAATGGCTGAGATCGGAGGATTCGTGGAAGATGGGA 1139
Query 1140 AGTTCGAAGGAGAGTACGCGGCTTACTTAGTGGACGCCGGCTCCTCCGTGGTGGGATCGG 1199
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1140 AGTTTGAAGGAGAGTACGCGGCGTACTTAGTAGACGCCGGCTCCTCCGTGGTGGGATCGG 1199
Query 1200 CGTTAGGGGTTACAACGACAGCGACTTTCGTGGAGTCTTCGGCGGGGTTGAAAGAAGGAG 1259
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1200 CGTTAGGTGTTACAACGACGGCGACTTTTGTGGAGTCTTCGGCGGGGTTGAAAGAAGGAG 1259
Query 1260 GGAAAACGGGGCTAACAGCCGTTATTGTAGGAG-TGTATTTCTTGGCGTCGATGTTTTTG 1318
|||||||||||||||| |||||||| ||||| | |||||||||||||||| ||||||||
Sbjct 1260 GGAAAACGGGGCTAACGGCCGTTATCGTAGG-GTTGTATTTCTTGGCGTCAATGTTTTTT 1318
Query 1319 ACGCCGTTAGTGACTAACGTGCCGAGGTGGGCGGTTGGGCCGTCGTTGGTGATGGTTGGT 1378
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1319 ACGCCGTTAGTTACTAACGTGCCGAGGTGGGCGGTTGGACCGTCGTTGGTGATGGTTGGT 1378
Query 1379 GTGATGATGATGGGAGTTGTAAAAGATATTAGATGGGGAGAGACTAAAGAAGCCGTGACG 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GTGATGATGATGGGAGTTGTAAAAGATATTAGATGGGGAGAGACTAAAGAAGCCGTGACA 1438
Query 1439 GCATTTGTAACGATCTTGCTTATGCCGTTGACTTATTCCATTGCTAATGGGATTATTGCT 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GCATTTGTAACGATCTTGCTTATGCCGTTGACTTATTCCATTGCTAATGGGATTATTGCT 1498
Query 1499 GGTATTGGTATATATCTTGCTTTAAGCATGTACGATGTCGTTTTGGGAGTTGCCAAGTGG 1558
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 1499 GGTATTGGTATATATCTTGCATTAAGCATGTACGATGTCGTTTTGGGAGTTGCAAAATGG 1558
Query 1559 CTTAATGGTGTTAGGAAACGGGTTATGAGAGAGCATAATCAAGTTTCCTCCGTTGCTACC 1618
||||| || ||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1559 CTTAACGGGGTTAGAAAACGGGTTATGAGAGAGCATAATCAAGTTTCTTCCGTCGCTACC 1618
Query 1619 GTCGAGATCGTTTGATTGTTGACGATAACCGATGTCACGAAACCGGTTTTAGTGgtgtgt 1678
||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||
Sbjct 1619 GTCGAGATCGTTTGATTATTAACGATAACCGATGTCACAAAACTGGTTTTAGTGGTGTGT 1678
Query 1679 g--tgtgtACCGGAAGTGGTGGAACTTTTCACATGGTCGGTCGTTGGATGACAAAGCAAA 1736
| |||||||||||| |||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 1679 GAGTGTGTACCGGAACTGGTGGAATTTTTCACATGGTCGGTCGTTGGATGACCATGCAAA 1738
Query 1737 GACCCGTCATGAATGCT-T---TATTTTATGTTCT-T---------------GTTGTTTT 1776
||||||||||||||||| | | |||| | |||| | ||||||||
Sbjct 1739 GACCCGTCATGAATGCTCTCGGTGTTTTTTTTTCTCTTTCTTTTACTTTCTTGTTGTTTT 1798
Query 1777 GGTTTAGTTTGCGTAGGAGAGAGTAGTGAAGTAACATTGGATGCATCAGCTGCCATGAAC 1836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 GGTTTAGTTTGCGTAGGAGAGAGTAGTGAAGTAACATTGGATGCATCAGCTGCCATGAAC 1858
Query 1837 GTGTATT-G-TAATT-CATGGCTGCTTGTGCATGCATTGTT-C------GTAGGGTTCTA 1886
|||| || | ||||| | ||||||||||||||||||||||| | |||||||||||
Sbjct 1859 GTGTGTTTGATAATTTCTTGGCTGCTTGTGCATGCATTGTTTCTACTTTGTAGGGTTCTA 1918
Query 1887 T-GCTTCAACAAAATGCTTCTTTTGTTTGTAGCATAT-T-TCAATCAAAGACTTTTGGGT 1943
| | |||||| |||||||||||||||||||||||||| | |||||||||||||| || ||
Sbjct 1919 TTGTTTCAACTAAATGCTTCTTTTGTTTGTAGCATATATGTCAATCAAAGACTTCTGAGT 1978
Query 1944 CCTTCATAAATTGTTAAATT 1963
|||||| |||||| |||||
Sbjct 1979 CCTTCAGAAATTGC-AAATT 1997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98543669835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5