BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495100
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50370.1 | Symbols: | Adenylate kinase family protein | chr... 1600 0.0
> AT5G50370.1 | Symbols: | Adenylate kinase family protein | chr5:20509159-20510703
REVERSE LENGTH=1042
Length=1042
Score = 1600 bits (866), Expect = 0.0
Identities = 987/1043 (95%), Gaps = 17/1043 (2%)
Strand=Plus/Plus
Query 1 CGCACTTCAAAAACAGAAC-C--CACCACCGGACCAAATCTAATTCTC-TGTAAGAGACG 56
||||||||||||| ||||| | | ||||||||||||||||||||||| ||| | ||| |
Sbjct 1 CGCACTTCAAAAAGAGAACACAACTCCACCGGACCAAATCTAATTCTCTTGT-A-AGA-G 57
Query 57 AGTCGACGACGACGAACATGGCCACGAGCAGTACCGCTTCTGTTGATTTGGAAGATATTC 116
| ||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||||
Sbjct 58 A--CGACGACGACGAACATGGCAACGAGCAGTGCGGCTTCTGTTGATATGGAAGATATTC 115
Query 117 AGACCGTTGATCTCATGTCTGAGCTTCTTCGCCGCATGAAATGTGCCTCTAAACCTGACA 176
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 116 AGACTGTTGATCTCATGTCTGAGCTTCTTCGCCGTATGAAATGTGCCTCTAAACCTGACA 175
Query 177 AACGTCTCGTTTTCATCGGTCCACCTGGTTCAGGCAAAGGTACACAGTCTCCAGTCATAA 236
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 176 AACGTCTCGTTTTCATCGGTCCACCTGGTTCAGGGAAAGGTACACAGTCTCCGGTCATAA 235
Query 237 AGGATGAGTTTTGTTTGTGCCATTTGTCTACTGGTGACATGCTTAGAGCTGCTGTTGCTG 296
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 236 AGGATGAGTTTTGTTTGTGTCATTTGTCTACTGGTGACATGCTTAGAGCTGCTGTTGCTG 295
Query 297 CTAAGTCCCCTCTTGGTGTTAAGGCAAAGGAAGCAATGGATAAGGGAGAGCTTGTTTCTG 356
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTAAGACTCCTCTTGGTGTGAAGGCAAAGGAAGCAATGGATAAGGGAGAGCTTGTTTCTG 355
Query 357 ATGACTTGGTTGTTGGTATCATGGATGAAGCCATGAACAGACCCAAATGTCAGAAAGGTT 416
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 356 ATGACTTGGTTGTTGGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGAAAGGTT 415
Query 417 TCATTCTTGATGGGTTCCCGCGGACTGTGACCCAAGCAGAGAAGCTTGATGAGATGCTTA 476
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 416 TCATTCTTGATGGGTTCCCGCGGACTGTGACTCAAGCAGAGAAGCTTGATGAGATGCTTA 475
Query 477 ATAGAAGGGGAGCTCAGATTGATAAGGTGCTTAATTTTGCGATCGATGACTCGGTTCTGG 536
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 476 ATAGAAGGGGAGCTCAGATAGATAAGGTGCTTAATTTTGCGATCGATGATTCGGTTCTCG 535
Query 537 AAGAAAGAATTACTGGAAGGTGGATTCACCCTTCAAGTGGAAGAAGCTATCATACTAAAT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AAGAAAGAATTACTGGAAGGTGGATTCACCCTTCAAGTGGAAGAAGCTATCATACTAAAT 595
Query 597 TCGCACCTCCTAAAGTTCCCGGAGTCGATGATCTGACTGGAGAGCCATTGATTCAACGTA 656
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TCGCACCTCCTAAAGTTCCAGGAGTCGATGATCTGACTGGAGAGCCATTGATTCAACGTA 655
Query 657 AAGATGACAATGCGGATGTTCTTAGATCAAGGCTGGATGCATTCCACAAGCAGACGCAAC 716
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 656 AAGATGACAATGCGGATGTTCTTAGATCAAGGCTAGATGCATTCCACAAGCAGACGCAAC 715
Query 717 CGGTAATTGACTACTACGCGAAGAAGGGGAATCTGGTGAACATACCAGCAGAGAAGGCCC 776
||||||||||||| || |||||||||| |||||||||||||||||| |||||||||||||
Sbjct 716 CGGTAATTGACTATTATGCGAAGAAGGAGAATCTGGTGAACATACCGGCAGAGAAGGCCC 775
Query 777 CGGAAGAGGTTACGAAAGTGGTGAAGAAGGTTTTGTCTACATGAAACTGAAAAATGAAAT 836
||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 776 CGGAAGAGGTTACAAAAGTGGTGAAGAAGGTTGTGTCTACATGAAACTGAAAAACGAAAT 835
Query 837 GGCATCAGTTTAAGATGTATCttttttttCTTATTTTAAA-AACTCTCCTGAGttttttt 895
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 836 GGCATCAGTTTAAGATGTATCTTTTTTTGCTTATCTTAAATAACTCTCCTGAGTTTTTTT 895
Query 896 -t--GCTCCCCCCGGAATGTCGTCTTTTTTCTTGAGAGCAACATTTGCTGCAGTTTTGTG 952
| | | ||||||||||||| | ||| | ||||||||||||||||||||||||||||||
Sbjct 896 ATTTGTTTCCCCCGGAATGTC-T-TTTGT-CTTGAGAGCAACATTTGCTGCAGTTTTGTG 952
Query 953 CAGTGTGTTTCACTAAGGTTTATTGTTTGCGACTGGTTATGTCAGGTGAATAAAGACAAA 1012
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 953 CAGTGTGTTTCACTAAGGCTTATTGTTTGCGACTGGAAATGTCAGGTGAATAAAGG-AAA 1011
Query 1013 AACAAAATGGTAGTAAAATGGTG 1035
|||||||| |||||||||| |||
Sbjct 1012 AACAAAATCGTAGTAAAATAGTG 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5