BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495104
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50390.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 3164 0.0
> AT5G50390.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:20520789-20522980 REVERSE LENGTH=2106
Length=2106
Score = 3164 bits (1713), Expect = 0.0
Identities = 1977/2108 (94%), Gaps = 4/2108 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATTCCACTCGCACGTTACCAAAGCATAAGGTTAGACGAGATTCGAGACTCTTCT 60
||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGATTCCACTCTCGCGTTACCAGAGCATAAGATTAGACGAGATTCGAGACTCTTCT 60
Query 61 TCCAATCAAAAGGTTTTCAATTTCCCGCGAAAATTCTCGTTACGAGGAAGAAGATGGAAG 120
||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCAATCCCAAGGTTCTCACTTTCCCGCGAAAATTCTCGTTACGAGGAAGAAGATGGAAG 120
Query 121 AATCCATTTGGGAGAATCACG-TGTTCTTCTGTAGTTCAAGGGCTGAAACCAAAACCAAA 179
|| |||||||| ||| ||| | |||||||||||||||||||| |||||||||||||||||
Sbjct 121 AACCCATTTGGAAGACTCA-GTTGTTCTTCTGTAGTTCAAGGTCTGAAACCAAAACCAAA 179
Query 180 GCTGAAACCAGAACCAATTAGAATCGATGTTGAGGAATCGAAAGATCAGGTTTTTGATGA 239
||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||||
Sbjct 180 GCTGAAACCAGAACCAATTAGAATCGAGGTTAAGGAATCGAAAGATCAGATTTTGGATGA 239
Query 240 TACCCAGATCAGGAAATCTGGTGTGAGGATTTGTAGTCAGATAGAGAAGTTGGTTTTGTG 299
|||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 240 TACCCAGATCAGTAAATCTGGTGTAACGATTTGTAGTCAGATAGAGAAGTTGGTTTTGTG 299
Query 300 TAATAGGTTCAGAGAAGCTTTTGAATTGTTTGAGATTCTGGAGATTCGATGTAGTTTTAA 359
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TAATAGATTCAGAGAAGCTTTTGAATTGTTTGAGATTCTGGAGATTCGCTGTAGTTTTAA 359
Query 360 GGTTGGTGTTAGTACTTATGATGCTTTAGTTGAAGCTTGTATTCGTTTGAAATCGATTCG 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 GGTTGGTGTTAGTACTTATGATGCTTTAGTGGAAGCTTGTATTCGTTTGAAATCGATTCG 419
Query 420 GTGTGTTAAAAGGGTTTATGGGTTTATGATCAGTAATGGGTTTGAGCCGGAGAAGTATAT 479
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 420 GTGTGTTAAAAGGGTTTATGGGTTTATGATGAGTAATGGGTTTGAGCCGGAGCAGTATAT 479
Query 480 GATGAATAGAATCTTGTTGATGCATGTGAAATGTGGGATGATTATTGATGCACGTAGCTT 539
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 480 GATGAACAGAATCTTGTTGATGCATGTCAAGTGTGGGATGATTATTGATGCACGTAGGTT 539
Query 540 GTTTGATGAAATGCCTGAGAGAAACTTGTTTTCTTATAACTCTATTATTTCCGGGTTTGT 599
|||||||||||| ||||||||||| |||| ||||||| |||| ||||| || ||||||||
Sbjct 540 GTTTGATGAAATCCCTGAGAGAAATTTGTATTCTTATTACTCGATTATCTCTGGGTTTGT 599
Query 600 TAATTTTGGGAACTATGAAGAAGCTTTTGAGCTGTTTAAGATGATGTGGGAGGAGCTTTC 659
|||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 TAATTTTGGGAATTATGTTGAAGCTTTTGAGTTGTTTAAGATGATGTGGGAGGAGCTTTC 659
Query 660 GGATTGTGAGACTCATACATTTGCGGTGATGCTTCGTGCGTCGGCTGGGTTAGGGTCTGT 719
||||||||||||||||| |||||||||||||| || || |||||||| ||||||||| |
Sbjct 660 TGATTGTGAGACTCATACGTTTGCGGTGATGCTACGGGCCTCGGCTGGCTTAGGGTCTAT 719
Query 720 TTATGTGGGGAAACAGTTACACGTTTGTGCATTGAAATTAGGAGTTGTTGATAATACGTT 779
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 720 TTATGTGGGGAAACAGTTACACGTTTGTGCGTTGAAGTTAGGAGTTGTTGATAATACCTT 779
Query 780 CGTCTCATGTGGATTGATTGATATGTATAGCAAGTGTGGGGACATTGAAGATGCTCGATG 839
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 TGTCTCGTGTGGATTGATTGATATGTATAGCAAGTGTGGGGATATTGAAGATGCTCGATG 839
Query 840 TGCTTTTGAGAGTATGCCTGAGAAAACTACTGTTGCTTGGAACAATATCGTAGCAGGTTA 899
|||||||||| ||||||| |||||||||||||||||||||||||| | | || |||||
Sbjct 840 TGCTTTTGAGTGTATGCCCGAGAAAACTACTGTTGCTTGGAACAACGTTATTGCGGGTTA 899
Query 900 TGCGCTTCATGGTTATAGTGAGGAAGCTCTGTGTTTTTTGTATGAGATGCGCGACTCAGG 959
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 900 TGCGCTTCATGGTTATAGTGAGGAAGCTCTGTGTTTGTTGTATGACATGCGAGACTCAGG 959
Query 960 TGTGTCTATGGACCAGTTCACACTTTCGATAATGATAAGAATTTCTACAAGGCTTGCAAA 1019
||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 TGTGTCTATTGATCAGTTCACACTTTCGATAATGATAAGAATTTCTACAAAGCTTGCAAA 1019
Query 1020 ACTTGAGCTTACTAAGCAGGCACACGCTAGTTTAATTCGAAGCGGTTTTGAATCAGAAAT 1079
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1020 GCTTGAGCTTACTAAGCAGGCACACGCTAGTTTAATTCGAAACGGTTTTGAATCGGAAAT 1079
Query 1080 CGTCGCAAACACGGCTCTTGTGGATTTTTATAGCAAATGGGGTAGAGTAGATACTGCTAG 1139
||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1080 CGTTGCAAACACAGCTCTTGTAGACTTTTATAGCAAATGGGGTAGAGTAGATACTGCTAG 1139
Query 1140 ATATGTTTTCGATAAATTACCGAGGAAAAATATAATTTCATGGAACGCTTTGATGGGTGG 1199
||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1140 ATATGTTTTTGATAAATTGCCGAGAAAAAATATAATCTCATGGAACGCTTTGATGGGTGG 1199
Query 1200 ATATGCAAATCATGGTAGAGGAACCGATGCTGTTAGGTTGTTTGAGAGAATGATTGCTGC 1259
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||
Sbjct 1200 ATATGCAAATCATGGTAGAGGAACTGATGCTGTTAAGTTGTTTGAGAAAATGATTGCAGC 1259
Query 1260 AAAAGTAGCTCCAAACCACGTCACATTTCTTGCAGTTTTATCAGCTTGTGCCTATTCAGG 1319
||| || ||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1260 AAACGTCGCTCCAAACCATGTCACATTTCTTGCAGTTCTATCAGCTTGTGCCTATTCAGG 1319
Query 1320 TTTATCTGAGCAAGGTTGGGAGATTTTTCTATCGATGAATGAGGTTCATGGGATCAAACC 1379
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1320 TTTATCTGAGCAAGGTTGGGAGATTTTTCTATCGATGAGTGAGGTTCATGGGATCAAACC 1379
Query 1380 AAGGGCGATGCATTATGCCTGCATGATTGAGCTGTTGGGTAGAGACGGTTTATTAGATGA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AAGGGCGATGCATTATGCCTGCATGATTGAGCTGTTGGGTAGAGACGGTTTATTAGATGA 1439
Query 1440 AGCCATTGC-TTTCATCAGAAGAGCTCCTTTGAAAACAACGGTGAATATGTGGGCAGCAC 1498
||||||||| ||| ||| ||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1440 AGCCATTGCGTTT-ATCCGAAGAGCTCCTTTGAAAACCACGGTGAACATGTGGGCAGCAC 1498
Query 1499 TCTTGAATGCCTGTAGGATGCAGGGAAACTTAGAGCTTGGAAGAGTGGTTGCTGAAAAAC 1558
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1499 TCTTGAATGCCTGTAGGATGCAGGAAAACTTAGAGCTTGGAAGAGTGGTTGCTGAAAAAC 1558
Query 1559 TCTATGGAATGGGACCCGAGAAGCTGGGAAACTACGTTGTGCTGTATAATATGTACAATA 1618
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
Sbjct 1559 TCTATGGAATGGGACCCGAGAAGCTCGGAAACTACGTTGTGATGTATAATATGTACAACA 1618
Query 1619 GTATGGGAAAAACTGCAGAAGCTGCAGGAGTTTTAGAGACATTGGAGAGCAAAGGTTTAA 1678
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 1619 GTATGGGAAAAACTGCAGAAGCTGCAGGGGTTTTGGAGACATTGGAGAGCAAAGGATTAA 1678
Query 1679 GCATGATGCCGGCTTGTACTTGGGTCGAGGTTGGAGATCAGACTCACAGTTTTCTTTCAG 1738
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1679 GCATGATGCCGGCTTGTACTTGGGTTGAGGTTGGAGATCAGACTCACAGCTTTCTTTCAG 1738
Query 1739 GAGATAGGTTTGATTCTTACAATGAGACGGTGAAAAGGGAAATATACCAAAAAGTGGATG 1798
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1739 GAGATAGGTTTGATTCTTACAATGAGACGGTGAAAAGGCAGATATACCAAAAAGTGGATG 1798
Query 1799 AACTAATGGAAGAAATTTACGAGTATGGGTATTTGGCGGAGGAGAAAAACCTTCTACCAG 1858
||||||||||||| |||| |||||||||||| | | ||||||| || ||||||| ||||
Sbjct 1799 AACTAATGGAAGAGATTTCCGAGTATGGGTACTCAGAGGAGGAGCAACACCTTCTTCCAG 1858
Query 1859 ACGTGGATGAAAAGGAAGAAGAACGAGTAGGGCGATATCACAGCGAGAAGCTTGCGATAG 1918
|||| ||||||||||||||||| |||||||||||||||||||||||||| || || ||||
Sbjct 1859 ACGTAGATGAAAAGGAAGAAGAGCGAGTAGGGCGATATCACAGCGAGAAACTAGCCATAG 1918
Query 1919 CTTATGGATTGATGAATACACCAGAATGGAATCCATTGCAGATAACTCAGAACCATAGGA 1978
|||| |||||| ||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 1919 CTTACGGATTGGTGAATACGCCGGAATGGAATCCATTGCAGATTACTCAGAACCATAGGA 1978
Query 1979 TATGCAAAGATTGTCACAAGGTAATTGAGTTCATATCTCTGGTGACAGGAAGAGAGATGG 2038
|||||||| |||| |||||||| |||||||||||||| |||| |||||| |||||||||
Sbjct 1979 TATGCAAAAATTGCCACAAGGTGGTTGAGTTCATATCTTTGGTTACAGGACGAGAGATGG 2038
Query 2039 TAGTAAGAGACGCGAGCCGGTTCCATCATTTTAAAGAAGGGAAGTGTTCTTGTGGAGGTT 2098
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039 TAGTGAGAGACGCGAGCCGGTTCCATCATTTTAAAGAAGGGAAGTGTTCTTGTGGAGGTT 2098
Query 2099 ATTGGTGA 2106
||||||||
Sbjct 2099 ATTGGTGA 2106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104417133600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5