BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495133
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50710.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 787 0.0
AT5G50610.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 787 0.0
> AT5G50710.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G50610.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:20627044-20627601 FORWARD LENGTH=558
Length=558
Score = 787 bits (426), Expect = 0.0
Identities = 517/561 (92%), Gaps = 6/561 (1%)
Strand=Plus/Plus
Query 1 ATGGATCCCGTAACCGCCATGCAAGAGACCCAATA-TAACAACGGACCAAGAACCTACAA 59
||||||||||||| ||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 1 ATGGATCCCGTAATCGCCATGCAAGAGGCCCAA-AGTAACAACGGACCAAGAACCTACAA 59
Query 60 GAAACCAGTTCTTAATTTCCTCGACCGCCTTTCCTTGTCATTTATCGTAGTTGTTTTCTG 119
||| ||| |||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 60 GAAGCCATTTCTTAATTTTCTTGACCGCCTCTCCTTGTCATTTATCGTAGTTGTTTTCTG 119
Query 120 CGTTATTGTAGTTTTTTGCCCGCTTTGGCTTCAATTTTCTAATAGTTTTTTCTTATTCAC 179
|||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 120 CGTTATTGTAGTTTTTAGTCCAATTTGGCTTCAATTTTCTAATAGTTTTTTCTTATTCAC 179
Query 180 CATCCCTAGAGTTGTTAATTACATCTTAAAACCTAAGGTTTTATTCGTTCTCACAAATGT 239
||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 180 CATCCCTAGAGTTATTAATTACATCTTAAACCCTAAGGTTTTATTCATTCTCACAAATGT 239
Query 240 CATCGTGATCACCCTCATCGGAGAATCAAGGTTTTCTAGAGCAAGATCTTCTCTTCCAGA 299
|||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 240 TATCGTGATCATCCTCATCGGAGAATCAAGGATTTCTAGACCAAGATCTTCTCTTCCAGC 299
Query 300 TAGCG-AGTTACCAAGAAGTCGTTCTTCTTCTTTGTGGTCTCATGAAAATGTGAGGGTGG 358
||||| | |||| ||||| | ||||| | |||||||||| ||||||||||||||||||
Sbjct 300 TAGCGCA-TTACTGAGAAGCCATTCTTATGGTTTGTGGTCTAATGAAAATGTGAGGGTGG 358
Query 359 AAATAGGATATCAACGATTTTCGGAAGAGAATATTGATCAACCGAGGCT-GAGAGAGGGC 417
|||| |||||||||||||||| ||||||||||||||||| ||||||||| | |||| |||
Sbjct 359 AAATGGGATATCAACGATTTTTGGAAGAGAATATTGATCGACCGAGGCTCG-GAGAAGGC 417
Query 418 AAGAGATGTAAGCTTAGTCCGTTGGAGATGGATTCATTAAACCAGAGGGCTGATGATCTG 477
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AAGATATGTAAGCTTAGTCCGTTGGAGATGGATTCATTAAACCAGAGGGCTGATGATCTG 477
Query 478 ATAGCTCGTGTGAACAGACAGAGGAGGCTTGAAATTGGGCTGGTACATAGCCACATAGAC 537
|| ||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 478 ATCGCTCGTGTGAACAGACAGAGGAGGCTTGAAATTGGGCTGTTACATAGACGCATAGAC 537
Query 538 GAAGGCCGTATATCATTATAG 558
||||||| ||||||||||||
Sbjct 538 GAAGGCCACATATCATTATAG 558
> AT5G50610.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G50710.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:20593702-20594259 FORWARD LENGTH=558
Length=558
Score = 787 bits (426), Expect = 0.0
Identities = 517/561 (92%), Gaps = 6/561 (1%)
Strand=Plus/Plus
Query 1 ATGGATCCCGTAACCGCCATGCAAGAGACCCAATA-TAACAACGGACCAAGAACCTACAA 59
||||||||||||| ||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 1 ATGGATCCCGTAATCGCCATGCAAGAGGCCCAA-AGTAACAACGGACCAAGAACCTACAA 59
Query 60 GAAACCAGTTCTTAATTTCCTCGACCGCCTTTCCTTGTCATTTATCGTAGTTGTTTTCTG 119
||| ||| |||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 60 GAAGCCATTTCTTAATTTTCTTGACCGCCTCTCCTTGTCATTTATCGTAGTTGTTTTCTG 119
Query 120 CGTTATTGTAGTTTTTTGCCCGCTTTGGCTTCAATTTTCTAATAGTTTTTTCTTATTCAC 179
|||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 120 CGTTATTGTAGTTTTTAGTCCAATTTGGCTTCAATTTTCTAATAGTTTTTTCTTATTCAC 179
Query 180 CATCCCTAGAGTTGTTAATTACATCTTAAAACCTAAGGTTTTATTCGTTCTCACAAATGT 239
||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 180 CATCCCTAGAGTTATTAATTACATCTTAAACCCTAAGGTTTTATTCATTCTCACAAATGT 239
Query 240 CATCGTGATCACCCTCATCGGAGAATCAAGGTTTTCTAGAGCAAGATCTTCTCTTCCAGA 299
|||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 240 TATCGTGATCATCCTCATCGGAGAATCAAGGATTTCTAGACCAAGATCTTCTCTTCCAGC 299
Query 300 TAGCG-AGTTACCAAGAAGTCGTTCTTCTTCTTTGTGGTCTCATGAAAATGTGAGGGTGG 358
||||| | |||| ||||| | ||||| | |||||||||| ||||||||||||||||||
Sbjct 300 TAGCGCA-TTACTGAGAAGCCATTCTTATGGTTTGTGGTCTAATGAAAATGTGAGGGTGG 358
Query 359 AAATAGGATATCAACGATTTTCGGAAGAGAATATTGATCAACCGAGGCT-GAGAGAGGGC 417
|||| |||||||||||||||| ||||||||||||||||| ||||||||| | |||| |||
Sbjct 359 AAATGGGATATCAACGATTTTTGGAAGAGAATATTGATCGACCGAGGCTCG-GAGAAGGC 417
Query 418 AAGAGATGTAAGCTTAGTCCGTTGGAGATGGATTCATTAAACCAGAGGGCTGATGATCTG 477
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AAGATATGTAAGCTTAGTCCGTTGGAGATGGATTCATTAAACCAGAGGGCTGATGATCTG 477
Query 478 ATAGCTCGTGTGAACAGACAGAGGAGGCTTGAAATTGGGCTGGTACATAGCCACATAGAC 537
|| ||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 478 ATCGCTCGTGTGAACAGACAGAGGAGGCTTGAAATTGGGCTGTTACATAGACGCATAGAC 537
Query 538 GAAGGCCGTATATCATTATAG 558
||||||| ||||||||||||
Sbjct 538 GAAGGCCACATATCATTATAG 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26774800351
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5