BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495141
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50790.1 | Symbols: SWEET10, AtSWEET10 | Nodulin MtN3 family... 1941 0.0
> AT5G50790.1 | Symbols: SWEET10, AtSWEET10 | Nodulin MtN3 family
protein | chr5:20656253-20658001 REVERSE LENGTH=1252
Length=1252
Score = 1941 bits (1051), Expect = 0.0
Identities = 1174/1232 (95%), Gaps = 13/1232 (1%)
Strand=Plus/Plus
Query 1 TTGTATCATACATTGAACA-GATTCTCAGTATGATCCTGTAGAGTTTACTCGTTCGTTCA 59
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1 TTGTATCATACATTGAACATAATTCTCAGTATGATCCTGTAGAGTTTACTCGTTCATTCA 60
Query 60 CTTGTATTCTCTTTCATAGAGGACGAGAGA-GG-GAGAGTTTCTAATTAATTAGAAGA-- 115
||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 61 CTTGTATTCTCTTTCATAGAGGAAGAGAGAGGGAGAGAGTTTCTAATTAATTAGAAGATT 120
Query 116 -TT-TTTCTTTATTTTCTAAACAAGTGTTACACTACTTTGAGAGATATATATATAAAAAT 173
|| |||||||||||||||||||||| ||| ||||||||||||| | ||||||||||
Sbjct 121 TTTCTTTCTTTATTTTCTAAACAAGTATTAGACTACTTTGAGAG----AGATATAAAAAT 176
Query 174 GGCAATTTCACAAGCCGTCTTGGCTACTGTCTTTGGCATCCTAGGGAATATCATCTCCTT 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GGCAATTTCACAAGCCGTCTTGGCTACTGTCTTTGGCATCCTAGGGAATATCATCTCCTT 236
Query 234 TTTCGTCTGCCTTGCCCCAATACCGACGTTCGTTCGTATATACAAGAGGAAATCATCTGA 293
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 TTTCGTCTGCCTTGCCCCAATACCGACGTTCGTTCGTATATACAAGAGGAAGTCATCTGA 296
Query 294 AGGGTATCAGTCGATCCCTTACGTGATTTCTCTGTTCAGCGCGATGCTATGGATGTACTA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGGGTATCAGTCGATCCCTTACGTGATTTCTCTGTTCAGCGCGATGCTATGGATGTACTA 356
Query 354 TGCAATGATCAAGAAAGATGCTATGATGTTGATCACCATAAACTCCTTTGCCTTTGTCAT 413
||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 357 CGCAATGATCAAGAAAGATGCTATGATGTTGATCACTATCAACTCCTTTGCCTTTGTCGT 416
Query 414 ACAAATCGTCTACATCTCCTTATACTTCTTCTACGCTCCTAAGAAGGAAAAGACTCTAAC 473
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 417 ACAAATCGTCTACATCTCCTTATTCTTCTTCTACGCTCCTAAGAAGGAAAAGACTCTAAC 476
Query 474 GGTGAAGTTCGTCCTCTTCGTGGACGTTCTCGGTTTCGGCGCAATCTTCGTGTTGACATA 533
|||||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||
Sbjct 477 GGTGAAGTTCGTCCTCTTTGTGGATGTTTTGGGTTTCGGCGCAATCTTCGTGTTGACATA 536
Query 534 CTTTCTGATTCATGCCAATAAACGTGTTCATGTTCTTGGATACATTTGTATGGTCTTTGC 593
|||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 537 CTTTATAATTCATGCCAATAAACGTGTTCAAGTTCTTGGATACATTTGTATGGTCTTTGC 596
Query 594 TCTATCTGTTTTTCTTGCTCCCCTTGGTATCATTAGGAAAGTGATCAAAACGAAGAGCGC 653
||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 597 TCTATCTGTTTTTGTTGCTCCCCTTGGCATAATTAGGAAAGTGATCAAAACGAAGAGCGC 656
Query 654 CGAGTTCATGCCATTCGGTCTCTCCTTCTTCCTCACCTTATCGGCTGTGATGTGGTTTTT 713
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 657 CGAGTTCATGCCATTCGGTCTCTCCTTCTTCCTCACCTTATCGGCTGTCATGTGGTTTTT 716
Query 714 CTACGGGCTTCTCCTTAAAGACATGAACATTGCTCTACCAAATGTTTTGGGTTTCATCTT 773
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 717 CTACGGACTTCTCCTTAAAGACATGAACATTGCCCTGCCAAATGTTTTGGGTTTCATCTT 776
Query 774 TGGAGTACTTCAGATGATTCTTTTCTTGATCTACAAGAAACCTGGGACTAAAGTCTTGGA 833
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 777 TGGAGTACTTCAGATGATTCTTTTCTTGATCTACAAGAAACCAGGGACTAAAGTCTTGGA 836
Query 834 ACCACCAGGGATTAAGCTTCAGGACATATCTGAGCATGTCGTCGATGTTGTGAGGCTAAG 893
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 837 GCCACCAGGGATTAAGCTTCAGGACATATCTGAGCATGTAGTCGATGTTGTGAGGCTAAG 896
Query 894 TACGATGGTTTGCAACTCACAGATGAGAACTTTGGTGCCACAAGACAGTGCCGATATGGA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TACGATGGTTTGCAACTCACAGATGAGAACTTTGGTGCCACAAGACAGTGCCGATATGGA 956
Query 954 AGCAACCATTGATATAGATGAGAAGATCAGAGGAGACATTGAGAAGATTAAGGATGACAA 1013
||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| ||
Sbjct 957 AGCAACCATTGATATAGATGAGAAGATCAAAGGAGATATTGAGAAGAATAAGGATGAAAA 1016
Query 1014 AGAAGCATTTCTTATTTCTAAGAATTAATTAGCTTTTAACTATCAACTGTCGAtgtgtgt 1073
||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1017 AGAAGTATTTCTCATTTCTAAGAATTAATTAGCTTTTAACTATCAAATGTCGATGTGTGT 1076
Query 1074 gggtgtgtgtCTAAGTTTGCTTGCATGTTAAGTTAGGGTTTAATCTTTA-ATTTGGGTTT 1132
|||||||||||| ||||||||||||||||||| ||||||||||| ||| |||||||| |
Sbjct 1077 GGGTGTGTGTCTCAGTTTGCTTGCATGTTAAGATAGGGTTTAATGTTTTTATTTGGGTCT 1136
Query 1133 GATCAGCGATCATCGTGCATCTCTCCCACCTATCTGTGATCTTTGTCTCTCCCTCTCTCA 1192
|||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1137 GATCAGCG-TCATCGTGGATCTCTCCCTCTTATCTGTGATCTTTGTCTCTCCCTCTCTCA 1195
Query 1193 TCTCGAATGTAAGATATGTCTTGTTAAATTAA 1224
||||||||||||||||||| ||||||||||||
Sbjct 1196 TCTCGAATGTAAGATATGTGTTGTTAAATTAA 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5