BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495090
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50310.1 | Symbols: | Galactose oxidase/kelch repeat superf... 3424 0.0
> AT5G50310.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:20474487-20479455 FORWARD LENGTH=2250
Length=2250
Score = 3424 bits (1854), Expect = 0.0
Identities = 2114/2239 (94%), Gaps = 20/2239 (1%)
Strand=Plus/Plus
Query 1 AAGGGCTACTTCCATTGTAATCGC-ACTTCTTCGCTCTCAGCCTCCAAACACACATCAAA 59
|||||||| || |||||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 16 AAGGGCTAGTTTCATTGTAAACGCTA-ATCTTCGCTCTCAGCCTCCAAACACACATCAAA 74
Query 60 CATGGGGAAGAAGACGAAGAAGCCTGGTAAAGGAAAGGAGAAAACTGAGAGAAAAACCGC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CATGGGGAAGAAGACGAAGAAGCCTGGTAAAGGAAAGGAGAAAACTGAGAGAAAAACCGC 134
Query 120 CAAAGCCGATGAGAAGAAAGCTCGTCGAGAAGGCAAAAAGCTCTCTCCTGAAGATGACAT 179
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 135 CAAAGCGGATGAGAAGAAAGCTCGTCGAGAGGGCAAAAAGCTTTCTCCTGAAGATGACAT 194
Query 180 CGACGCCATTCTCCTGAGCATACAAAAGGAGGAGGCTAAGAAGAAAGAGGTTCATGTTGA 239
||| ||||||||| ||| || || |||||||||||||||||||||||||| ||||||||
Sbjct 195 CGATGCCATTCTCTTGAATATTCAGAAGGAGGAGGCTAAGAAGAAAGAGGTCCATGTTGA 254
Query 240 GGAAAATGTGCCAGCACCATCTCCTAGGTCAAACTGCTCGCTCACTATAAATCCATTGAA 299
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 255 GGAAAATGTGGCAGCACCATCTCCTAGGTCAAACTGTTCGCTCACTATAAATCCTTTGAA 314
Query 300 AGAGACTGAGTTGATACTCTATGGCGGTGAATTTTATAATGGCCAGAAGACCTATGTATA 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 315 AGAGACTGAGTTGATACTCTATGGCGGTGAATTTTATAATGGCCAGAAGACATATGTATA 374
Query 360 TGGTGATCTCTACCGATATGATGTCGATAAGCAGGAGTGGAAGTCAATTTCAAGCCCGAA 419
|||||||||||||||||||||||| || |||||||||||||||| | |||||||||| ||
Sbjct 375 TGGTGATCTCTACCGATATGATGTAGAGAAGCAGGAGTGGAAGTTAGTTTCAAGCCCCAA 434
Query 420 CAGTCCACCTCCTCGTAACTCTCATCAGGCAGTTGCTTGGAAAAATTATCTCTACATATT 479
|||||||||||||| | ||||||||| |||||||||||||| |||||||||||||||||
Sbjct 435 TAGTCCACCTCCTCGCAGCTCTCATCAAGCAGTTGCTTGGAAGAATTATCTCTACATATT 494
Query 480 TGGCGGTGAATTTACATCTCCAAATCAAGAGAGGTTCCACCACTACAAGGACTTTTGGAT 539
||| ||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||
Sbjct 495 TGGTGGTGAATTTACATCTCCGAATCAAGAGCGTTTCCATCACTACAAGGACTTTTGGAT 554
Query 540 GCTGGATGTGAAAACTAATCAGTGGGAGCAATTAAATTTGAAGGGATGTCCTAGTCCACG 599
|||||| ||||||||||| || |||||||| || ||||||||||||||||||||||||||
Sbjct 555 GCTGGACGTGAAAACTAACCAATGGGAGCAGTTGAATTTGAAGGGATGTCCTAGTCCACG 614
Query 600 TTCTGGTCATCGCATGGTATTATACAAGCACAAGATTATAATTTTTGGTGGCTTCTATGA 659
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 615 TTCTGGTCATCGTATGGTATTATACAAGCACAAGATCATAATTTTTGGTGGCTTCTATGA 674
Query 660 CACTCTACGTGAAGTAAGGTATTACAATGATCTCTATGTGTTTGACCTGGACCAATACAA 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 TACTCTACGTGAAGTAAGGTATTACAATGATCTCTATGTGTTTGACCTGGACCAATACAA 734
Query 720 GTGGCAAGAAATCAAACCTAAGCCTGGTGCCTTGTGGCCTACAGCTAGAAGCGGCTTCCA 779
|||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 735 GTGGCAAGAAATAAAACCTAAGCCTGGTGCCATGTGGCCTACAGCTAGAAGTGGCTTCCA 794
Query 780 GTTTTTTGTTTATCAAGATGAGATATTCTTATATGGTGGTTATTCAAAAGAAGTCTCATC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 GTTTTTTGTTTATCAAGATGAGATATTCTTATATGGTGGTTATTCAAAAGAAGTCTCATC 854
Query 840 CGAGAAGAGCTCTGAGAAAGGAATTGTTCATGCAGATTTGTGGTCTCTTGATCCCAGGAC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 CGAGAAGAGCTCTGAGAAAGGAATTGTTCATGCAGATTTGTGGTCTCTTGATCCCAGGAC 914
Query 900 TTGGGAATGGAACAAAGTGAAGAAAATTGGGATGCCTCCTAGCTCCCGTGCCGGCTTTTC 959
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 915 TTGGGAATGGAACAAAGTGAAGAAAATTGGGATGCCACCTAGCTCCCGTGCCGGATTTTC 974
Query 960 GGTATGTGTTCACAAAAAGCGTGCTTTGCTGTTTGGGGGTGTCGTGGACATGGAAATGGA 1019
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GGTATGTGTCCACAAAAAGCGTGCTTTGCTGTTTGGGGGTGTCGTGGACATGGAAATGGA 1034
Query 1020 AGGTGATGTAATGATGAGTTTATTCTTAAACGAACTCTACGGCTTCCAGTTAGATAATCG 1079
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1035 AGGTGATGTAATGATGAGTTTATTCTTAAATGAACTCTATGGCTTCCAGTTAGATAATCG 1094
Query 1080 TCGCTGGTACCCAATAGAGTTACGAAAAGAAAAATCAACAAAAGACAAGGCAAAGAAGAA 1139
||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||
Sbjct 1095 TCGCTGGTACCCAATAGAGTTACGAAAAGAAAAATCATCAAAAGATAAGGCGAAGAAGAC 1154
Query 1140 TTTAGAGACAAAACCTGTGGCATCTAATAATGATGATGAGATGGATTCAACAGAAGAAGA 1199
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 TTTGGAGGCAAAACCTGTGGCATCTAATAATGATGATGAGATGGATTCAACAGAAGAAGA 1214
Query 1200 TGAATCATCGGCCATGATTGAGCAA-CGTGATGGAGTAGGCTCCTCGGATGGGATATCTG 1258
|||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1215 TGAATCATTGGCCATGATTGAGCAAAC-TGATGGAGTAGGCTCCTCGGATGGGATATCTG 1273
Query 1259 ATCGTATGGCAGCAGGTCTAACTGTTGATGGAAATAGATCTGATAAAAGTAAGGCTCTAC 1318
| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1274 AACGTATGGCAACAAATCTAACTGTTGATGGAAATAGGTCTGATAAAAGTAAGGCTCTAC 1333
Query 1319 AGGGAGCAAAAGCTAGACTAGATCCACAAGTTTCGGTCTCAGAGGAGGTTATAAAACCAT 1378
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1334 AGGGAGCAAAAACTAGACTAGATCCACAAGTTTCGGTCTCAGAGGAGGTTGTAAAACCAT 1393
Query 1379 GTGGACGTATCAATTCTTGTATGGTCGTTGGGAAGGATACCTTATACATATATGGTGGCA 1438
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 GTGGACGTATTAATTCCTGTATGGTCGTTGGGAAGGATACCTTATACATATATGGTGGCA 1453
Query 1439 TGATGGAGATAAAAGATAAAGAAGTTACTCTTGATGATTTGTATTCGCTTAATCTAAGCA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1454 TGATGGAGATAAAAGATAAAGAAGTTACTCTTGATGATTTGTATTCGCTTAATCTTAGCA 1513
Query 1499 AACTTGACGAGTGGAAGTGTATCATTCCGGCGACTGAAACTGAGTGGGTGGAAGTATCAG 1558
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||
Sbjct 1514 AACTTGACGAGTGGAAGTGTATCATTCCGACGACTGAAACTGAGTGGGTAGAAGTCTCAG 1573
Query 1559 AGGACGAAGAAGGGGACGAAGACgaagatgaagatgatagcgaagatgaaggaaacagtg 1618
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1574 ATGACGAAGAAGGGGACGAAGACGACGATGAAGATGATAGTGAAGATGAAGGAAACAGTG 1633
Query 1619 aagagtctgatga--a-gatgacgatgaagaagTAGAGGCAATGGATGTTGATGGATCAG 1675
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 AAGAGTCTGATGATGAAGATGACGATGAAGAAGTAGAGGCAATGGATGTTGATGGATCAG 1693
Query 1676 TGAAAGTTGGAGAAGTTGTTGCAATGATAAAAGGAGAAGGAAAATCCCTCCGAAGAAAAG 1735
||||||| |||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1694 TGAAAGTGGGAGTTGTTGTTGCAATGATAAAAGGACAAGGAAAATCTCTCCGAAGAAAAG 1753
Query 1736 AGAAACGAGCTCGGATAGAACAGATTAGAGCTAATCTAGGACTTTCAGATTCACAGAGAA 1795
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1754 AGAAACGAGCTCGGATTGAACAGATTAGAGCTAATCTAGGACTTTCAGATTCACAGAGAA 1813
Query 1796 CCCCAGTGCCTGGAGAAACTTTGAAGGATTTCTATAAGCGTACAAATATGTACTGGCAAA 1855
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1814 CCCCAGTGCCTGGAGAAACTTTGAAGGATTTCTATAAGCGCACAAATATGTACTGGCAAA 1873
Query 1856 TGGCTGCCTACGAGCATACCCAACATACCGGCAAGGAGCTGCGGAAGGATGGTTTTGATC 1915
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1874 TGGCTGCCTACGAGCATACCCAACATACTGGCAAGGAGCTGCGAAAGGATGGTTTTGATC 1933
Query 1916 TCGCAGAAACTCGGTATCTGGAACTCAAACCCATTCTAGATGAGTTGGCAATACTTGAGG 1975
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1934 TTGCAGAAACTCGGTATCTTGAACTCAAACCCATTCTAGATGAGTTGGCAATACTTGAGG 1993
Query 1976 CCGAGCAAAAGGCTGAAGAAGCAGAAGGACCTGAAGCAAGTAGTAGCTCTAGAAAAGGAG 2035
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1994 CCGAGCAAAAGGCTGAAGAAGCAGAAGGACCTGAAGCTAGTAGTAGCTCTAGAAAAGGAG 2053
Query 2036 GTATTGCAAAGAAGAAGAGATAAAGCTTTTGCAGCCTCAGCAGTAA-TT--GTTATCTCA 2092
|||||||||||||||||||||||||||||||||| | | | | || ||||| |
Sbjct 2054 GTATTGCAAAGAAGAAGAGATAAAGCTTTTGCAGTTTT-GAA-TCGCTTTAGTTATGA-A 2110
Query 2093 GTTTTGA-ATCTTTTTAGAAAGAGTGAAAATTTTGAGGAA-AACTGCAAATTCCTACATG 2150
| | | | | |||| |||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2111 GCTGTAACA-CTTTAAAGAAAGAGTGAAAATTTTGAGGAAGAA-TGCAAATTCCTACATG 2168
Query 2151 AATTATAACGATTTGTTATGATACAATACATACCCGAACGACTTGTGTTGATTCCTACAT 2210
|| ||| || |||||||||| | | ||||||| ||||| |||||||||||||||| |||
Sbjct 2169 AACTATGGCGTTTTGTTATGA-A-A-TACATACACGAACAACTTGTGTTGATTCCTGCAT 2225
Query 2211 GAACTAAACTATTTTAGCT 2229
|||||||| ||||||||||
Sbjct 2226 GAACTAAATTATTTTAGCT 2244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110591800635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5