BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495114
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50480.1 | Symbols: NF-YC6 | nuclear factor Y, subunit C6 | ... 970 0.0
> AT5G50480.1 | Symbols: NF-YC6 | nuclear factor Y, subunit C6
| chr5:20557574-20558487 REVERSE LENGTH=914
Length=914
Score = 970 bits (525), Expect = 0.0
Identities = 642/698 (92%), Gaps = 9/698 (1%)
Strand=Plus/Plus
Query 1 TCCAAATCCCTAGAAGTTGTGAAAAAT-G--GAGAACAACAACAACAACGGCGACAACAT 57
||||||||||||||| |||| |||| | |||||||||||||||||||||||||||||
Sbjct 2 TCCAAATCCCTAGAAATTGT---AAATGGCTGAGAACAACAACAACAACGGCGACAACAT 58
Query 58 GAACGACGGCAACCACCAGCCACCACCGTCGTACTCACAGCTACCGCCGATGGCATCATC 117
|||| ||| ||||||||||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct 59 GAACAACGACAACCACCAGCAACCACCGTCGTACTCGCAGCTGCCGCCGATGGCATCATC 118
Query 118 CAACCCTCAGTTACGTAATTACTGGATCGAGCAAATGGAAACCGTCTCTGATTTCAAAAA 177
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 119 CAACCCTCAGTTACGTAATTACTGGATTGAGCAGATGGAAACCGTCTCGGATTTCAAAAA 178
Query 178 CCGTCAGCTTCCATTGACTCGAATAAAAAAGATAATGAAGGCTGATCCTGATGTCCACAT 237
|||||||||||||||| ||||||| || ||||| |||||||||||||| ||||| |||||
Sbjct 179 CCGTCAGCTTCCATTGGCTCGAATTAAGAAGATCATGAAGGCTGATCCAGATGTGCACAT 238
Query 238 GGTCTCCGCGGAGGCTCCGATCCTCTTCGCAAAGGCATGCGAAATGTTCATCGTTGATCT 297
||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 239 GGTCTCCGCAGAGGCTCCGATCATCTTCGCAAAGGCTTGCGAAATGTTCATCGTTGATCT 298
Query 298 AACCATGCGGTCATGGCTCAATGCCGAGGAGAACAAACGCCACACGCTTCAGAAATCGGA 357
|| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 299 CACGATGCGGTCGTGGCTCAAAGCCGAGGAGAACAAACGCCACACGCTTCAGAAATCGGA 358
Query 358 TATCTCTAATGCAGTGGCTAGCTCTTTCACTTATGATTTCCTTCTTGATGTTGTCCCCAA 417
|||||| || |||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 359 TATCTCCAACGCAGTGGCTAGCTCTTTCACCTACGATTTCCTTCTTGATGTTGTCCCTAA 418
Query 418 GGACGATG-GAATCGCCACGGCTGATCCTGGCTTTGTGGCTATGCCACATCCTGACGGTG 476
|||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGACGA-GTCTATCGCCACCGCTGATCCTGGCTTTGTGGCTATGCCACATCCTGACGGTG 477
Query 477 GAGGAGTACCTCAATATTATTATCCACCGGGAGTGGTGATGGGGACTCCGGTTGCTGGTA 536
|||||||||| |||||||||||||||||||||||||||||||| ||||| | | |||||
Sbjct 478 GAGGAGTACCGCAATATTATTATCCACCGGGAGTGGTGATGGGAACTCCTATGGTTGGTA 537
Query 537 GTGGAATGTACGCGCCACCGCAGGCGTGGCCGGCAGCGGCTGGTGACGGGGAGGATGAGG 596
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct 538 GTGGAATGTACGCGCCATCGCAGGCGTGGCCAGCAGCGGCTGGTGACGGGGAGGATGATG 597
Query 597 GTGCGGATAATGAAGGAAACGGCGGCGGAAATTGAAGTGTTGATTTAGGGTTTGTAACCG 656
|| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 598 CTGAGGATAATGGAGGAAACGGCGGCGGAAATTGAAGTGTAGATTTAGGGTTTGTAACCG 657
Query 657 ACAATGTGGGAA-TTTGAAATTTCGTGGAGTTTATTAG 693
| ||||||||| |||||||||| |||| |||||||||
Sbjct 658 CCTATGTGGGAAATTTGAAATTTGGTGGTGTTTATTAG 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35415073635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5