BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495120
Length=204
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50660.1 | Symbols: | Protein of unknown function (DUF 3339... 339 8e-93
AT5G50560.1 | Symbols: | Protein of unknown function (DUF 3339... 339 8e-93
> AT5G50660.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr5:20612575-20612778 FORWARD LENGTH=204
Length=204
Score = 339 bits (183), Expect = 8e-93
Identities = 193/198 (97%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 7 GAGTGGGTTGCGGTGGTGGTGGCGACGGTGTTGTTTGTGGTGCTGAGCCCTGGATTGTTG 66
|||||| || |||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 7 GAGTGGCTTCCGGTGGTGGTCGCGACGGTGTTGTTTGTGGTGCTGAGCCCGGGATTGTTG 66
Query 67 TTTCAGGTTCCGGGAAACAACAACTTTGTAGACTTCGGGAAGATGGAAACCAGCGGATAC 126
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 67 TTTCAGGTTCCGGGAAACAACAACTTTGTAGACTTCGGGAAGATGGAAACGAGCGGATAC 126
Query 127 TCAATCCTTCTCCACGCCTTCCTTTACTTTGGCCTTGTCACTGTCTTCACCGTCGTCATC 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TCAATCCTTCTCCACGCCTTCCTTTACTTTGGCCTTGTCACTGTCTTCACCGTCGTCATC 186
Query 187 CACTTTCCGGGCACTTAA 204
||||||||||||||||||
Sbjct 187 CACTTTCCGGGCACTTAA 204
> AT5G50560.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr5:20579121-20579588 FORWARD LENGTH=468
Length=468
Score = 339 bits (183), Expect = 8e-93
Identities = 193/198 (97%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 7 GAGTGGGTTGCGGTGGTGGTGGCGACGGTGTTGTTTGTGGTGCTGAGCCCTGGATTGTTG 66
|||||| || |||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 119 GAGTGGCTTCCGGTGGTGGTCGCGACGGTGTTGTTTGTGGTGCTGAGCCCGGGATTGTTG 178
Query 67 TTTCAGGTTCCGGGAAACAACAACTTTGTAGACTTCGGGAAGATGGAAACCAGCGGATAC 126
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 179 TTTCAGGTTCCGGGAAACAACAACTTTGTAGACTTCGGGAAGATGGAAACGAGCGGATAC 238
Query 127 TCAATCCTTCTCCACGCCTTCCTTTACTTTGGCCTTGTCACTGTCTTCACCGTCGTCATC 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCAATCCTTCTCCACGCCTTCCTTTACTTTGGCCTTGTCACTGTCTTCACCGTCGTCATC 298
Query 187 CACTTTCCGGGCACTTAA 204
||||||||||||||||||
Sbjct 299 CACTTTCCGGGCACTTAA 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9104544531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5