BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495095

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50335.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   448    3e-125


> AT5G50335.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:20489094-20489727 
REVERSE LENGTH=634
Length=634

 Score =  448 bits (242),  Expect = 3e-125
 Identities = 279/296 (94%), Gaps = 5/296 (2%)
 Strand=Plus/Plus

Query  38   TCCTACACTAAATTCTCTGAGCTCTTTGCACCAAAAAGAGAATGGTGTgcagagcagaag  97
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  73   TCCTACACTAAATTCTCTGAGCTCTTT-CACCAAAAAGAGAATGGTGTGCAGAGCAGAAG  131

Query  98   aagcaatgaagcaaagagagatgatcaagagatgcaaagaagatgatcgttatcagaaga  157
            ||||||||||||| |||| ||| || |||||||| ||||||||||||||| |||||||||
Sbjct  132  AAGCAATGAAGCAGAGAGGGATCATAAAGAGATGTAAAGAAGATGATCGTCATCAGAAGA  191

Query  158  agaagatACAATCAATCACTAATTGCAACAAAGAAAAAGGTTGCAGATTCAAGCGAAGCA  217
            ||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct  192  AGAAGATGCAATCAATCACAAATTGCAACAAAGAAAAAAGTTGCAGATTCAAGCGAAGCA  251

Query  218  CTAGTAAGCTCGACAACGATGGAGCTTCCTCAGCCATCTTCCTCCTAGCTTGCATCGCCT  277
            ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  252  CTAGTAATCTCGATAACGATGGAGCTTCCTCAGCCATCTTCCTCCTAGCTTGCATCGCCT  311

Query  278  GCTCATCCTTCTCTTATCATCTCTAACTATCAACATATCT-T-T--GTTGTAACAG  329
            |||||||||||||||||||||||||||||||||||||| | | |  ||||||||||
Sbjct  312  GCTCATCCTTCTCTTATCATCTCTAACTATCAACATATATATCTTAGTTGTAACAG  367



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22354195415


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5