BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495130 Length=1218 Score E Sequences producing significant alignments: (Bits) Value AT5G50700.1 | Symbols: HSD1 | hydroxysteroid dehydrogenase 1 | ... 1760 0.0 AT5G50600.1 | Symbols: ATHSD1, HSD1 | hydroxysteroid dehydrogen... 1760 0.0 > AT5G50700.1 | Symbols: HSD1 | hydroxysteroid dehydrogenase 1 | chr5:20623024-20625034 REVERSE LENGTH=1324 Length=1324 Score = 1760 bits (953), Expect = 0.0 Identities = 1070/1127 (95%), Gaps = 6/1127 (1%) Strand=Plus/Plus Query 1 ATGAGAGCCAAATCATTTATGTTTTGATCGACAACAATGGAATTGATAAACGA-TTTCCT 59 |||||||| |||||||||| |||||||||||||| |||||| ||||||||||| ||| || Sbjct 4 ATGAGAGCTAAATCATTTACGTTTTGATCGACAAAAATGGAGTTGATAAACGACTTT-CT 62 Query 60 CAACCTAACTGCGcctttcttcaccttctttggcctctgctttttcttgcctccttttta 119 |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 63 CAACCTAACTGCTCCTTTCTTCACCTTCTTTGGTCTCTGCTTCTTCTTGCCTCCTTTTTA 122 Query 120 tttcttcaagttcttGCAGTCTATTTTCTCGACCATTTTCT-TGGAAAATCTTTATGGGA 178 |||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||| Sbjct 123 CTTCTTCAAGTTCTTGCAGTCTATTTTCTCGACAATTTTCTCT-GAAAATCTTTACGGGA 181 Query 179 AAGTGGTTCTCATCACTGGCGCGTCCTCCGGTATCGGCGAGCAATTGGCATATGAGTACG 238 |||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||||| Sbjct 182 AAGTTGTTCTCATCACTGGTGCTTCCTCCGGTATAGGCGAGCAATTGGCATATGAGTACG 241 Query 239 CATGTAGAGGTGCATGCTTGGCCCTGACCGCTCGAAGGAAGAACCGTCTAGAGGAAGTGG 298 |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct 242 CATGTAGAGGTGCATGTTTAGCCCTGACCGCCCGAAGGAAGAACCGTCTAGAGGAAGTGG 301 Query 299 CAGAGATTGCTCGTGAACTCGGATCTCCCAATGTTGTCACCGTTCATGCTGATGTCTCCA 358 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 302 CAGAGATTGCTCGTGAACTCGGATCTCCCAATGTTGTTACCGTTCATGCTGATGTCTCCA 361 Query 359 AACCTGATGACTGTAGACGAATCGTTGATGACACCATCACCCATTTTGGCAGATTGGATC 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 AACCTGATGACTGTAGACGAATCGTTGATGACACCATCACCCATTTTGGCAGATTGGATC 421 Query 419 ATCTTGTAAATAATGCTGGGATGACGCAGATTTCAATGTTTGAGAACATTGAAGATATAA 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 ATCTTGTAAATAATGCTGGGATGACGCAGATTTCAATGTTTGAGAACATTGAAGATATAA 481 Query 479 CAAGGACAAAAGCAGTTTTGGATACTAACTTCTGGGGATCGGTTTACACAACTCGTGCTG 538 | |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 482 CGAGGACAAAAGCAGTTTTGGATACTAACTTCTGGGGATCGGTTTATACCACTCGTGCTG 541 Query 539 CGCTTCCTTACCTTAGACAAAGCAATGGTAAGATTGTGGCTATGTCGTCCTCTGCAGCGT 598 ||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||| Sbjct 542 CGCTTCCATACCTTAGACAAAGTAATGGTAAGATTGTGGCTATGTCGTCTTCCGCAGCGT 601 Query 599 GGCTAACCGCTCCAAGGATGAGCTTTTACAATGCAAGCAAAGCAGCTTTGTTGAGCTTCT 658 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 602 GGCTAACCGCTCCAAGGATGAGTTTTTACAATGCAAGCAAAGCAGCTTTGTTGAGCTTCT 661 Query 659 TTGAGACGATGAGAATTGAGCTTGGTGGCGATGTACACATTACAATTGTCACACCTGGTT 718 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 662 TTGAGACGATGAGAATTGAGCTTGGTGGCGATGTACACATTACAATCGTCACACCTGGTT 721 Query 719 ATATAGAATCCGAACTCACACAAGGCAAGTACTTCTCTGGTGAAGGCGAGTTAATAGTCA 778 |||| || || || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 ATATCGAGTCGGAGCTCACACAAGGCAAGTACTTCTCTGGTGAAGGCGAGTTAATAGTCA 781 Query 779 ACCAAGACATGAGAGATGTTCAAATAGGACCATTTCCGGTAGCATCAGCATCAGGATGTG 838 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 782 ACCAAGACATGAGAGATGTTCAAGTAGGACCATTTCCGGTAGCGTCAGCATCAGGATGTG 841 Query 839 CCAAGGCGATAGTGAACGGTGTGTGCCGGAAACAAAGATACGTGACAGTA-CCATCGTGG 897 ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| ||| Sbjct 842 CCAAGTCGATAGTGAACGGTGTGTGCCGGAAACAAAGATACGTGACAG-AGCCATCATGG 900 Query 898 TTTAAGGTGACATACCTTTGGAAAGTGCTATGTCCTGAGTTGATTGAGTGGGGTTGTCGG 957 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 901 TTTAAGGTGACGTACCTTTGGAAAGTGCTATGTCCGGAGTTGATTGAGTGGGGTTGTCGG 960 Query 958 TTACTGTACATGACTGGAACTGGTATGTCCGAGGAAAGTGCACTCAACAAGAGGATCATG 1017 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 961 TTACTGTACATGACTGGAACTGGTATGTCCGAGGATACTGCACTCAACAAGAGGATCATG 1020 Query 1018 GACATTCCTGGTGTACGTAGTGCTCTATACCCGGAATCTATCCGAAGGCCAGAAATCAAG 1077 ||||||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||| Sbjct 1021 GACATTCCTGGTGTACGTAGTACTCTGTACCCGGAATCTATCAGAACTCCAGAAATCAAG 1080 Query 1078 TCGGATTAGAGAGATGTTGATGCATAATAAATAGATGAGGTGTATCA 1124 ||||||||||||| || || |||||||||| |||||| ||||||| Sbjct 1081 TCGGATTAGAGAGGGGTCAATACATAATAAATGGATGAGATGTATCA 1127 > AT5G50600.1 | Symbols: ATHSD1, HSD1 | hydroxysteroid dehydrogenase 1 | chr5:20589702-20591689 REVERSE LENGTH=1301 Length=1301 Score = 1760 bits (953), Expect = 0.0 Identities = 1070/1127 (95%), Gaps = 6/1127 (1%) Strand=Plus/Plus Query 1 ATGAGAGCCAAATCATTTATGTTTTGATCGACAACAATGGAATTGATAAACGA-TTTCCT 59 |||||||| |||||||||| |||||||||||||| |||||| ||||||||||| ||| || Sbjct 1 ATGAGAGCTAAATCATTTACGTTTTGATCGACAAAAATGGAGTTGATAAACGACTTT-CT 59 Query 60 CAACCTAACTGCGcctttcttcaccttctttggcctctgctttttcttgcctccttttta 119 |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 60 CAACCTAACTGCTCCTTTCTTCACCTTCTTTGGTCTCTGCTTCTTCTTGCCTCCTTTTTA 119 Query 120 tttcttcaagttcttGCAGTCTATTTTCTCGACCATTTTCT-TGGAAAATCTTTATGGGA 178 |||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||| Sbjct 120 CTTCTTCAAGTTCTTGCAGTCTATTTTCTCGACAATTTTCTCT-GAAAATCTTTACGGGA 178 Query 179 AAGTGGTTCTCATCACTGGCGCGTCCTCCGGTATCGGCGAGCAATTGGCATATGAGTACG 238 |||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||||| Sbjct 179 AAGTTGTTCTCATCACTGGTGCTTCCTCCGGTATAGGCGAGCAATTGGCATATGAGTACG 238 Query 239 CATGTAGAGGTGCATGCTTGGCCCTGACCGCTCGAAGGAAGAACCGTCTAGAGGAAGTGG 298 |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct 239 CATGTAGAGGTGCATGTTTAGCCCTGACCGCCCGAAGGAAGAACCGTCTAGAGGAAGTGG 298 Query 299 CAGAGATTGCTCGTGAACTCGGATCTCCCAATGTTGTCACCGTTCATGCTGATGTCTCCA 358 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 299 CAGAGATTGCTCGTGAACTCGGATCTCCCAATGTTGTTACCGTTCATGCTGATGTCTCCA 358 Query 359 AACCTGATGACTGTAGACGAATCGTTGATGACACCATCACCCATTTTGGCAGATTGGATC 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 AACCTGATGACTGTAGACGAATCGTTGATGACACCATCACCCATTTTGGCAGATTGGATC 418 Query 419 ATCTTGTAAATAATGCTGGGATGACGCAGATTTCAATGTTTGAGAACATTGAAGATATAA 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 ATCTTGTAAATAATGCTGGGATGACGCAGATTTCAATGTTTGAGAACATTGAAGATATAA 478 Query 479 CAAGGACAAAAGCAGTTTTGGATACTAACTTCTGGGGATCGGTTTACACAACTCGTGCTG 538 | |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 479 CGAGGACAAAAGCAGTTTTGGATACTAACTTCTGGGGATCGGTTTATACCACTCGTGCTG 538 Query 539 CGCTTCCTTACCTTAGACAAAGCAATGGTAAGATTGTGGCTATGTCGTCCTCTGCAGCGT 598 ||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||| Sbjct 539 CGCTTCCATACCTTAGACAAAGTAATGGTAAGATTGTGGCTATGTCGTCTTCCGCAGCGT 598 Query 599 GGCTAACCGCTCCAAGGATGAGCTTTTACAATGCAAGCAAAGCAGCTTTGTTGAGCTTCT 658 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 599 GGCTAACCGCTCCAAGGATGAGTTTTTACAATGCAAGCAAAGCAGCTTTGTTGAGCTTCT 658 Query 659 TTGAGACGATGAGAATTGAGCTTGGTGGCGATGTACACATTACAATTGTCACACCTGGTT 718 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 659 TTGAGACGATGAGAATTGAGCTTGGTGGCGATGTACACATTACAATCGTCACACCTGGTT 718 Query 719 ATATAGAATCCGAACTCACACAAGGCAAGTACTTCTCTGGTGAAGGCGAGTTAATAGTCA 778 |||| || || || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 ATATCGAGTCGGAGCTCACACAAGGCAAGTACTTCTCTGGTGAAGGCGAGTTAATAGTCA 778 Query 779 ACCAAGACATGAGAGATGTTCAAATAGGACCATTTCCGGTAGCATCAGCATCAGGATGTG 838 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 779 ACCAAGACATGAGAGATGTTCAAGTAGGACCATTTCCGGTAGCGTCAGCATCAGGATGTG 838 Query 839 CCAAGGCGATAGTGAACGGTGTGTGCCGGAAACAAAGATACGTGACAGTA-CCATCGTGG 897 ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| ||| Sbjct 839 CCAAGTCGATAGTGAACGGTGTGTGCCGGAAACAAAGATACGTGACAG-AGCCATCATGG 897 Query 898 TTTAAGGTGACATACCTTTGGAAAGTGCTATGTCCTGAGTTGATTGAGTGGGGTTGTCGG 957 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 898 TTTAAGGTGACGTACCTTTGGAAAGTGCTATGTCCGGAGTTGATTGAGTGGGGTTGTCGG 957 Query 958 TTACTGTACATGACTGGAACTGGTATGTCCGAGGAAAGTGCACTCAACAAGAGGATCATG 1017 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 958 TTACTGTACATGACTGGAACTGGTATGTCCGAGGATACTGCACTCAACAAGAGGATCATG 1017 Query 1018 GACATTCCTGGTGTACGTAGTGCTCTATACCCGGAATCTATCCGAAGGCCAGAAATCAAG 1077 ||||||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||| Sbjct 1018 GACATTCCTGGTGTACGTAGTACTCTGTACCCGGAATCTATCAGAACTCCAGAAATCAAG 1077 Query 1078 TCGGATTAGAGAGATGTTGATGCATAATAAATAGATGAGGTGTATCA 1124 ||||||||||||| || || |||||||||| |||||| ||||||| Sbjct 1078 TCGGATTAGAGAGGGGTCAATACATAATAAATGGATGAGATGTATCA 1124 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59839049640 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5