BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495145
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50830.2 | Symbols: | unknown protein; Has 4750 Blast hits ... 1812 0.0
> AT5G50830.2 | Symbols: | unknown protein; Has 4750 Blast hits
to 3160 proteins in 341 species: Archae - 14; Bacteria - 239;
Metazoa - 1329; Fungi - 394; Plants - 197; Viruses - 79;
Other Eukaryotes - 2498 (source: NCBI BLink). | chr5:20683279-20684855
FORWARD LENGTH=1328
Length=1328
Score = 1812 bits (981), Expect = 0.0
Identities = 1200/1302 (92%), Gaps = 30/1302 (2%)
Strand=Plus/Plus
Query 1 CTCGTATTCCTAATTATTATCATTCATTCATCATCCTCCCAATTAATTGGCTCTCTTCTC 60
|||| |||||||| |||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1 CTCGGATTCCTAAATATTATCATTCATTCATCATCCTCCCAACTCATTGGCTCTCTTCTC 60
Query 61 TCCTCTCCTTTGCCTATTTTTTACAATCTTCTCAGGCCACCCACCCGCCGCCGTATGATC 120
|||||||||||||||||||| || ||||||||| ||||||||||| ||| || |||||||
Sbjct 61 TCCTCTCCTTTGCCTATTTTCTAAAATCTTCTCCGGCCACCCACCGGCCACCTTATGATC 120
Query 121 TTTTTGGTGGCGGCGATTACACCATCAATTTGTTAGTTT-CTT-T-TATTAATATGGGTT 177
||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 121 TTTTTGGTGGCGGCGATTACACCATCAATTTGTTAGTTTATTTATATATTAATATGGGTT 180
Query 178 GCGGTGGCTCGAGACTTGGGGGTGTGGCGGCAACTAGGGCGGAAGAAGCCGGTGTTGTGC 237
||||||||||||| ||||| ||||||||| | || ||||||||||||| ||| |||||||
Sbjct 181 GCGGTGGCTCGAGGCTTGGAGGTGTGGCGACGACAAGGGCGGAAGAAGGCGGGGTTGTGC 240
Query 238 CACTTCCAGCTGGAATACGTCCGCTTCTCCGGCGAAGGTTAGAGGAGATGAAGAAACGGA 297
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 CACTTCCAGCGGGAATACGTCCCCTTCTCCGGCGAAGGTTAGAGGAGATGAAGAAACGGA 300
Query 298 GCCATGCAGGCGTCTTGAAAGGGAGCCAGACGTTGTCTAAGAAAGAGCTTCTTCGGCATA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GCCATGCAGGCGTCTTGAAAGGGAGCCAGACGTTGTCTAAGAAAGAGCTTCTTAGGCATA 360
Query 358 ACTCTTCCGAGGACGGAGAAGACACGGAGGAGAACGAAGGTAGCTTGAAGTCGTCGGCTA 417
|||||||||||||||||||||| |||||||||||||| |||||||||||| |||| ||||
Sbjct 361 ACTCTTCCGAGGACGGAGAAGATACGGAGGAGAACGACGGTAGCTTGAAGGCGTCCGCTA 420
Query 418 AGGTGGCTCCGGCTCCTGATCATCACGTGGAAGAGAAGAAAGAGGTTATTTATGAAAAGA 477
|||| |||||||| ||||||||| | || |||||||||||||||||||||||||||||||
Sbjct 421 AGGTTGCTCCGGCGCCTGATCATAATGTAGAAGAGAAGAAAGAGGTTATTTATGAAAAGA 480
Query 478 TTCCATCCAAAGATGATTTTAAAGAGGTGAAGGAAGAAGTGGTTGTGAAGAAACAAGAAG 537
||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||
Sbjct 481 TTCCATCCAAAGATGATGTTAAAGAGGTGAAGGAAGAAGTAGTTGTGAACAAACAAGAAG 540
Query 538 AGGAAAATCATCATCAAGATGTTGTGAAGAAACAAGATGAGGAAAATAAAGAGGTTGTGG 597
|||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 541 AGGACAATCATCATCAAGATGTTGTGGAGAAACAAGAGGAGGAAAATAAAGAGGTTGTGA 600
Query 598 AGAAACAAGATGAGGAAAATCAACATGATGATGTGG-C--CATCAATGTTAAGAAAGAAG 654
|||| ||||| ||||||||||| |||||||||||| | ||||||||||||||| ||||
Sbjct 601 AGAAGCAAGAGGAGGAAAATCATGATGATGATGTGGTCGTCATCAATGTTAAGAAGGAAG 660
Query 655 AAGATGTTGTTAAGAATCATGATGATAATGAAGGGAGTATGAACAACTTTGATGAGAGAA 714
||||| || |||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 661 GAGATGATGGTAAGAATCATGATGTTGATGAAGGGAGTATCAACAACTTTGATGAGAGAA 720
Query 715 TGATAGGTCCTGGATCTCCAAGCTTTAGGGTTTATTGCGTCGATGTTCCTTCTGATGATG 774
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGATTGGTCCTGGATCTCCAAGCTTTAGGGTTTATTGCGTCGATGTTCCTTCTGATGATG 780
Query 775 ATGATGAAGAAAAAGATGGAGAAGACACGAGAAAGTCGATGGAAACCGAAAGCGTCATGA 834
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct 781 ATGATGAAGAAAAAGATGTAGAAGACGCGAGAAAGTCGATGGAAACCGAAAGCGTCACGA 840
Query 835 CAGAGATAAAAGAGGTGGACGAAAGCATCGTCAAAAAGGATAAAAGGGAAAGAAGAGGAA 894
||||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||
Sbjct 841 CAGAGATAAAAGAGGTGGACGGAAGCATTGTCAAAAAGGAGAAAAAAGAAAGAAGAGGAA 900
Query 895 GGAGGTTCGGAATGGGATTGCCGAGGAAGTATTTAGCCAATGTGACTGCGCCATGCTATG 954
|||||||||||| | ||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 901 AGAGGTTCGGAATCGCATTGCCGAGGAAGTATTTAGCAAATGTGACTGCGCCGTGCTATG 960
Query 955 CCGGTGGAGGATGCATGGGGAACACTCATTCTCGTTTGGTGCAAGAGAAATCGAACCAGT 1014
| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 961 CAGGTGGAGGATGCATGGGAAACACTCATTCTCGTTTGGTGCAAGAGAAATCGAGCCAGT 1020
Query 1015 GAT--AT--------GTTTGCCATCTTTGCATGGACTGATTTGTTGAAGTAAGAATGGTG 1064
||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1021 GATCGATCAAAATATGTTTGCCATCTTTGCATTGACTGATTTGTTGAAGTAAGAATGGTG 1080
Query 1065 TGGTGTACGTACGGGAATGATGATGATTGATCAAAACCACCACACCATGGAAACGATTTT 1124
|||||||||||||||| | | ||||| | |||||||||||| | | |||||||
Sbjct 1081 TGGTGTACGTACGGGA-TCACGATGAATAATCAAAACCACCT-----T--A--CGATTTT 1130
Query 1125 AGACCTTTGATTTGTTTTAAGAGACGCTTGTTTCAGAATTTGTACAACCTCTTCTTC--- 1181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AGACCTTTGATTTGTTTTAAGAGACGCTTGTTTCAGAATTTGTACAACCTCTTCTTCTTC 1190
Query 1182 ACCTTTGCTTTCTTTGATCAGGATAATTAAGTTAGTGTTTGACGAATTTACTTTTTTCCA 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 ACCTTTGCTTTCTTTGATCAGGATAATTAAGTTAGTGTTTGACGAATTTACTTTTTTCCA 1250
Query 1242 CGTGGAAAGATGTAAGTAATTTGAACTTGTGCAATaaaaaaa 1283
||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1251 CGTGGAAAGATGTAATTAATT-GAACTTGTGCAATAAAAAAA 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63102085065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5