BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495134
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50720.1 | Symbols: ATHVA22E, HVA22E | HVA22 homologue E | c... 904 0.0
> AT5G50720.1 | Symbols: ATHVA22E, HVA22E | HVA22 homologue E |
chr5:20633193-20634552 REVERSE LENGTH=650
Length=650
Score = 904 bits (489), Expect = 0.0
Identities = 616/672 (92%), Gaps = 30/672 (4%)
Strand=Plus/Plus
Query 1 AACAAGAGCGTCCTTTGATTGGTTTTGGATTTTGTTGTGTTCCTCTCAAAATGACAAAAT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACAAGAGCGTCCTTTGATTGGTTTTGGATTTTGTTGTGTTCCTCTCAAAATGACAAAAC 60
Query 61 TATGGAC-TCTTCTCTCTGCTCTTCATTCCCTCGCTGGACCCGTGGTGATGCTGCTTTAC 119
||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TATGGACTTC-TCTCTCTGCTCTTCATTCCCTCGCTGGACCCGTGGTGATGCTGCTCTAT 119
Query 120 CCGTTATATGCGTCGGTGATAGCAATAGAGAGCCCATCAAAAGTAGATGACGAGCAATGG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCGTTATATGCGTCGGTGATAGCAATAGAGAGCCCATCAAAAGTAGATGACGAGCAATGG 179
Query 180 CTTGCTTATTGGATTCTCTACTCTTTCCTTACTCTATCAGAACTCATCCTTCAATCTCTC 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTTGCTTATTGGATTCTCTATTCTTTCCTTACTCTATCAGAACTCATCCTTCAATCTCTC 239
Query 240 CTAGAGTGGGTACCGATATGGTACACGGCTAAGCTAGTGTTTGTGGCATGGTTGGTTCTG 299
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 240 CTAGAGTGGATACCGATATGGTACACGGCGAAGCTAGTGTTTGTGGCATGGTTGGTTTTA 299
Query 300 CCGCAATTTAGAGGGGCTGCTTTCATATACAACAG-GATCGTGAGGGAACAGTTCAAGAA 358
|| ||||||||||| |||||||| |||||||||| | ||||||||||||||||||||||
Sbjct 300 CCACAATTTAGAGGAGCTGCTTTTATATACAACAAAG-TCGTGAGGGAACAGTTCAAGAA 358
Query 359 GTATGGCATCCTCAAACCTAAGGTAGAACATCAGGCTGAGTGAGTCAAAAAGAAG-ATGG 417
||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | | ||
Sbjct 359 GTACGGCATCCTCAAACCTAAGGTAGAGCATCAGGCTGAGTGAGTCAAAAAGA-GCAGGG 417
Query 418 GACAAAAGAGGGGTTCACTGTTGGGGCCTCCAGTTTCTAATCT-TTTATGCTTTTTCTCT 476
|||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||||| |
Sbjct 418 GACACAAGAGGGCTTCACTGTTGGGGTCTCCAGTTTCTAATCTCTTTATGCTTTTTCTAT 477
Query 477 TTTGTCTTAATTCTCTTTTGATATACGGAAAAATGGGTTTAGATGTTGACTATATGAGTT 536
||||||||| ||||||||||||||||||||||||||| || | | | || ||| |
Sbjct 478 TTTGTCTTATTTCTCTTTTGATATACGGAAAAATGGGGTT-G-T-T---CT-TAT---T- 526
Query 537 CTTATGAGCCTAGCTCCTGCTTGAATGTATATGAAAAGAACTTTTATTCGACGTTAAAAT 596
|||||||| || |||||||||||| ||||||| |||||||||||||||||| |
Sbjct 527 ---ATGAGCCT--CT---GCTTGAATGTAT--GAAAAGACCTTTTATTCGACGTTAAACT 576
Query 597 ATTATATTAAGAGATTATAAATTT-TAAATCTTGTGTTGCCACTTCTTAGTCTTTCAAGA 655
|||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 577 ATTATATTAA-AGATTAAAAAATTGTAAATCTTGTGTTGCCACTTCTTAGTCTTTCAAGA 635
Query 656 CATCATTGCCTT 667
|||||||||||
Sbjct 636 TATCATTGCCTT 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32250322374
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5