BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495111
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50440.1 | Symbols: MEMB12, ATMEMB12 | membrin 12 | chr5:205... 1293 0.0
AT2G36900.1 | Symbols: MEMB11, ATMEMB11 | membrin 11 | chr2:154... 745 0.0
> AT5G50440.1 | Symbols: MEMB12, ATMEMB12 | membrin 12 | chr5:20537525-20538943
REVERSE LENGTH=945
Length=945
Score = 1293 bits (700), Expect = 0.0
Identities = 808/860 (94%), Gaps = 7/860 (1%)
Strand=Plus/Plus
Query 1 GATTAGAAGTTGACATTCATATAATTCAGCAAA-AGAAGAAGATTCTGCGGTTTTCTTGG 59
||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||
Sbjct 88 GATTAGAAGTTGATATTGATATAATTCAGCAAAGAGAAGAAGATTCTGCGGTGTTCTTGG 147
Query 60 TCTCTTTTGTGG-TTGTATAATGGCGTCTGGTACAGTGGGAGGGTTGTCTGAGGTATATA 118
|| | ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 148 TCAC-TTTGTGGTTTGTATAATGGCGTCTGGGACAGTGGGAGGGTTGTCTGAGGTATATA 206
Query 119 GTAGTGCAAAAAGGATTCTACTAAGGGCTCGGGACGGAATCGAGAGGTTGGAGAGGTTCG 178
||||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||||
Sbjct 207 GTAGTGCAAAAAGGATTCTACTAAGAGCTCGGAATGGAATCGAGAAGTTGGAGAGGTTCG 266
Query 179 ACTCTGATCCTACCGATCTCTCCTCATCCGTGAAACGAGATATTACTGAGGTTCAATCTC 238
|||||||||||||||| ||| |||| |||||||||||||| ||||| |||||||||||||
Sbjct 267 ACTCTGATCCTACCGACCTCGCCTCCTCCGTGAAACGAGACATTACCGAGGTTCAATCTC 326
Query 239 TTTGTTCCAATATGGACGGTCTCTGGCGTTCGATCCCTGTGAAATCCCAGCGTGATCTTT 298
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 327 TTTGTTCCAATATGGACGGTCTCTGGCGTTCGATCCCTGTCAAATCCCAGCGTGATCTTT 386
Query 299 GGAGAAGAAAGAGTGAACAAGTAGGAGAAGAGGCCGAGTATTTGAACCAAAGTCTGGAGA 358
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 387 GGAGAAGGAAGAGTGAACAAGTAGGAGAAGAGGCTGAGTATTTGAACCAAAGTCTAGAGA 446
Query 359 AATACATGTGGAGGAATCAGAGGAAGATGTTGGAAGCGAAAGAGAGAGCGGATTTGTTAG 418
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 447 AGTACATGTGGAGGAATCAGAGGAAGATGTTGGAAGCTAAAGAGAGAGCGGATTTGTTAG 506
Query 419 GTAGAGGGAGCGGAGAAGGAGCTCATATTTTGCAAATATTTGATGAGGAAGCTCAAGGAA 478
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 507 GTAGAGGGAGTGGAGAAGGAGCTCACATTTTGCAAATATTTGATGAGGAGGCTCAAGGAA 566
Query 479 TGAACTCTGTCAAGAATTCGAAGAGAATGCTCGAAGATTCGTTTCAAAGTGGAGTTGCTA 538
|||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 567 TGAACTCTGTTAAGAATTCAAAGAGAATGCTTGAAGATTCGTTTCAAAGTGGAGTTGCTA 626
Query 539 TCCTCTCCAAATATGCCGAACAAAAGGATCGTTTGAAGAGGGCACAGCGGAAGGCTTTGG 598
| ||||| |||||||| ||||||| ||||||||||||||| || ||| ||||||||||||
Sbjct 627 TTCTCTCTAAATATGCTGAACAAAGGGATCGTTTGAAGAGTGCGCAGAGGAAGGCTTTGG 686
Query 599 ATGTTCTGAACACTGTTGGGCTCTCCAACTCTGTATTGAGGCTCATTGAGAGGCGCAATC 658
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 687 ATGTTCTGAACACTGTTGGGCTCTCTAACTCTGTATTGAGGCTCATTGAGAGGCGTAATC 746
Query 659 GTGTTGATACATGGATTAAATACGCCGGTATGATCGCAACGCTTGTCATATTGTATCTCT 718
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 747 GTGTTGATACCTGGATTAAATATGCGGGTATGATCGCAACGCTTGTCATATTGTATCTCT 806
Query 719 TCATAAGATGGACACGCTAAAACCAGAGAACTTTAATTACATCAC-ATAGATTGTATGTA 777
||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| |
Sbjct 807 TCATAAGATGGACACGCTAGAACCAGAGAACTTTAATTACATTACCATAGATTGTATGGA 866
Query 778 GAGAGTTATGTAACACAttttttttGTTTTGTTTATGCCTCTCACAAGACATTTTCAAAA 837
||||||| |||||||| ||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 867 GAGAGTTTTGTAACACGTTTTTTT-GTTTTGTTTATACCTCTTACAAGACATTTTCAAAA 925
Query 838 CACTAGTATC-CATATTCTC 856
|||||||| | |||||||||
Sbjct 926 CACTAGTA-CACATATTCTC 944
> AT2G36900.1 | Symbols: MEMB11, ATMEMB11 | membrin 11 | chr2:15491435-15492822
REVERSE LENGTH=1006
Length=1006
Score = 745 bits (403), Expect = 0.0
Identities = 562/638 (88%), Gaps = 13/638 (2%)
Strand=Plus/Plus
Query 112 GTATATAGTAGTGCAAAAAGGATTCTACT-AAGGGCTCGGGACGGAATCGAGAGGTTGGA 170
|||||||||||||| |||||||||||||| || |||||| ||||||||||||||||| ||
Sbjct 191 GTATATAGTAGTGCGAAAAGGATTCTACTCAA-GGCTCGCGACGGAATCGAGAGGTTAGA 249
Query 171 GAGGTTCG----A-C-TC--T-GATCCTACCGATCTCTCCTCATCCGTGAAACGAGATAT 221
|||||||| | | || | ||| || ||||||| |||| |||||||||||||||||
Sbjct 250 GAGGTTCGAATCATCTTCTATGGATTCTCCCGATCTAGCCTCCTCCGTGAAACGAGATAT 309
Query 222 TACTGAGGTTCAATCTCTTTGTTCCAATATGGACGGTCTCTGGCGTTCGATCCCTGTGAA 281
||||||||| | |||||| || || || ||||| ||||||||| || || ||||| ||
Sbjct 310 TACTGAGGTCCGATCTCTCTGCTCTAACATGGATACTCTCTGGCGCTCAATTCCTGTTAA 369
Query 282 ATCCCAGCGTGATCTTTGGAGAAGAAAGAGTGAACAAGTAGGAGAAGAGGCCGAGTATTT 341
||| ||||| ||||| ||||||||||||| ||||||||| |||||||| || ||||||||
Sbjct 370 ATCTCAGCGCGATCTCTGGAGAAGAAAGACTGAACAAGTTGGAGAAGAAGCTGAGTATTT 429
Query 342 GAACCAAAGTCTGGAGAAATACATGTGGAGGAATCAGAGGAAGATGTTGGAAGCGAAAGA 401
||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 430 GAATCTAAGTCTGGAGAAATACATGTCGAGGAATCAGAGGAAGATGTTGGAAGCTAAAGA 489
Query 402 GAGAGCGGATTTGTTAGGTAGAGGGAGCGGAGAAGGAGCTCATATTTTGCAAATATTTGA 461
||||||||||||| ||||||||| ||| |||||||||||||| |||||||| ||||||||
Sbjct 490 GAGAGCGGATTTGCTAGGTAGAGCGAGTGGAGAAGGAGCTCACATTTTGCAGATATTTGA 549
Query 462 TGAGGAAGCTCAAGGAATGAACTCTGTCAAGAATTCGAAGAGAATGCTCGAAGATTCG-T 520
|||||||||||||| |||| |||||| ||||| || ||||||||||| ||||| ||| |
Sbjct 550 TGAGGAAGCTCAAGCTATGAGCTCTGTGAAGAACTCAAAGAGAATGCTTGAAGAGTCGTT 609
Query 521 TTCAAAGTGGAGTTGCTATCCTCTCCAAATATGCCGAACAAAAGGATCGTTTGAAGAGGG 580
||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 610 TTC-TAGTGGTGTTGCTATCCTCTCCAAATATGCTGAACAAAGGGATCGTTTGAAGAGTG 668
Query 581 CACAGCGGAAGGCTTTGGATGTTCTGAACACTGTTGGGCTCTCCAACTCTGTATTGAGGC 640
||||||| || |||||||||||||||||||| || ||||||||||| || ||| ||||||
Sbjct 669 CACAGCGTAAAGCTTTGGATGTTCTGAACACAGTAGGGCTCTCCAATTCGGTACTGAGGC 728
Query 641 TCATTGAGAGGCGCAATCGTGTTGATACATGGATTAAATACGCCGGTATGATCGCAACGC 700
|||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
Sbjct 729 TCATTGAGAGGCGCAATCGTGTTGATACTTGGATCAAATATGCCGGTATGATCGCAACAC 788
Query 701 TTGTCATATTGTATCTCTTCATAAGATGGACACGCTAA 738
|||||||||| ||||| |||||||||||||||||||||
Sbjct 789 TTGTCATATTATATCTGTTCATAAGATGGACACGCTAA 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744576157
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5