BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495139
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50760.1 | Symbols: | SAUR-like auxin-responsive protein fa... 1038 0.0
> AT5G50760.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:20644661-20645469 FORWARD LENGTH=809
Length=809
Score = 1038 bits (562), Expect = 0.0
Identities = 737/814 (91%), Gaps = 42/814 (5%)
Strand=Plus/Plus
Query 1 AAAAAACCAAACGGTCAACCAAAACTTGTCTGACCCACAAACACTTCTTGATTCTGTCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAAAAACCAAACGGTCAACCAAAACTTGTCTGACCCACAAACACTTCTTGATTCTGTCAT 61
Query 61 TGAGAAG--AA--tttt--ttttAATATACATCATCTTCTCA-T-----AG-G-AATAAT 106
||| ||| || |||| |||| |||||||||| ||||| | || | || |||
Sbjct 62 TGAAAAGAAAACTTTTTAATTTTTGGATACATCATCCTCTCATTGGAAGAGAGAAACAAT 121
Query 107 GAAGAATCCGATATTGAAGACATGGAGAAAAGTGAAGTCTTTTGGGCATACGAGCTCTTC 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 GAAGAATCCGATATTGAAGACATGGAGAAAAGTGAAGTCTTTTGGGCATACGAGCTCTTC 181
Query 167 GACTACACCCTCGTTCACGAGGAGCAAATCTTGCCATGGCTCTTTTCGTCTCGAAGATGC 226
||| |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||
Sbjct 182 GACCACACCCTCGTTCACGAAGAGCAAGTCTTGCCATGGCTCTTTTCGTCTCGAGGATGC 241
Query 227 TAAGAGCAATGAATCAAAAGCAAAGTCGAAGAAAGAGTTGCCGTCACATGGATTTTTCAC 286
||||||||| |||||||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct 242 TAAGAGCAACGAATCAAAAGGAAAGCCGAAGAAAGAGTCGCCGTCACATGGATTTTTCAC 301
Query 287 GGTTTACGTTGGTCCCACGAAACAGAGAATTGTCGTGAAGACGAAACTTCTGAACCATCC 346
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 302 GGTTTACGTTGGTCCCACGAAACAAAGAATTGTTGTGAAGACAAAACTTCTGAACCATCC 361
Query 347 TTTGTTCAAGAACTTGTTAGAAGATGCTGAGACCGAGTATGGATATAGACGCGATGGACC 406
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 362 TTTGTTCAAGAACTTGTTAGAAGATGCTGAGACTGAGTATGGATATAGACGCGATGGACC 421
Query 407 CATTGTTCTTCCTTGTGAGGTTGACTTCTTCTTCAAGGCTTTGGCGGATATGAAGTCTAA 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CATTGTTCTTCCTTGTGAGGTTGACTTCTTCTTCAAGGCTTTGGCGGATATGAAGTCTAA 481
Query 467 TCATGGTCATCatgatggtgatgattatgatgatgatgatgatgGTTTCACTAATTCTCC 526
|| ||||||||||||| ||||||| || |||||||||||||||||||||| ||||| ||
Sbjct 482 TCCTGGTCATCATGATCATGATGATGATTATGATGATGATGATGGTTTCACGAATTCCCC 541
Query 527 GGTTTGCGGATTCATCTGTAGTCCATATAGATCTTACGGTGGTGGTGGTA----T----- 577
| |||||||||| |||||||||| |||||||| ||||||||||||| || |
Sbjct 542 GATTTGCGGATTTGTCTGTAGTCCCTATAGATCATACGGTGGTGGTGTTACGGATCCTCT 601
Query 578 GGCCATGAAACGGAACGGCTCATACAAGCTTCTTCGATCTCCGTCTTTGTTCAAGTTGAA 637
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 602 GGCCATGAAACGGAACGGCTCATACAAGCTTCTTCGATCTCCATCTTTGTTCAAGTTGAC 661
Query 638 TAGAttttgaattt-tt-t-ctt-ctt-t-t-t-ATATATCTAAGTTCTTGTTCATAACA 689
|||||||||| ||| || | ||| ||| | | | ||||||||||||||||||||||||||
Sbjct 662 TAGATTTTGATTTTCTTCTTCTTTCTTCTATATTATATATCTAAGTTCTTGTTCATAACA 721
Query 690 TTACCATATACtttt-ttttt-tt--GGCATTATGAGTGGAAATGTGAAAGAAAA-CCCT 744
|||||||||| |||| ||||| || ||||| ||||||||||||||||||||| ||||
Sbjct 722 TTACCATATATTTTTCTTTTTGTTTTGGCAT---GAGTGGAAATGTGAAAGAAAAACCCT 778
Query 745 CTCACTTCTTCCTAAATTTGAAACAATTAGCTTG 778
|||||||| | ||||||||||||||||||||||
Sbjct 779 CTCACTTC--C-TAAATTTGAAACAATTAGCTTG 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37826312691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5