BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495154
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1435 0.0
> AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:20710209-20712315 REVERSE
LENGTH=1345
Length=1345
Score = 1435 bits (777), Expect = 0.0
Identities = 972/1058 (92%), Gaps = 46/1058 (4%)
Strand=Plus/Plus
Query 1 GAAAAAACACTCTCCCTATCGACAAAGATAAGAGAACTCAGAAGCTTCTACTCTTAAAAT 60
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 GAAAAAACACTATCTCTATCGACAAAGATAAGAGAACTCAGAAGCTTCTACTCTTAAAAT 65
Query 61 GGCAACTTTCTCTTATTTCCAAAACTACCCTCACTCCCTTCTTGATCCTCTTCTCTTCCC 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 66 GGCAACTTTCTCTTATTTCCAAAACTACCCTCATTCCCTTCTTGATCCTCTTCTCTTCCC 125
Query 121 AACACCTCACTCCTCCATTAATATCACTGGTTTCATCGATCAAAATCATCTCCATCCACT 180
||||||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||
Sbjct 126 TACACCTCACTCCTCCATTAATCTCACTAGTTTCATCGATCAAAACCATCTCTATCCACT 185
Query 181 ACCAAACATTTCCACAGTTGAAGACATTTCCTTTAACCCATTTCTTGATGAATATAATGT 240
|||||||||||||||||||||||||| ||| || |||| | ||||||||||||
Sbjct 186 ACCAAACATTTCCACAGTTGAAGACA-----TTT---CC-TTTC-T--TGAATATAATGT 233
Query 241 TGACAGAACCGAAAACTCTGGCTT-AGAGAAACAGGCTAACACAACCAAAACCGCAACCA 299
||||| ||| ||||||||||| || |||||||| ||| |||||||||||||| |||||||
Sbjct 234 TGACAAAACTGAAAACTCTGG-TTCAGAGAAACTGGCCAACACAACCAAAACAGCAACCA 292
Query 300 CCCGTTCTTCATCCT--G--C-G---A-CCACGGATCATCAGCCATCACCACCACCGGAA 350
|| ||||||| |||| | | | | ||||||| ||||||||||||||| ||||||||
Sbjct 293 CCGGTTCTTCTTCCTGCGACCAGCTCAGCCACGGACCATCAGCCATCACCAACACCGGAA 352
Query 351 AAAACCGTGGGAGGAAGGCCAGAAA-TGTTTCTAAGTCCaaggaaggagtagagggaaga 409
||| ||||||||||||||||||||| | | ||| ||||||||||||||||||||||||
Sbjct 353 AAACCCGTGGGAGGAAGGCCAGAAACAG-TAATAACTCCAAGGAAGGAGTAGAGGGAAGA 411
Query 410 aaaagcaaaaaacagaagagaggaagcaaagaagagcctccaaaagaTTACATTCACGTT 469
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 412 AAAAGCAAAAAACAGAAGAGAGGAAGCAAAGAAGAGCCTCCAACAGATTACATTCACGTT 471
Query 470 CGAGCTAGAAGAGGCCAAGCTACTGATAGCCACAGCCTTGCCGAGAGGGTGAGAAGGGAA 529
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 472 CGAGCTAGAAGAGGCCAAGCTACTGATAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAA 531
Query 530 AAGATAAGTGAGAGGATGAGAACTCTGCAAAACCTTGTTCCGGGCTGTGATAAGGTAACA 589
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 532 AAGATAAGTGAGCGGATGAGGACTCTGCAAAACCTTGTTCCGGGCTGTGATAAGGTAACA 591
Query 590 GGGAAGGCCCTCATGTTGGATGAGATTATAAATTATGTCCAGACCTTGCAGACTCAAGTT 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GGGAAGGCCCTCATGTTGGATGAGATTATAAATTATGTCCAGACCTTGCAGACTCAAGTT 651
Query 650 GAGTTTCTCTCGATGAAGCTAACTTCTATAAGTCCGGTGGTCTATGACTTTGGTTCCGAC 709
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 652 GAGTTTCTCTCAATGAAGCTAACTTCTATAAGTCCGGTGGTCTATGACTTTGGCTCCGAC 711
Query 710 CTTGATGGCCTCATACTT-AGATCTGAGATGGGATCTCCAGAAGTAGGAACGTCTTTTAC 768
|||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 712 CTTGATGGCCTCATACTTCA-ATCTGAGATGGGTTCTCCAGAAGTAGGAACGTCTTTTAC 770
Query 769 CAATACAATGCCAACAACTACTTCTATCTTTCCTTCACTATTGGATAATTCT--A-T--- 822
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 771 CAATGCAATGCCAACAACTACTCCTATCTTTCCTTCACTATTGGATAATTCTGTAGTTCC 830
Query 823 -A-----G------TTCAGGAAGAGGGAGAAGGAAGAGAGAAGTTTGTAGACAGAAGTGG 870
| | |||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 831 CACACATGCACAAGTTCAGGAAGAGGGAGAAGAAAGAGAGAACTTTGTAGACAGAAGTGG 890
Query 871 GTTCAACAACAACAACTTCTGTTCTTTCCCTTGATAAA-TTACATGTCGACACAAACACA 929
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 891 GTTCAACAACAACAACTTCTGTTCTTTCCCTTGATAAAATTACATGTCGACACAAACACA 950
Query 930 AAAGCCTGCTTTCGTTGATTTCATTTCCTCCCATATGCACGGAGGGAATAAAATCTACGT 989
||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||
Sbjct 951 AAAGCCTGCTTTCGTTGATTTAATCTCCTCCCATTTGCACGGAGGGAATAAAATCTACGT 1010
Query 990 AAACCAGGGGTCGTAAAAGTGGACGTACTTATTTGTTC 1027
|||||||| | ||||||||||| ||||||||||||||
Sbjct 1011 AAACCAGGTTTTGTAAAAGTGGATGTACTTATTTGTTC 1048
Score = 69.4 bits (37), Expect = 7e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1069 GCAAATTCGATGGAGGAAAGAAAGACATATAAACGAAGAA 1108
|||||||||||||||||||||||||||||||||| |||||
Sbjct 1191 GCAAATTCGATGGAGGAAAGAAAGACATATAAACTAAGAA 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5