BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495113
Length=461
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50460.1 | Symbols: | secE/sec61-gamma protein transport pr... 712 0.0
AT4G24920.1 | Symbols: | secE/sec61-gamma protein transport pr... 287 7e-77
> AT5G50460.1 | Symbols: | secE/sec61-gamma protein transport
protein | chr5:20551437-20552566 REVERSE LENGTH=500
Length=500
Score = 712 bits (385), Expect = 0.0
Identities = 439/464 (95%), Gaps = 8/464 (2%)
Strand=Plus/Plus
Query 1 CAATTTTCAGATCATTCAAATCGAAGCTAAAG-ATCGCCGCCATGGACGCCATTGATTCC 59
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 16 CAATTTTCAGATCATTTGAATCGAAGCTAAAGAATCGCCGCCATGGACGCCATTGATTCC 75
Query 60 GTCGTTGACCCTCTCAGAGACTTCGCTAAGGATAGTATTCGCCTCGTTAAGCGTTGCCAC 119
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 76 GTCGTTGATCCTCTCAGAGACTTCGCTAAGGATAGTATTCGTCTCGTCAAGCGTTGCCAC 135
Query 120 AAGCCAGATCGCAAAGAATTCACGAAAGTTGCAGTTCGTACCGCGATTGGGTTTGTGGTA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 AAGCCAGATCGCAAAGAATTCACGAAAGTTGCAGTTCGTACCGCGATTGGGTTTGTGGTA 195
Query 180 ATGGGATTCGTTGGGTTCTTTGTGAAGCTAATCTTTATTCCGATCAACAACATCATCGTC 239
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 196 ATGGGATTCGTTGGCTTCTTTGTGAAGCTAATCTTCATTCCGATCAACAACATCATCGTC 255
Query 240 GGTGCCACTTAGAAAGCAAAGGATACACAAGTCAGTTCTATGTTTTGAGAAAGGAAGTTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 256 GGTGCCACTTAGAAAGCAAAGGATACACAAGTCAGTTCTATGTTTTGAGAAAGGAAGATT 315
Query 300 TAGAGGCCT-TCTTGTTTCCAAGAGAA-GGCACAAGTCAGTTCTGTGTTTTATGTTATCG 357
|||||| | || ||||| ||| ||| ||||||||||||||||||||||| ||| ||||
Sbjct 316 TAGAGGT-TATCGTGTTTT-AAGTGAAAGGCACAAGTCAGTTCTGTGTTTTGTGTAATCG 373
Query 358 GATTCCATTTGTTTCAATGtttttttttGGTTCTTCTTTTTTGTTCACAGCTGAAAAATC 417
||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 374 GATCCCATTTGTTTCAATGTTTTTTT--GGTTCTTCTTTTTTGTTCACAACTGAAAAATC 431
Query 418 GGACGTGTTTTGAATGTAGAGCAAACTAATTTAGAAAGCTGTGG 461
| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 432 G-ACGTGTTTTGAATGTAGAGCAAACTAATTTAAAAAGCTGTGG 474
> AT4G24920.1 | Symbols: | secE/sec61-gamma protein transport
protein | chr4:12819511-12820736 REVERSE LENGTH=510
Length=510
Score = 287 bits (155), Expect = 7e-77
Identities = 201/223 (90%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 41 CATGGACGCCATTGATTCCGTCGTTGACCCTCTCAGAGACTTCGCTAAGGATAGTATTCG 100
|||||||||||||||||||||||| || ||||| |||||||| || ||||| || |||||
Sbjct 71 CATGGACGCCATTGATTCCGTCGTGGATCCTCTTAGAGACTTTGCCAAGGACAGCATTCG 130
Query 101 CCTCGTTAAGCGTTGCCACAAGCCAGATCGCAAAGAATTCACGAAAGTTGCAGTTCGTAC 160
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 131 CCTCGTTAAGCGTTGTCATAAGCCAGATCGCAAAGAATTCACGAAAGTTGCAGTCCGTAC 190
Query 161 CGCGATTGGGTTTGTGGTAATGGGATTCGTTGGG-TTCTTTGTGAAGCTAATCTTTATTC 219
|| || ||||| || |||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct 191 AGCAATCGGGTTCGTAGTAATGGGATTCGT-GGGATTCTTTGTGAAGCTCATCTTTATTC 249
Query 220 CGATCAACAACATCATCGTCGGTGCCACTTAGA-AAGCAAAGG 261
| ||||||||||||||||||||||| ||||||| || ||||||
Sbjct 250 CAATCAACAACATCATCGTCGGTGCTACTTAGATAA-CAAAGG 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21967006313
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5