BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495143
Length=462
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50810.1 | Symbols: TIM8 | translocase inner membrane subuni... 608 1e-173
> AT5G50810.1 | Symbols: TIM8 | translocase inner membrane subunit
8 | chr5:20675634-20676612 REVERSE LENGTH=582
Length=582
Score = 608 bits (329), Expect = 1e-173
Identities = 432/477 (91%), Gaps = 25/477 (5%)
Strand=Plus/Plus
Query 1 GTATCCTTTTGGGG-TTTT-AG---AGTTTTTTAGGG-TTTCAGTCGCTGAGAACAA--- 51
||| |||||||||| |||| || || ||||||||| |||||||||||||||||||
Sbjct 1 GTAGCCTTTTGGGGTTTTTGAGAAAAG-TTTTTAGGGTTTTCAGTCGCTGAGAACAATTT 59
Query 52 T-TT-T-CTTCTTCTTCTTCAAGCAGAGACGCTCTCTA-CTCAACC-GACATGGATCCTA 106
| || | ||||||||||||||||||||||||||||| | ||| ||| |||||||||||||
Sbjct 60 TCTTCTCCTTCTTCTTCTTCAAGCAGAGACGCTCTC-AGCTC-ACCAGACATGGATCCTA 117
Query 107 ACATCGCAAACAACCCAGAATTGCTTCAATTCCTCGCCCAAGAGAAAGAAAGAGCAATGG 166
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GCATGGCAAACAACCCGGAATTGCTTCAATTCCTCGCCCAAGAGAAAGAAAGAGCAATGG 177
Query 167 TGAATGAAATGGTAG-CGAAGATGACAAGTGTGTGTTGGGACAAATGCATCACAAGCGCA 225
|||| |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 178 TGAACGAAATGGT-GTCGAAGATGACAAGTGTGTGCTGGGACAAATGCATCACAAGCGCA 236
Query 226 CCGGGAAGTAAGTTCAGCTCGAGCGAGAGTTCTTGCCTCACTCATTGTGCGCAACGCTAC 285
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 237 CCGGGAAGTAAGTTCAGCTCAAGCGAGAGTTCTTGCCTCACTCATTGTGCTCAACGCTAC 296
Query 286 ATGGATATGAGTATGATCCTCATGAAACGCTTTCAGTCGCAGTAAGATTGATCAAGTTGA 345
|||||||||||||||||| |||||||||||||| | ||||||||| |||||| | ||
Sbjct 297 ATGGATATGAGTATGATCATCATGAAACGCTTTAATTCGCAGTAAAATTGATT--G--GA 352
Query 346 TTTGTTATCATACTTGTTGGAATTTGAATTTATCCTTTTTGTGTTTCTCTTGGCAAGTGT 405
| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 353 G--GATATCATACTTGTTGGAATTTTAATTTATCCTTTTTTTGTTTCTCTTGGCAAGTGT 410
Query 406 TAAAAACCTTTTTATTACTCTAGTGATCTTGCAAGAGTATTCTCGGATAAGTGTTTT 462
| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TGAAATCCCTTTTATTACTCTAGTGATCTTGCAAGAGTATTCTCGGATAAGTGTTTT 467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22017274062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5