BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495092
Length=2203
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50320.1 | Symbols: ELO3, HAG3, HAC8, ELP3, AtELP3 | radical... 3042 0.0
AT5G50315.1 | Symbols: | transposable element gene | chr5:2047... 387 3e-106
> AT5G50320.1 | Symbols: ELO3, HAG3, HAC8, ELP3, AtELP3 | radical
SAM domain-containing protein / GCN5-related N-acetyltransferase
(GNAT) family protein | chr5:20480626-20484850 REVERSE
LENGTH=2311
Length=2311
Score = 3042 bits (1647), Expect = 0.0
Identities = 1801/1874 (96%), Gaps = 15/1874 (1%)
Strand=Plus/Plus
Query 1 GTTTTTGCGACGATGGCGACGGCGGTAGTGATGAACGGCGAGCTGAAAAAGCAACCTCGG 60
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 GTTTTGGTGACGATGGCGACGGCGGTAGTGATGAACGGCGAGCTGAAAAAGCAACCTCGG 87
Query 61 CCAGGTAAAGGCGGCTATCAGGGCCGTGGATTAACTGAAGAAGAAGCTAGAGTCCGCGCT 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 88 CCAGGTAAAGGCGGCTATCAGGGCCGTGGATTAACTGAAGAAGAAGCTCGAGTTCGCGCC 147
Query 121 ATATCGGAGATTGTCAGCACCATGATTGAGCGCTCACACCGCAACGAGAATGTTGACCTA 180
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 148 ATATCGGAGATTGTTAGCACCATGATTGAGCGTTCACACCGCAACGAGAATGTTGACCTA 207
Query 181 AACGCAATTAAAACCGCCGCTTGCCGGAAATACGGCTTAGCGCGTGCGCCAAAGCTTGTG 240
|||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||
Sbjct 208 AACGCAATTAAAACCGCCGCTTGCCGGAAATACGGCCTAGCACGTGCGCCTAAGCTCGTG 267
Query 241 GAGATGATCGCTGCGCTTCCTGATTCAGAGAGAGAGACTCTTCTCCCGAAGCTCCGTGCT 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GAGATGATTGCTGCGCTTCCTGATTCAGAGAGAGAGACTCTTCTCCCGAAGCTCCGTGCC 327
Query 301 AAACCGGTCCGAACAGCTTCAGGAATCGCAGTCGTGGCGGTTATGTCGAAGCCTCATAGG 360
|||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 328 AAACCGGTTCGAACAGCTTCAGGGATCGCCGTTGTGGCGGTTATGTCGAAGCCTCATAGG 387
Query 361 TGTCCGCATATAGCTACGACGGGTAATATATGTGTGTATTGTCCCGGTGGACCTGACTCT 420
|| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 388 TGCCCGCATATAGCTACGACGGGGAATATATGCGTTTATTGTCCCGGTGGACCTGACTCT 447
Query 421 GACTTTGAGTATAGTACTCAGTCTTACACTGGATACGAGCCCACCAGTATGCGAGCTATT 480
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 448 GACTTTGAGTATAGTACTCAGTCTTACACTGGATATGAGCCTACCAGCATGCGAGCTATT 507
Query 481 CGAGCCAGGTACAATCCATACGTTCAGGCAAGAAGCAGGATAGATCAGCTGAAGCGGTTG 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 508 CGAGCCAGGTACAATCCATATGTTCAGGCAAGAAGCAGGATAGATCAGCTGAAGCGGTTG 567
Query 541 GGTCACAGTGTAGATAAGGTTGAGTTCATTTTGATGGGAGGTACTTTCATGTCACTGCCA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GGTCACAGTGTAGATAAGGTTGAGTTCATTTTGATGGGAGGTACTTTCATGTCACTGCCT 627
Query 601 GCTGAGTACCGGGATTTCTTCATACGGAATCTTCATGATGCTTTATCAGGACACACTTCT 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 GCTGAGTATCGGGATTTCTTCATACGGAATCTTCATGATGCTTTATCAGGACACACTTCT 687
Query 661 GCCAATGTTGAAGAAGCAGTTGCATATTCTGAACATAGTGCAACTAAATGCATTGGGATG 720
||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 688 GCCAACGTTGAAGAGGCAGTTGCTTACTCTGAACATAGTGCAACTAAATGCATTGGGATG 747
Query 721 ACGATAGAAACGAGGCCAGATTACTGCCTTGGACCTCATCTACGACAAATGCTGACTTAC 780
|| || ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 748 ACAATTGAAACGAGGCCAGATTACTGCCTTGGACCTCATTTACGACAAATGCTGATTTAC 807
Query 781 GGTTGCACCCGGCTGGAGATAGGTGTCCAGAGCACATACGAAGATGTTGCCCGTGACACA 840
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 808 GGTTGCACCCGGCTAGAGATAGGTGTCCAGAGCACATATGAAGATGTTGCCCGTGACACA 867
Query 841 AATAGAGGCCATACTGTTGCTGCGGTAGCCGACTGCTTCTGCTTGGCTAAAGATGCTGGT 900
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 868 AATAGAGGTCATACTGTTGCTGCTGTAGCTGACTGCTTCTGCTTGGCTAAAGATGCTGGT 927
Query 901 TTCAAGGTGGTTGCACATATGATGCCTGATCTTCCTAATGTTGGGGTTGAGAGAGACATG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 TTCAAGGTGGTTGCACATATGATGCCTGATCTTCCTAATGTTGGGGTTGAGAGAGACATG 987
Query 961 GAAAGTTTCAAGGAATTTTTCGAGAGCCCATCTTTTAGAGCAGATGGGTTAAAAATATAT 1020
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GAAAGTTTCAAGGAGTTTTTCGAGAGCCCATCTTTTAGAGCAGATGGGTTAAAAATATAT 1047
Query 1021 CCCACCCTTGTGATCCGTGGAACTGGACTTTATGAACTATGGAAAACTGGGAGGTACCGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 CCCACCCTTGTGATCCGTGGAACTGGACTTTATGAACTATGGAAAACTGGGAGGTACCGA 1107
Query 1081 AACTATCCACCTGAGCAGCTTGTGGATATAGTTGCAAGGATTCTCTCCATGGTACCTCCA 1140
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 AATTATCCACCTGAGCAGCTTGTGGATATAGTTGCAAGGATTCTCTCCATGGTACCTCCA 1167
Query 1141 TGGACACGTGTTTATAGAGTTCAGCGTGATATTCCTATGCCTCTGGTTACGTCAGGGGTT 1200
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 TGGACACGTGTATATAGAGTTCAGCGTGATATTCCTATGCCTCTGGTTACGTCAGGGGTA 1227
Query 1201 GAAAAAGGAAATCTTCGTGAACTGGCTTTAGCCAGAATGGATGACTTGGGCCTTAAATGC 1260
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1228 GAAAAAGGAAATCTTCGTGAACTGGCTCTAGCCAGAATGGATGACTTGGGCCTTAAATGC 1287
Query 1261 CGTGATGTTCGTACTCGTGAAGCTGGAATTCAGGACATTCATCATAAAATTAAGCCAGAA 1320
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 CGTGATGTCCGTACTCGTGAAGCTGGAATTCAGGACATTCATCATAAAATTAAGCCAGAA 1347
Query 1321 CAAGTAGAGCTTGTGCGTCGTGATTACACTGCCAATGAAGGTTGGGAGACGTTCCTTTCT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 CAAGTAGAGCTTGTGCGTCGTGATTACACTGCCAATGAAGGTTGGGAGACGTTCCTTTCT 1407
Query 1381 TATGAAGATACACGCCAGGACATTCTTGTTGGGTTGCTACGATTGCGAAAATGCGGGAAG 1440
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1408 TATGAAGATACACGCCAGGACATTCTTGTTGGATTGCTACGTTTGCGAAAATGCGGGAAG 1467
Query 1441 AATGTAACGTGTCCAGAACTCATGGGAAAGTGTTCTGTTGTCCGTGAGCTTCATGTATAC 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 AATGTAACGTGTCCAGAACTCATGGGAAAGTGTTCTGTTGTCCGTGAGCTTCATGTATAC 1527
Query 1501 GGAACAGCTGTACCAGTTCATGGTCGAGAGGCTGATAAGTTGCAACATCAGGGATATGGT 1560
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1528 GGAACAGCTGTACCAGTTCATGGTCGAGATGCTGATAAGTTGCAACATCAGGGCTATGGT 1587
Query 1561 ACACTTCTGATGGAAGAAGCAGAGAGGATTGCTAGAAGAGAACATCGATCTAACAAAATC 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 ACACTTCTGATGGAAGAAGCAGAGAGGATTGCTAGAAGAGAACATCGATCTAACAAAATC 1647
Query 1621 GGTGTGATTTCTGGTGTAGGAACCCGACATTACTACAGAAAGTTGGGTTATGAATTGGAA 1680
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1648 GGTGTGATTTCTGGTGTAGGAACCAGACATTACTACAGAAAGTTGGGTTATGAATTGGAA 1707
Query 1681 GGTCCTTACATGGTGAAGCATCTTCTTT-AAATTTCTGTTTACTTAAAAACCAAATTCGT 1739
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1708 GGTCCTTACATGGTGAAGCATCTTCTTTGAAATTA-TGTTTACTTAAAAACCAAATTCGT 1766
Query 1740 AAAC-CTTTGTGTTGAACTAGTGAGAT----CCCTTTGAGTGGTATCATTTTTGCTCTTT 1794
||| |||| ||||||||||||||||| ||||| | |||||||||||| |||||||
Sbjct 1767 AAAATCTTTATGTTGAACTAGTGAGATTAATCCCTT-G--TGGTATCATTTT-GCTCTTT 1822
Query 1795 AAACTTTT-ATAGTCAAAAAGTTGAGAAAACGGTTAATTCCTAAACGAACTATGGCGATC 1853
||| |||| |||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1823 AAA-TTTTCATAGTCAAAAAGTTGAGAAAACGGCTAATTCCTTCACGAACTATGGCGAT- 1880
Query 1854 TTT-TAAGAATAAT 1866
||| ||||| ||||
Sbjct 1881 TTTGTAAGATTAAT 1894
Score = 387 bits (209), Expect = 3e-106
Identities = 254/274 (93%), Gaps = 10/274 (4%)
Strand=Plus/Plus
Query 1938 AAGATTGACTTGGTTCTTCGTTGTAGTCTAGAGCCATAAACTCAAATCCTTCATCTGATG 1997
||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 2040 AAGATTGACTTGGCTCTTCGTTGTAGTCTAGATCCATGAACTCAAATCCTTCATCTGATG 2099
Query 1998 TGTTGCGATTCTTAGGTCTTATATACTCCACCCCTACATTACCACACTTCCTCGTGTTGT 2057
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2100 TGTTCCGATTCTTCGGTCTTATATACTCCACCCCAACATTACCACACTTCCTCGTATTGT 2159
Query 2058 GTCCAATTAGACCACATCTGCCACAGCGAACAATCCTTCCCTCTCTCGTAACTTTGGTTA 2117
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2160 GTCCAATTACACCACATCTGCCACAACGAACAATCCTTCCCTCTCTCGTAACTTTGGTTA 2219
Query 2118 CCTTCACTGGAG-A--CTCTTGCACTCCCCTTTTTC-TTTTCAG-ATTCTTACTTCTCTC 2172
|||||||||||| | |||||||||| || |||||| |||| || |||||||||||||||
Sbjct 2220 CCTTCACTGGAGGAGACTCTTGCACTTCC-TTTTTCCTTTT-AGGATTCTTACTTCTCTC 2277
Query 2173 ---ATGAAACTCCACAGAAGAATCAGGGCTTGAG 2203
|||||||||||||||||||||||||||||||
Sbjct 2278 CTCATGAAACTCCACAGAAGAATCAGGGCTTGAG 2311
> AT5G50315.1 | Symbols: | transposable element gene | chr5:20479591-20481077
FORWARD LENGTH=1487
Length=1487
Score = 387 bits (209), Expect = 3e-106
Identities = 254/274 (93%), Gaps = 10/274 (4%)
Strand=Plus/Minus
Query 1938 AAGATTGACTTGGTTCTTCGTTGTAGTCTAGAGCCATAAACTCAAATCCTTCATCTGATG 1997
||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1307 AAGATTGACTTGGCTCTTCGTTGTAGTCTAGATCCATGAACTCAAATCCTTCATCTGATG 1248
Query 1998 TGTTGCGATTCTTAGGTCTTATATACTCCACCCCTACATTACCACACTTCCTCGTGTTGT 2057
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1247 TGTTCCGATTCTTCGGTCTTATATACTCCACCCCAACATTACCACACTTCCTCGTATTGT 1188
Query 2058 GTCCAATTAGACCACATCTGCCACAGCGAACAATCCTTCCCTCTCTCGTAACTTTGGTTA 2117
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1187 GTCCAATTACACCACATCTGCCACAACGAACAATCCTTCCCTCTCTCGTAACTTTGGTTA 1128
Query 2118 CCTTCACTGGAG-A--CTCTTGCACTCCCCTTTTTC-TTTTCAG-ATTCTTACTTCTCTC 2172
|||||||||||| | |||||||||| || |||||| |||| || |||||||||||||||
Sbjct 1127 CCTTCACTGGAGGAGACTCTTGCACTTCC-TTTTTCCTTTT-AGGATTCTTACTTCTCTC 1070
Query 2173 ---ATGAAACTCCACAGAAGAATCAGGGCTTGAG 2203
|||||||||||||||||||||||||||||||
Sbjct 1069 CTCATGAAACTCCACAGAAGAATCAGGGCTTGAG 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109286586465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5