BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495101
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50375.2 | Symbols: CPI1 | cyclopropyl isomerase | chr5:2051... 1214 0.0
> AT5G50375.2 | Symbols: CPI1 | cyclopropyl isomerase | chr5:20511667-20514249
FORWARD LENGTH=1212
Length=1212
Score = 1214 bits (657), Expect = 0.0
Identities = 724/756 (96%), Gaps = 5/756 (1%)
Strand=Plus/Plus
Query 102 CGGCGGAGCGATTATGTCAGGATCATCTTCTCCGAGCTTGTGGCTGGCACCGAATCCTAG 161
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 177 CGGCGGAGCGATTATGTCAGGATCTTCTTCACCGAGCTTGTGGCTGGCACCGAATCCGAG 236
Query 162 CAAAAGATGGGGAGAGCTCTTCTTCCTCTTCTACACTCCTTTTTGGCTCACTCTCTGTTT 221
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CAAGAGATGGGGAGAGCTCTTCTTCCTCTTCTACACTCCTTTTTGGCTCACTCTCTGTTT 296
Query 222 AGGCATCGTTGTCCCTTACAAGCTCTACGAGACATTCACGGAGTTGGAGTATCTGCTTCT 281
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 AGGCATCGTTGTTCCTTACAAGCTTTACGAGACATTCACGGAGTTGGAGTATCTGCTTCT 356
Query 282 AGCTTTGGTTTCAGCTGTTCCTGCTTTCGTTATACCGATGTTACTCGTTGGAAAGGTTAT 341
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 357 AGCTTTGGTTTCAGCTGTTCCTGCTTTCGTTATACCCATGTTACTCGTTGGAAAGGC--- 413
Query 342 CGACACAAGTTTATGTTGGAAGGACCGCTATTGGGTTAAGGCAAATCTCTGGATAATTAT 401
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 414 CGACAGAAGTTTATGTTGGAAGGACCGCTATTGGGTTAAGGCAAATCTCTGGATAATTGT 473
Query 402 GTTCAGCTATGTGGGAAACTATTTTTGGACTCACTATTTCTTTAAAGTTCTTGGAGCATC 461
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 474 TTTCAGCTATGTCGGAAACTACTTTTGGACTCACTATTTCTTTAAAGTTCTTGGAGCGTC 533
Query 462 CTATACTTTTCCATCGTGGAAAATGAATAACGTGCCTCACACAACATTCTTCCTAACACA 521
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 534 CTATACTTTTCCATCATGGAAAATGAATAATGTGCCTCACACAACATTCTTCCTAACACA 593
Query 522 TGTTTGCTTCCTCTTTTACCACGTTGCATCGAACATTACACTTCGAAGGCTACGACATTC 581
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 594 TGTTTGCTTCCTCTTTTACCACGTTGCATCGAACATTACTCTTCGGAGGCTACGCCATTC 653
Query 582 CACTGCTGATTTACCAGATTCTCTGAAATGGTGTTTTGAGGCTGCATGGATACTGGCGCT 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 654 CACTGCTGATTTACCAGATTCTCTGAAATGGTGTTTTGAGGCTGCATGGATACTTGCGCT 713
Query 642 TTCTTATTTCATTGCATACTTGGAGACTATTGCTATTGCAAATTTTCCTTACTACGAGTT 701
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 714 TTCTTATTTCATTGCATACTTGGAGACTATTGCTATCGCAAATTTTCCTTACTATGAGTT 773
Query 702 TGTAGACCGAAGTGCCATGTACAGAGTTGGGTGT-TTGTTCTATGCCATTTACTTCATAG 760
||| |||||||||||||||||||||||||| ||| || |||||||||||||||||||| |
Sbjct 774 TGTGGACCGAAGTGCCATGTACAGAGTTGGATGTCTT-TTCTATGCCATTTACTTCATTG 832
Query 761 TGAGCTTTCCAATGTTCTTCAGGATGGATGAGAAATCAAGTGATGAATGGGATTTATCTC 820
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 833 TGAGCTTCCCAATGTTCTTCAGGATGGATGAGAAATCAACTGATGAATGGGATTTATCTC 892
Query 821 GAGTGGCTGTTGATGCTTTGGGTGCTGCTATGTTGG 856
||||||||||||||||||||||||||||||||||||
Sbjct 893 GAGTGGCTGTTGATGCTTTGGGTGCTGCTATGTTGG 928
Score = 130 bits (70), Expect = 3e-29
Identities = 89/97 (92%), Gaps = 6/97 (6%)
Strand=Plus/Plus
Query 1 ATGAGCGAGCGGATCTAG-TTATCGTCAAAATCATCA-GA--GAGTACATCTGCCACGTC 56
|||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||
Sbjct 31 ATGAGCGAGCGGATCTAGCTT-TCGTCAAAATCATCATCACTGAGTACATCTGCCACGTC 89
Query 57 AGCTTGATTGGGATACTATTTGGTCGCCCGTACTCAA 93
|||||||||||||| |||||||||||||||||| |||
Sbjct 90 AGCTTGATTGGGAT-CTATTTGGTCGCCCGTACACAA 125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58282832745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5