BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495130
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50700.1 | Symbols: HSD1 | hydroxysteroid dehydrogenase 1 | ... 1760 0.0
AT5G50600.1 | Symbols: ATHSD1, HSD1 | hydroxysteroid dehydrogen... 1760 0.0
> AT5G50700.1 | Symbols: HSD1 | hydroxysteroid dehydrogenase 1
| chr5:20623024-20625034 REVERSE LENGTH=1324
Length=1324
Score = 1760 bits (953), Expect = 0.0
Identities = 1070/1127 (95%), Gaps = 6/1127 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGCCAAATCATTTATGTTTTGATCGACAACAATGGAATTGATAAACGA-TTTCCT 59
|||||||| |||||||||| |||||||||||||| |||||| ||||||||||| ||| ||
Sbjct 4 ATGAGAGCTAAATCATTTACGTTTTGATCGACAAAAATGGAGTTGATAAACGACTTT-CT 62
Query 60 CAACCTAACTGCGcctttcttcaccttctttggcctctgctttttcttgcctccttttta 119
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 63 CAACCTAACTGCTCCTTTCTTCACCTTCTTTGGTCTCTGCTTCTTCTTGCCTCCTTTTTA 122
Query 120 tttcttcaagttcttGCAGTCTATTTTCTCGACCATTTTCT-TGGAAAATCTTTATGGGA 178
|||||||||||||||||||||||||||||||| ||||||| | ||||||||||| ||||
Sbjct 123 CTTCTTCAAGTTCTTGCAGTCTATTTTCTCGACAATTTTCTCT-GAAAATCTTTACGGGA 181
Query 179 AAGTGGTTCTCATCACTGGCGCGTCCTCCGGTATCGGCGAGCAATTGGCATATGAGTACG 238
|||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 182 AAGTTGTTCTCATCACTGGTGCTTCCTCCGGTATAGGCGAGCAATTGGCATATGAGTACG 241
Query 239 CATGTAGAGGTGCATGCTTGGCCCTGACCGCTCGAAGGAAGAACCGTCTAGAGGAAGTGG 298
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 242 CATGTAGAGGTGCATGTTTAGCCCTGACCGCCCGAAGGAAGAACCGTCTAGAGGAAGTGG 301
Query 299 CAGAGATTGCTCGTGAACTCGGATCTCCCAATGTTGTCACCGTTCATGCTGATGTCTCCA 358
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 302 CAGAGATTGCTCGTGAACTCGGATCTCCCAATGTTGTTACCGTTCATGCTGATGTCTCCA 361
Query 359 AACCTGATGACTGTAGACGAATCGTTGATGACACCATCACCCATTTTGGCAGATTGGATC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 AACCTGATGACTGTAGACGAATCGTTGATGACACCATCACCCATTTTGGCAGATTGGATC 421
Query 419 ATCTTGTAAATAATGCTGGGATGACGCAGATTTCAATGTTTGAGAACATTGAAGATATAA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ATCTTGTAAATAATGCTGGGATGACGCAGATTTCAATGTTTGAGAACATTGAAGATATAA 481
Query 479 CAAGGACAAAAGCAGTTTTGGATACTAACTTCTGGGGATCGGTTTACACAACTCGTGCTG 538
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 482 CGAGGACAAAAGCAGTTTTGGATACTAACTTCTGGGGATCGGTTTATACCACTCGTGCTG 541
Query 539 CGCTTCCTTACCTTAGACAAAGCAATGGTAAGATTGTGGCTATGTCGTCCTCTGCAGCGT 598
||||||| |||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 542 CGCTTCCATACCTTAGACAAAGTAATGGTAAGATTGTGGCTATGTCGTCTTCCGCAGCGT 601
Query 599 GGCTAACCGCTCCAAGGATGAGCTTTTACAATGCAAGCAAAGCAGCTTTGTTGAGCTTCT 658
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 602 GGCTAACCGCTCCAAGGATGAGTTTTTACAATGCAAGCAAAGCAGCTTTGTTGAGCTTCT 661
Query 659 TTGAGACGATGAGAATTGAGCTTGGTGGCGATGTACACATTACAATTGTCACACCTGGTT 718
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 662 TTGAGACGATGAGAATTGAGCTTGGTGGCGATGTACACATTACAATCGTCACACCTGGTT 721
Query 719 ATATAGAATCCGAACTCACACAAGGCAAGTACTTCTCTGGTGAAGGCGAGTTAATAGTCA 778
|||| || || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ATATCGAGTCGGAGCTCACACAAGGCAAGTACTTCTCTGGTGAAGGCGAGTTAATAGTCA 781
Query 779 ACCAAGACATGAGAGATGTTCAAATAGGACCATTTCCGGTAGCATCAGCATCAGGATGTG 838
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 782 ACCAAGACATGAGAGATGTTCAAGTAGGACCATTTCCGGTAGCGTCAGCATCAGGATGTG 841
Query 839 CCAAGGCGATAGTGAACGGTGTGTGCCGGAAACAAAGATACGTGACAGTA-CCATCGTGG 897
||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 842 CCAAGTCGATAGTGAACGGTGTGTGCCGGAAACAAAGATACGTGACAG-AGCCATCATGG 900
Query 898 TTTAAGGTGACATACCTTTGGAAAGTGCTATGTCCTGAGTTGATTGAGTGGGGTTGTCGG 957
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 TTTAAGGTGACGTACCTTTGGAAAGTGCTATGTCCGGAGTTGATTGAGTGGGGTTGTCGG 960
Query 958 TTACTGTACATGACTGGAACTGGTATGTCCGAGGAAAGTGCACTCAACAAGAGGATCATG 1017
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 961 TTACTGTACATGACTGGAACTGGTATGTCCGAGGATACTGCACTCAACAAGAGGATCATG 1020
Query 1018 GACATTCCTGGTGTACGTAGTGCTCTATACCCGGAATCTATCCGAAGGCCAGAAATCAAG 1077
||||||||||||||||||||| |||| ||||||||||||||| ||| ||||||||||||
Sbjct 1021 GACATTCCTGGTGTACGTAGTACTCTGTACCCGGAATCTATCAGAACTCCAGAAATCAAG 1080
Query 1078 TCGGATTAGAGAGATGTTGATGCATAATAAATAGATGAGGTGTATCA 1124
||||||||||||| || || |||||||||| |||||| |||||||
Sbjct 1081 TCGGATTAGAGAGGGGTCAATACATAATAAATGGATGAGATGTATCA 1127
> AT5G50600.1 | Symbols: ATHSD1, HSD1 | hydroxysteroid dehydrogenase
1 | chr5:20589702-20591689 REVERSE LENGTH=1301
Length=1301
Score = 1760 bits (953), Expect = 0.0
Identities = 1070/1127 (95%), Gaps = 6/1127 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGCCAAATCATTTATGTTTTGATCGACAACAATGGAATTGATAAACGA-TTTCCT 59
|||||||| |||||||||| |||||||||||||| |||||| ||||||||||| ||| ||
Sbjct 1 ATGAGAGCTAAATCATTTACGTTTTGATCGACAAAAATGGAGTTGATAAACGACTTT-CT 59
Query 60 CAACCTAACTGCGcctttcttcaccttctttggcctctgctttttcttgcctccttttta 119
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 60 CAACCTAACTGCTCCTTTCTTCACCTTCTTTGGTCTCTGCTTCTTCTTGCCTCCTTTTTA 119
Query 120 tttcttcaagttcttGCAGTCTATTTTCTCGACCATTTTCT-TGGAAAATCTTTATGGGA 178
|||||||||||||||||||||||||||||||| ||||||| | ||||||||||| ||||
Sbjct 120 CTTCTTCAAGTTCTTGCAGTCTATTTTCTCGACAATTTTCTCT-GAAAATCTTTACGGGA 178
Query 179 AAGTGGTTCTCATCACTGGCGCGTCCTCCGGTATCGGCGAGCAATTGGCATATGAGTACG 238
|||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 179 AAGTTGTTCTCATCACTGGTGCTTCCTCCGGTATAGGCGAGCAATTGGCATATGAGTACG 238
Query 239 CATGTAGAGGTGCATGCTTGGCCCTGACCGCTCGAAGGAAGAACCGTCTAGAGGAAGTGG 298
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 239 CATGTAGAGGTGCATGTTTAGCCCTGACCGCCCGAAGGAAGAACCGTCTAGAGGAAGTGG 298
Query 299 CAGAGATTGCTCGTGAACTCGGATCTCCCAATGTTGTCACCGTTCATGCTGATGTCTCCA 358
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 CAGAGATTGCTCGTGAACTCGGATCTCCCAATGTTGTTACCGTTCATGCTGATGTCTCCA 358
Query 359 AACCTGATGACTGTAGACGAATCGTTGATGACACCATCACCCATTTTGGCAGATTGGATC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AACCTGATGACTGTAGACGAATCGTTGATGACACCATCACCCATTTTGGCAGATTGGATC 418
Query 419 ATCTTGTAAATAATGCTGGGATGACGCAGATTTCAATGTTTGAGAACATTGAAGATATAA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATCTTGTAAATAATGCTGGGATGACGCAGATTTCAATGTTTGAGAACATTGAAGATATAA 478
Query 479 CAAGGACAAAAGCAGTTTTGGATACTAACTTCTGGGGATCGGTTTACACAACTCGTGCTG 538
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 479 CGAGGACAAAAGCAGTTTTGGATACTAACTTCTGGGGATCGGTTTATACCACTCGTGCTG 538
Query 539 CGCTTCCTTACCTTAGACAAAGCAATGGTAAGATTGTGGCTATGTCGTCCTCTGCAGCGT 598
||||||| |||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 539 CGCTTCCATACCTTAGACAAAGTAATGGTAAGATTGTGGCTATGTCGTCTTCCGCAGCGT 598
Query 599 GGCTAACCGCTCCAAGGATGAGCTTTTACAATGCAAGCAAAGCAGCTTTGTTGAGCTTCT 658
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 599 GGCTAACCGCTCCAAGGATGAGTTTTTACAATGCAAGCAAAGCAGCTTTGTTGAGCTTCT 658
Query 659 TTGAGACGATGAGAATTGAGCTTGGTGGCGATGTACACATTACAATTGTCACACCTGGTT 718
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 TTGAGACGATGAGAATTGAGCTTGGTGGCGATGTACACATTACAATCGTCACACCTGGTT 718
Query 719 ATATAGAATCCGAACTCACACAAGGCAAGTACTTCTCTGGTGAAGGCGAGTTAATAGTCA 778
|||| || || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATATCGAGTCGGAGCTCACACAAGGCAAGTACTTCTCTGGTGAAGGCGAGTTAATAGTCA 778
Query 779 ACCAAGACATGAGAGATGTTCAAATAGGACCATTTCCGGTAGCATCAGCATCAGGATGTG 838
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 779 ACCAAGACATGAGAGATGTTCAAGTAGGACCATTTCCGGTAGCGTCAGCATCAGGATGTG 838
Query 839 CCAAGGCGATAGTGAACGGTGTGTGCCGGAAACAAAGATACGTGACAGTA-CCATCGTGG 897
||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 839 CCAAGTCGATAGTGAACGGTGTGTGCCGGAAACAAAGATACGTGACAG-AGCCATCATGG 897
Query 898 TTTAAGGTGACATACCTTTGGAAAGTGCTATGTCCTGAGTTGATTGAGTGGGGTTGTCGG 957
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 898 TTTAAGGTGACGTACCTTTGGAAAGTGCTATGTCCGGAGTTGATTGAGTGGGGTTGTCGG 957
Query 958 TTACTGTACATGACTGGAACTGGTATGTCCGAGGAAAGTGCACTCAACAAGAGGATCATG 1017
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 958 TTACTGTACATGACTGGAACTGGTATGTCCGAGGATACTGCACTCAACAAGAGGATCATG 1017
Query 1018 GACATTCCTGGTGTACGTAGTGCTCTATACCCGGAATCTATCCGAAGGCCAGAAATCAAG 1077
||||||||||||||||||||| |||| ||||||||||||||| ||| ||||||||||||
Sbjct 1018 GACATTCCTGGTGTACGTAGTACTCTGTACCCGGAATCTATCAGAACTCCAGAAATCAAG 1077
Query 1078 TCGGATTAGAGAGATGTTGATGCATAATAAATAGATGAGGTGTATCA 1124
||||||||||||| || || |||||||||| |||||| |||||||
Sbjct 1078 TCGGATTAGAGAGGGGTCAATACATAATAAATGGATGAGATGTATCA 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5