BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495093
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50330.1 | Symbols: | Protein kinase superfamily protein | ... 2560 0.0
AT4G24810.2 | Symbols: | Protein kinase superfamily protein | ... 1280 0.0
> AT5G50330.1 | Symbols: | Protein kinase superfamily protein
| chr5:20485223-20488684 REVERSE LENGTH=1744
Length=1744
Score = 2560 bits (1386), Expect = 0.0
Identities = 1537/1609 (96%), Gaps = 13/1609 (1%)
Strand=Plus/Plus
Query 1 CGATCTCTATCAACTTCATCGTTTCTTCCGTTAAAGCTTTCAAATTTGATACGTTCGAAA 60
||||||| ||||||||||||| |||||||| |||||||||| |||||||| || |||
Sbjct 18 CGATCTCGATCAACTTCATCGCTTCTTCCG--AAAGCTTTCACATTTGATA---TCAAAA 72
Query 61 TCGAGATACACAAATTGAAAACAATCTG-TTCTCCaaaagaaaaagaaaaaaaTGCATGG 119
|||||| ||| ||||||||||||||||| ||| || || |||||||| |||||||||||
Sbjct 73 TCGAGAAACAAAAATTGAAAACAATCTGTTTCACC--AA-AAAAAGAACAAAATGCATGG 129
Query 120 GTTCGATTTCAAAGAGATTCAGGAGAAGATCTCCGAGAGCTTTCGTCCATGGCAACGCTC 179
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 130 GTTCGATTTCAAAGAGATCCAGGAGAAGATCTCCGATAGCTTTCGTCCATGGCAACGCTC 189
Query 180 TTTTCATTTCTGGGTTCGAGCTACTAATATCTACACAGGCTACAAGGTGTTTCAACTTCG 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TTTTCAATTCTGGGTTCGAGCTACTAATATCTACACAGGCTACAAGGTGTTTCAACTTCG 249
Query 240 AGTGAGTTTAGTGAAAGATGCAAAGAAGCAAGAGGAAATGTGGGAAAGACAACATGAGCA 299
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 250 AGTAAGTTTAGTAAAAGATGCAAAGAAGCAAGAGGAAATGTGGGAAAGACAACATGAACA 309
Query 300 AGCTGCTGATAAAATCTACTTCATGTGCTCTGACCTTGGGGGTTTCTTCCTTAAGATTGC 359
|||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 310 AGCTGCTGATAAGATTTACTTCATGTGCTCTGATCTTGGTGGTTTCTTCCTTAAGATTGC 369
Query 360 TCAACTTTTAGCAAAACCTGACATGGCACCAGCTGCTTGGGTGAAAAAGCTTGTAACTTT 419
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 370 TCAACTTTTAGCAAAACCTGACATGGCACCAGCTGCGTGGGTGAAAAAGCTTGTCACTTT 429
Query 420 GTGTGATCAAGCTCCTGCGACGCCGTTTGATGCAATTCAACTTGTTCTAGAGAAGGAGTT 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 430 GTGTGATCAAGCTCCTGCGACGCCGTTTGATGCGATTCAACTTGTTCTAGAGAAGGAGTT 489
Query 480 AGGTAAAAGCATTGGTGAAATCTTTGAAACATTTGATGAAAAGCCGCTTGGTTCTGCTTC 539
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 490 AGGTAAAAGCATTGGTGAAATCTTTGAAACGTTTGATGAAAAGCCTCTTGGTTCTGCTTC 549
Query 540 TATTGCTCAGGTTCACAGAGCAAGAGTAAAGGGTAACAAGATGAATGTTGTTGTAAAGGT 599
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 550 TATTGCTCAGGTTCATAGAGCAATAGTAAAGGGTAACAAGATGAATGTTGTTGTAAAGGT 609
Query 600 TCAACACCCTGGCATCGAAAGGTTGATGATGACAGACATTAGAAACTTGCAACTATTCGC 659
|||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 610 TCAACATCCTGGCATTGAAAGATTGATGATGACAGACATAAGAAACTTGCAACTATTCGC 669
Query 660 CTTATACATGCAGAGAACAGATATCAAATTTGACCTGCATTCCATAACCAAGGAAATGGA 719
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 670 CTTATACATGCAGAGAACAGATATCAAATTTGACCTGCATTCCATAACAAAGGAAATGGA 729
Query 720 GAAACAGATTGGTTATGAATTTGACTTCAAAAGGGAGGCCAGTGCAATGGAAAGAATTCG 779
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 730 GAAACAGATTGGTTATGAATTTGACTTCAAAAGGGAGGCCAATGCAATGGAAAGAATTCG 789
Query 780 ATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGTACCAAGAGTTCTGCGAGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 ATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGTACCAAGAGTTCTGCGAGA 849
Query 840 TATGGTGACTAAGAGGGTTTTGGTGATGGAATACATTAATGGAATTCCAATTCTGAGCAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 850 TATGGTGACTAAGAGGGTTTTGGTGATGGAATACATTAATGGAATTCCAATCCTGAGCAT 909
Query 900 TGGTGATGAGATGGCTAAAAGAGGGATAAATCCTCATGGTAAGATTGCAGAGGCAGCAAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TGGTGATGAGATGGCTAAAAGAGGGATAAATCCTCATGGTAAGATTGCAGAGGCAGCAAA 969
Query 960 GCACAATATACTTAGCAGTTTATCCCGTGCGTATGGCCAAATGATACTGAAAAGTGGTTT 1019
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 GCACAATATACTTAACAGTTTATCCCGTGCGTATGGCCAAATGATACTGAAAAGTGGTTT 1029
Query 1020 CTTTCATGCGGATCCACATCCTGGAAATATCTTGATTTGCAAAGGTCAAGAGGTTGCACT 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1030 CTTTCATGCGGATCCACATCCTGGAAATATCTTGATTTGCAAAGGTCAAGAGGTTGCATT 1089
Query 1080 GCTGGACTATGGTCAAGTGAAGGAACTACCCGACAAGTTGAGACTTGGTTATGCGAATTT 1139
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1090 GCTGGACTATGGTCAAGTGAAGGAACTACCCAACAAGTTGAGACTTGGTTATGCAAATTT 1149
Query 1140 GGTCATTGCCATGGCTGATGACAATGCTTCAGGAGTATCACAGAGCTTTTGGGAAATGGG 1199
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1150 GGTCATTGCCATGGCTGATAACAATGCTTCACGAGTATCACAGAGCTTTTGGGAAATGGG 1209
Query 1200 TTTGCGTACAGTGGCCAAGTGTGTGAACGAGCAGCAAGAACTTCTGCGGTTAGCACAAAC 1259
||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1210 TTTACATACAGTGGCCAAGTGTGAGAATGAGCAGCAAGAACTTCTGCGGTTAGCACAAAC 1269
Query 1260 ACTTTTCGATACAAAGATGCC-AGCTGGTCAGACAGTTTTGCAACCATTCTCAGATGACT 1318
|||||| |||||||||||||| | |||||||||||||||| ||||| |||||||||||||
Sbjct 1270 ACTTTTTGATACAAAGATGCCTA-CTGGTCAGACAGTTTTACAACCTTTCTCAGATGACT 1328
Query 1319 CTTCGATTAAAAAGATAGCCGTTGAGACATTTCCAGAGGAACTGTTCTCTGTACTTCGTA 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1329 CTTCGATTAAAAAGATAGCCGTTGAGACATTTCCAGAGGAACTGTTCTCTGTACTTCGCA 1388
Query 1379 CTGTGGTTCTGTTAAGAGGACTCAGTGTTGGGATGAGAGTTAATTACTCATGTGCACAAC 1438
||||||||||||||||||||||||||||||||||| |||||||||| || |||||| |||
Sbjct 1389 CTGTGGTTCTGTTAAGAGGACTCAGTGTTGGGATGGGAGTTAATTATTCGTGTGCAGAAC 1448
Query 1439 AGTGGAGATCAATGGCCGAAGAGGCTTTACTTGCATCTGGAAGAATAACAAGAGATGGCA 1498
| |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1449 AATGGAGAGCAATGGCCGAAGAGGCTTTACTTGCATCTGGAAGAGTGACAAGAGATGGCA 1508
Query 1499 AAGGAAGATCTCGTAGACAGGCTTCTCT-CGGAAGGCTACGCCCAGGAAGTTAGGAAAAG 1557
||| |||||||||||||| ||||||||| || |||||||||| ||||||||||||||||
Sbjct 1509 AAGAAAGATCTCGTAGACGGGCTTCTCTACG-AAGGCTACGCACAGGAAGTTAGGAAAAA 1567
Query 1558 GATAGGAGTATTTATCATCACTTAGACTCTCCCATGAGCAGGATCTGAG 1606
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1568 GATAGGAGTATTTCTCATCACTTAGACTCTCCCATGAGCAGGATCTGAG 1616
Score = 82.4 bits (44), Expect = 1e-14
Identities = 46/47 (98%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 1606 GTGAGAATTTGAATGATAGGAGAAGTTGGATAAGACTTGAATGTAAT 1652
||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1644 GTGAGAATTTGAATGATAGGAGAAGTTGGATAACACTTGAATGTAAT 1690
> AT4G24810.2 | Symbols: | Protein kinase superfamily protein
| chr4:12786627-12789713 REVERSE LENGTH=1725
Length=1725
Score = 1280 bits (693), Expect = 0.0
Identities = 1165/1392 (84%), Gaps = 36/1392 (3%)
Strand=Plus/Plus
Query 109 aaaaTGCATGGGTTCGATTTCAAAGAGATTCAGGAGAAGATCTCCGA-GAGCTTTCGTCC 167
|||||||||| | |||||||||||||||||||||||||| |||| || | | || || ||
Sbjct 113 AAAATGCATGCGATCGATTTCAAAGAGATTCAGGAGAAGCTCTCTGATG-GATTCCGGCC 171
Query 168 ATGGCAACGCTCTTTTCATTTCTGGGTTCGAGCTACTAATATCTACACAGGCTACAAGGT 227
|||||||| || ||||| ||||||| ||| || ||| |||||||||| || ||||||||
Sbjct 172 TTGGCAACGATCGTTTCAGTTCTGGGCTCGTGCCACTGATATCTACACCGGATACAAGGT 231
Query 228 GTTTCAACTTCG-AGTGAGTTTAGTGAAAGATGCAAAGAAGCAAGAGGAAATGTGGGAAA 286
||||||||||| | ||| || || || |||| || ||||| ||||| |||||||| |
Sbjct 232 ATTTCAACTTCGTA-TGAACTTCGTCAAGGATGTTAATAAGCACGAGGAGATGTGGGAGA 290
Query 287 GACAACATGAGCAAGCTGCTGATAAAATCTACTTC-ATGTGCTCTGACCTTGGGGGTTTC 345
|||||||||| | |||||| ||||| | || ||| ||||||||||||||||| ||||||
Sbjct 291 GACAACATGAACTTGCTGCTCATAAAGTTTA-TTCTATGTGCTCTGACCTTGGTGGTTTC 349
Query 346 TTCCTTAAGATTGCTCAACTTTTAGCAAAACCTGACATGGCACCAGCTGCTTGGGTGA-A 404
|||||||||||||| ||| || ||| ||||||||| |||| |||||||||||||||| |
Sbjct 350 TTCCTTAAGATTGCACAAATTCTAGGGAAACCTGACTTGGCTCCAGCTGCTTGGGTGAGA 409
Query 405 AAAGCTTGTAACTTTGTGTGATCAAGCTCCTGCGACGCCGTTTGATGCAATTCAACTTGT 464
||| || || ||||||||||||||||||||||| || || |||||||| ||| | ||||
Sbjct 410 AAA-CTCGTCACTTTGTGTGATCAAGCTCCTGCCACACCATTTGATGCCGTTCGAGTTGT 468
Query 465 TCTAGAGAAGGAGTTAGGTAAAAGCATTGGTGAAATCTTTGAAACATTTGATGAAAAGCC 524
|| ||||| ||||||||||||||||| | || | ||||||||||||||||| |||||
Sbjct 469 CCTGGAGAAAGAGTTAGGTAAAAGCATCGAACAAGTGTTTGAAACATTTGATGAGAAGCC 528
Query 525 GCTTGGTTCTGCTTCTATTGCTCAGGTTCACAGAGCAAGAGTAAAGGGTAACAAGATGAA 584
||||| |||||||||||||||||||| ||| ||||||||||||||||| |||||| | |
Sbjct 529 TCTTGGCTCTGCTTCTATTGCTCAGGTACACCGAGCAAGAGTAAAGGGTGACAAGAGGGA 588
Query 585 TGTTGTTGTAAAGGTTCAACACCCTGGCATCGA-AAGGTTGATGATGACAGACATTAGAA 643
||||||||||||||| ||||| |||||| | || || |||||||||| || || ||||
Sbjct 589 TGTTGTTGTAAAGGTCCAACATCCTGGCGTTGAGAA-GTTGATGATGGTTGATATCAGAA 647
Query 644 ACTTGCAACTATTCGCCTTATACATGCAGAGAACAGATATCAAATTTGACCTGCAT-TCC 702
|||||||| |||| || ||||||||||||| ||| ||||||||||||||| || | |||
Sbjct 648 ACTTGCAAATATTTGCATTATACATGCAGAAAACTGATATCAAATTTGACTTG-TTCTCC 706
Query 703 ATAACCAAGGAAATGGAGAAACAGATTGGTTATGAATTTGACTTCAAAAGGGAGGCCAGT 762
|| || |||||||| ||||| |||||||| |||||||| ||||| ||||||||||||| |
Sbjct 707 ATGACAAAGGAAATAGAGAAGCAGATTGGGTATGAATTCGACTTTAAAAGGGAGGCCAAT 766
Query 763 GCAATGGA-AAGAATTCGATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGT 821
|||||||| ||| || ||| ||||||| ||||| ||||| | |||| ||||||| ||||
Sbjct 767 GCAATGGAGAAG-ATCCGACGTTTTCTATATGATAACAATAGAAAGAGTCCTGTTCTGGT 825
Query 822 ACCAAGAGT-TCTGCGAGATATGGTGACTAAGAGGGTTTTGGTGATGGAATACATTAATG 880
|| || || | | | | || ||||||| | || |||| |||| ||||||| ||| || |
Sbjct 826 TCCCAGGGTGT-TTCCAAATTTGGTGACCAGGAAGGTTCTGGTTATGGAATTCATGAACG 884
Query 881 GAATTCCAATTC-TGAGCATTGGTGATGAGATGGCTAAAAGAGGGATAAATCCTCATGGT 939
|||| || | || ||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 885 GAATCCCGA-TCTTGAGCCTTGGTGATGAGATGGCAAAAAGAGGGATAAATCCTCATGGT 943
Query 940 AAGATTGCAGAGGCAGCAAAGCACAATATACTTA-GCAGTTTATCCCGTGCGTATGGCCA 998
|| || |||||||||||||| |||||||| || |||||| |||| || ||||||||
Sbjct 944 AAAATGGCAGAGGCAGCAAAATTCAATATAC-TACACAGTTTGTCCCAAGCATATGGCCA 1002
Query 999 AATGATACTGAAAAGTGGTTTCTTTCATGCGGATCCACATCCTGGAAATATCTTGATTTG 1058
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1003 AATGATACTGAAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTGG 1062
Query 1059 CAAAGGT-CAAGAGGTTGCACTGCTGGACTATGGTCAAGTGAAGGAACTACCC-GACAAG 1116
|||||| || |||||||||||||||||||||||||||||||| ||||| ||| ||| |
Sbjct 1063 TAAAGGTTCA-GAGGTTGCACTGCTGGACTATGGTCAAGTGAAAGAACT-CCCTGACCAC 1120
Query 1117 TTGAGACTTGGTTATGCGAATTTGGTCATTGCCATGGCTGATGACAATGCTTCA--GGAG 1174
|||||||||||||||| |||||||| |||||||| |||||| ||||||| ||| || |
Sbjct 1121 CTGAGACTTGGTTATGCAAATTTGGTAATTGCCATCGCTGATAACAATGCGTCATTGGCG 1180
Query 1175 TATCACAGAGCTTTTGGGAAATGGGTTT-GCGTACAGTGGCCAAGTGTGTGAACGAGCAG 1233
| | |||||||||| ||||| | ||| | || |||||| ||||||||| ||| |||||
Sbjct 1181 T-T-ACAGAGCTTTAGGGAACTTGGTATAGC-TACAGTAGCCAAGTGTAAGAATGAGCAA 1237
Query 1234 CAAGAACTTCTGCGGTTAGCACAAACACTTTTCGATACAAAGATGCCAGCTGGT-CAGAC 1292
||||| ||||| | ||||||| ||||| | ||||| ||| ||||||| ||||| | |||
Sbjct 1238 CAAGAGCTTCTCCAGTTAGCAAAAACAATGTTCGACACAGAGATGCCTCCTGGTAC-GAC 1296
Query 1293 AGTTTTGCAACCATTCTCAGATGACTCTTCGATTAAAAAGATAGCCGTTGAGACATTTCC 1352
| | ||||||| |||||||| ||||||||||| |||||||| | |||||| |||||||
Sbjct 1297 AACTCTGCAACCTTTCTCAGAAGACTCTTCGATCAAAAAGATTTCGGTTGAGGCATTTCC 1356
Query 1353 AGAGGAACTGTTCTCTGTACTTCGTACTGTGGTTCTGTTAAGAGGACTCAGTGTTGGGAT 1412
||||||||| |||||||| ||||| || || |||||||||||||||||||| || |||||
Sbjct 1357 AGAGGAACTCTTCTCTGTTCTTCGCACAGTAGTTCTGTTAAGAGGACTCAGCGTAGGGAT 1416
Query 1413 -GAG-AGTTAATTACTCATGTGCACAACAGTGGAGATCAATGGCCGAAGAGGCTTTACTT 1470
| | | |||||||||| || || ||||| ||||| | ||||| ||||||||||| | |
Sbjct 1417 TG-GCA-TTAATTACTCCTGCGCTCAACACTGGAGGGCTATGGCAGAAGAGGCTTTGCAT 1474
Query 1471 GCATCTGGAAGA 1482
||||||||||||
Sbjct 1475 GCATCTGGAAGA 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81626086170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5