BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495151
Length=844
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50870.2 | Symbols: UBC27 | ubiquitin-conjugating enzyme 27 ... 739 0.0
> AT5G50870.2 | Symbols: UBC27 | ubiquitin-conjugating enzyme 27
| chr5:20699433-20701206 REVERSE LENGTH=1013
Length=1013
Score = 739 bits (400), Expect = 0.0
Identities = 467/497 (94%), Gaps = 14/497 (3%)
Strand=Plus/Plus
Query 1 AAGATGCAAGAAAAGAAGCTCAATTTG-TTCACC----A-A-ATAATAAAGTTTCAATCT 53
|||||||||||||||||||| || ||| |||||| | | ||||||||||||||||||
Sbjct 101 AAGATGCAAGAAAAGAAGCTGAA-TTGATTCACCAAATACACATAATAAAGTTTCAATCT 159
Query 54 -TTT-TTC-TTTAGGGTTTGGGAGAATTTCAATC-G-GATCTCTAAAAAGATGATAGATT 108
||| ||| |||||||||||||||| ||| |||| | |||||| |||||||||||||||
Sbjct 160 GTTTCTTCTTTTAGGGTTTGGGAGATTTTTAATCGGAGATCTC-GAAAAGATGATAGATT 218
Query 109 TCAGTCGAGTCCAGAAAGAGCTTCAAGATTGCGAGAGAAACCAGGATTCTTCGGGTATCC 168
|||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 219 TCAGTCGAATCCAGAAAGAGCTTCAGGACTGCGAGAGAAACCAGGATTCTTCGGGTATCC 278
Query 169 GGGTCTGCCCGAAAGCCGATAACCTCACCCGACTCACCGGAACCATTCCTGGTCCAATCG 228
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GGGTCTGCCCCAAATCCGATAACCTCACCCGACTCACCGGAACCATTCCTGGTCCAATCG 338
Query 229 GTACTCCTTACGAAGGCGGTACTTTTCAGATCGATATCACTATGCCAGAAGGGTATCCAT 288
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 339 GTACTCCTTACGAAGGCGGTACATTTCAGATCGATATCACTATGCCAGATGGGTATCCAT 398
Query 289 TTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTGGCACCCGAATATTAGTAGCCAAA 348
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 399 TTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTGGCATCCGAATATTAGTAGCCAAA 458
Query 349 GCGGTGCAATATGCTTGGATATCTTGAAAGACCAGTGGAGTCCAGCTCTTACTCTGAAGA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GCGGTGCAATATGCTTGGATATCTTGAAAGACCAGTGGAGTCCAGCTCTTACTCTGAAGA 518
Query 409 CAGCTCTTGTTTCAATCCAGGCTTTACTCTCTTCGCCAGAGCCCAAAGACCCTCAAGATG 468
|||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||
Sbjct 519 CAGCTCTTGTTTCAATTCAGGCTTTACTCTCTGCACCTGAGCCCAAAGACCCTCAAGATG 578
Query 469 CTGTTGTAGCTGAACAG 485
|||||||||||||||||
Sbjct 579 CTGTTGTAGCTGAACAG 595
Score = 496 bits (268), Expect = 2e-139
Identities = 334/365 (92%), Gaps = 8/365 (2%)
Strand=Plus/Plus
Query 485 GTACATGAAGAACTACCAAGTGTTTGTATCAACAGCTCGTTACTGGACTGAAACTTTCGC 544
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 GTACATGAAGAACTATCAAGTGTTTGTATCAACAGCTCGTTACTGGACTGAAACTTTCGC 687
Query 545 TAAGAACTCTTCTCTAGAGGAAAAAGT-AAGGAAACTCGTGGAGATGGGTTTTGGAGATG 603
||||| |||||||||||||||||||| ||| | ||| |||||||||||||||||||| |
Sbjct 688 CAAGAAATCTTCTCTAGAGGAAAAAGTCAAG-AGACTTGTGGAGATGGGTTTTGGAGACG 746
Query 604 CTCAGGTTAGGAGTGCAATTGAATCAAGTGGTGGAGATGAGAATCTGGCACTGGAAAAGC 663
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 747 CTCAAGTTAGGAGTGCAATTGAATCAAGTGGTGGTGATGAGAATCTGGCTCTGGAAAAGC 806
Query 664 TCTGTTCTGGGTAGGATCTAGCAAA-CAAGGTCTCATTGTCGCTAGATATGATATTAATT 722
||||||||| ||||||||| ||| |||| ||||||| ||||||||||| |||| |||
Sbjct 807 TCTGTTCTGCTTAGGATCTATCAACTCAAGC-CTCATTGGCGCTAGATATGTTATTTATT 865
Query 723 TGGTTTATAACTCTTATGTGCTACGTTTCTTCTCTTGCCTGCTGATAAGAGTGAAACTGC 782
||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||| |
Sbjct 866 TGGTTTATAACTCTTATGTGCTATGTTTCTGCTCTTGCCTACTGATAAGAGTGAAACTAC 925
Query 783 TTTTaaaaaaaTTATTAAATGCAATGCTATATCCATA-A--AGATCTTATCTAGTAGATC 839
||| | ||| ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 926 TTT-ATAAAGATTATTAAATGCAATGCTATATCCATACATGAGATCTTATCTAGTAGATC 984
Query 840 ATTGA 844
|||||
Sbjct 985 ATTGA 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41141766393
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5