BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495156
Length=3143
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50920.1 | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | ... 4992 0.0
AT3G48870.1 | Symbols: ATCLPC, ATHSP93-III, HSP93-III | Clp ATP... 1945 0.0
> AT5G50920.1 | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1
| CLPC homologue 1 | chr5:20715469-20720374 REVERSE LENGTH=3189
Length=3189
Score = 4992 bits (2703), Expect = 0.0
Identities = 3008/3153 (95%), Gaps = 29/3153 (1%)
Strand=Plus/Plus
Query 1 AGAGAGAGAGATAAGGGAGGGTGAAACAAAATAAGCACACACCACCATATCCATCTGttt 60
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 13 AGAGAGAGAGATAAGGGAGGGTG-AA-AAAATAAGCACACACCA--TTATCCATCTGTTT 68
Query 61 ttttttttcttttcatttctctctctcttcttcttcttcgattcgttttttcCTCCATTT 120
||||||||| || | |||||||||||| |||||||||||||||| |||| ||||||||
Sbjct 69 TTTTTTTTC--ATC-TCTCTCTCTCTCTT-TTCTTCTTCGATTCGTGTTTT-CTCCATTT 123
Query 121 GATCCTCTGTTACGCTTCAATCGAACTCTGAAGTCATGGCTATGGCCACAAGGGTGCTGG 180
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 124 CATTCTCTGTTACGCTTCAATCGAACTCGGAAGTCATGGCTATGGCCACAAGGGTGTTGG 183
Query 181 CTCAATCTACTCCACCATCTTTGGCTTGTTACCAGAGGAATGTTCCCTCACGTGGATCTG 240
||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 184 CTCAATCGACTCCACCGTCTTTAGCTTGTTACCAGAGGAATGTTCCTTCACGTGGATCTG 243
Query 241 GAAGATCGAGAAGATCGGTGAAAATGATGTGTAGTCAGTTACAAGTTTCTGGCTTAAGAA 300
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 244 GAAGATCGAGAAGATCGGTGAAAATGATGTGTAGTCAGTTACAAGTGTCTGGTTTAAGAA 303
Query 301 TGCAAGGATTTATGGGATTACGTGGGAACAATGCTTTAGACACTCTAGGAAAAAACCGTC 360
||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 304 TGCAAGGGTTTATGGGATTACGTGGTAACAATGCTTTAGACACTCTTGGAAAAAGTCGTC 363
Query 361 AAGATTTCCATTCGAAGGTGCGGCAGGCGATGAATGTGCCCAAGGGGAAAGCTAGCCGGT 420
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 364 AAGATTTTCATTCGAAGGTGCGACAGGCAATGAATGTGCCCAAGGGGAAAGCTAGCCGGT 423
Query 421 TTACGGTGAAAGCAATGTTTGAAAGATTTACTGAAAAAGCTATCAAAGTTATTATGCTTG 480
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 424 TTACGGTGAAAGCAATGTTTGAAAGATTTACGGAGAAAGCTATCAAAGTTATTATGCTTG 483
Query 481 CTCAGGAGGAAGCTAGAAGACTAGGCCACAATTTTGTGGGAACCGAACAAATTCTTCTAG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 484 CTCAGGAGGAAGCTAGAAGACTAGGCCACAATTTTGTGGGAACCGAACAAATTCTTCTTG 543
Query 541 GTCTCATTGGTGAGGGTACTGGAATTGCTGCTAAAGTTTTGAAATCCATGGGGATTAACC 600
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 544 GTCTTATTGGTGAGGGTACTGGAATCGCTGCTAAAGTTTTGAAATCCATGGGGATTAA-C 602
Query 601 TT-AAAGATGCACGTGTGGAGGTAGAGAAGATTATTGGAAGGGGCAGTGGCTTTGTTGCT 659
|| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 603 TTAAAAGATGCACGTGTGGAGGTTGAGAAGATTATTGGAAGGGGAAGTGGCTTTGTTGCT 662
Query 660 GTTGAGATCCCATTCACTCCTCGTGCAAAGCGTGTTCTTGAACTCTCACTGGAGGAAGCT 719
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 663 GTTGAGATCCCATTCACTCCTCGTGCCAAGCGTGTTCTTGAACTCTCTCTTGAGGAAGCT 722
Query 720 CGCCAACTTGGTCACAATTACATTGGATCCGAGCACCTTCTT-CTTGGATTGCTACGTGA 778
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 723 CGCCAACTTGGTCACAATTACATTGGATCCGAGCACCTT-TTGCTTGGGTTGCTACGTGA 781
Query 779 AGGTGAAGGTGTTGCAGCTCGTGTCCTGGAAAATTTAGGTGCAGATCCTAGTAATATTCG 838
||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 782 AGGTGAAGGAGTTGCAGCTCGAGTCCTTGAGAATTTAGGTGCAGATCCTAGTAATATTCG 841
Query 839 CACTCAGGTGATACGCATGGTGGGTGAGAACAATGAGGTAACTGCTAATGTTGGGGGAGG 898
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 842 CACTCAGGTGATACGCATGGTGGGTGAGAACAATGAAGTAACTGCTAATGTTGGGGGAGG 901
Query 899 AAGCAGCAGCAATAAGATGCCAACTCTTGAAGAGTACGGGACAAACTTGACGAAACTGGC 958
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 902 AAGCAGCAGCAATAAGATGCCAACTCTTGAAGAGTACGGAACAAACTTGACGAAACTGGC 961
Query 959 TGAGGAGGGTAAATTGGACCCAGTTGTTGGAAGGCAGCCACAGATAGAACGTGTGGTACA 1018
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 962 TGAGGAGGGTAAATTGGACCCAGTTGTTGGAAGGCAGCCGCAGATAGAACGTGTGGTGCA 1021
Query 1019 AATTCTTGGCAGGAGAACCAAGAACAACCCTTGTCTTATTGGAGAACCTGGTGTTGGTAA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 AATTCTTGGCAGGAGAACCAAGAACAACCCTTGTCTTATTGGAGAACCTGGTGTTGGTAA 1081
Query 1079 GACAGCTATTGCTGAAGGACTTGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACCAT 1138
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||
Sbjct 1082 GACAGCTATTGCTGAAGGACTTGCACAGCGTATTGCCAGTGGCGATGTCCCTGAAACTAT 1141
Query 1139 TGAAGGGAAGAAGGTTATAACACTTGACATGGGTCTTCTAGTTGCTGGAACAAAATATCG 1198
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1142 TGAAGGGAAGAAGGTTATAACACTCGACATGGGTCTTCTAGTTGCTGGAACAAAATATCG 1201
Query 1199 TGGAGAGTTTGAAGAGAGATT-AAAGAAGCTTATGGAGGAAATAAGACAGAGCGACGAGA 1257
||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1202 TGGAGAGTTTGAAGAGAGATTGAAA-AAGCTTATGGAGGAAATTAGACAGAGCGATGAGA 1260
Query 1258 TAATCTTATTTATCGATGAAGTGCATACTTTGATTGGGGCTGGAGCAGCGGAAGGTGCAA 1317
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1261 TAATCTTATTTATCGACGAAGTGCATACTTTGATTGGGGCTGGAGCAGCAGAAGGTGCAA 1320
Query 1318 TTGATGCAGCTAACATTTTAAAACCAGCTCTCGCTAGAGGTGAATTGCAGTGCATTGGAG 1377
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTGACGCAGCTAACATTTTAAAACCAGCTCTCGCTAGAGGTGAATTGCAGTGCATTGGAG 1380
Query 1378 CGACAACATTAGATGAATACCGAAAGCACATTGAGAAAGACCCTGCGTTGGAAAGAAGAT 1437
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1381 CGACAACATTAGATGAATACCGAAAGCACATTGAGAAAGACCCTGCCTTGGAAAGAAGAT 1440
Query 1438 TCCAGCCGGTGAAAGTACCTGAACCTACCGTGGATGAAACTATTCAGATTCTTAAGGGTC 1497
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1441 TCCAGCCAGTGAAAGTACCTGAACCTACCGTGGATGAAACTATTCAGATCCTTAAGGGTC 1500
Query 1498 TGCGAGAGAGATATGAAATTCACCACAAGCTTCGTTACACTGACGATTCTTTAGTAGCAG 1557
|||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1501 TGCGAGAGCGATATGAAATTCACCACAAGCTTCGTTACACAGACGAATCTTTAGTAGCAG 1560
Query 1558 CTGCACAGTTGTCATACCAGTATATTAGTGATCGTTTCCTTCCTGACAAGGCAATTGACT 1617
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1561 CTGCACAGTTGTCATACCAGTATATAAGTGATCGTTTCCTTCCTGACAAGGCAATTGACT 1620
Query 1618 TGATCGATGAAGCTGGTTCTCGGGTTCGACTTCGTCATGCACAGGTCCCTGAGGAAGCTA 1677
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TGATTGATGAAGCTGGTTCTCGGGTTCGACTTCGTCATGCACAGGTCCCTGAGGAAGCTA 1680
Query 1678 GGGAGCTTGAGAAGGAGCTTAGGCAGATAACAAAGGAGAAGAATGAAGCTGTCCGTGGCC 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GGGAGCTTGAGAAGGAGCTTAGGCAGATAACAAAGGAGAAGAATGAAGCTGTCCGTGGCC 1740
Query 1738 AAGACTTTGAGAAGGCTGGGACACTTCGGGATAGAGAAATTGAACTCAGAGCTGAGGTAT 1797
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 AGGACTTTGAGAAGGCTGGGACACTTCGGGATAGAGAAATTGAACTCAGAGCTGAGGTAT 1800
Query 1798 CTGCTATCCAAGCGAAAGGTAAGGAGATGAGCAAAGCAGAGAGTGAGACTGGTGAGGAAG 1857
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1801 CTGCAATCCAAGCGAAAGGCAAGGAGATGAGCAAAGCAGAGAGTGAGACCGGTGAGGAAG 1860
Query 1858 GTCCTATGGTCACGGAGTCAGACATCCAACACATTGTATCTTCATGGACTGGTATTCCCG 1917
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1861 GCCCTATGGTCACGGAGTCAGACATCCAACACATTGTGTCTTCATGGACTGGTATTCCTG 1920
Query 1918 TAGAGAAAGTATCAACTGATGAGTCTGATCGCCTCCTCAAGATGGAAGAAACCCTCCACA 1977
| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1921 TTGAGAAAGTATCAACCGATGAGTCTGACCGTCTCCTCAAGATGGAAGAAACCCTCCACA 1980
Query 1978 AACGTATCATAGGCCAAGACGAAGCTGTGAAAGCCATAAGCCGAGCCATTCGCCGTGCAC 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 AACGTATCATAGGCCAAGACGAAGCTGTGAAAGCCATAAGCCGAGCCATTCGCCGTGCAC 2040
Query 2038 GTGTTGGACTCAAGAACCCTAACCGTCCAATAGCTAGTTTCATATTCTCGGGTCCAACCG 2097
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2041 GTGTTGGACTCAAGAATCCTAACCGTCCAATCGCTAGTTTCATATTCTCGGGTCCAACCG 2100
Query 2098 GTGTTGGGAAATCCGAGCTTGCCAAAACTTTGGCAGCTTACTACTTCGGCTCTGAGGAAG 2157
||||||||||||| |||||||||||| |||| ||||||||||||||||| || || ||||
Sbjct 2101 GTGTTGGGAAATCTGAGCTTGCCAAAGCTTTAGCAGCTTACTACTTCGGTTCCGAAGAAG 2160
Query 2158 CCATGATTCGTCTAGATATGAGTGAGTTCATGGAGAGGCACACTGTCTCCAAACTCATTG 2217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2161 CCATGATTCGTCTAGATATGAGTGAGTTCATGGAGAGGCACACTGTCTCCAAACTCATCG 2220
Query 2218 GATCACCTCCTGGATACGTCGGGTACACAGAAGGAGGTCAGCTAACAGAAGCAGTTAGGC 2277
| |||||||||||||| ||||| ||||| |||||||||||| |||||||||| ||||| |
Sbjct 2221 GTTCACCTCCTGGATATGTCGGATACACCGAAGGAGGTCAGTTAACAGAAGCGGTTAGAC 2280
Query 2278 GTCGCCCTTACACCGTCGTTCTATTCGACGAGATCGAAAAAGCCCATCCAGATGTTTTCA 2337
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2281 GTCGCCCTTACACCGTCGTTCTATTCGATGAGATTGAAAAAGCCCATCCAGATGTTTTCA 2340
Query 2338 ACATGATGCTTCAAATCCTTGAAGACGGTAGATTAACAGACAGCAAAGGAAGAACAGTTG 2397
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2341 ACATGATGCTTCAAATCCTTGAAGATGGTAGATTAACAGACAGCAAAGGAAGAACAGTTG 2400
Query 2398 ACTTCAAAAACACACTTCTCATCATGACATCAAACGTTGGAAGCAGCGTGATCGAAAAAG 2457
||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 2401 ACTTCAAAAACACACTTCTCATCATGACATCAAACGTCGGAAGCAGCGTGATTGAGAAAG 2460
Query 2458 GAGGAAGACGTATCGGGTTCGACTTAGATTACGACGAGAAAGACAGCAGTTACAACAGAA 2517
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2461 GAGGAAGACGTATCGGATTCGACTTAGACTACGACGAGAAAGACAGCAGTTACAACAGAA 2520
Query 2518 TCAAGAGCCTTGTGACCGAGGAGCTGAAACAGTACTTCAGACCCGAGTTCTTGAACAGGC 2577
||||||||||||| || |||||||||||||| |||||||||||||||||| | |||||||
Sbjct 2521 TCAAGAGCCTTGTAACAGAGGAGCTGAAACAATACTTCAGACCCGAGTTCCTAAACAGGC 2580
Query 2578 TAGACGAGATGATTGTGTTCAGACAGCTAACAAAACTGGAAGTGAAAGAAATTGCTGACA 2637
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2581 TAGACGAGATGATTGTGTTCAGACAGCTAACAAAGCTGGAAGTGAAAGAAATTGCTGACA 2640
Query 2638 TACTGTTGAAGGAAGTGTTCGAGAGGTTAAAGAAGAAGGAGATCGAGCTCCAGGTGACTG 2697
|||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||| |
Sbjct 2641 TACTGTTGAAGGAAGTGTTCGAGAGGTTGAAGAAGAAAGAGATTGAGCTTCAGGTGACCG 2700
Query 2698 AGAGGTTCAAAGAGAGAGTAGTAGACGAAGGTTATAACCCGAGCTATGGAGCGAGACCGT 2757
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2701 AAAGATTCAAAGAGAGAGTAGTAGACGAAGGTTATAACCCGAGCTATGGAGCAAGACCGT 2760
Query 2758 TGAGAAGAGCCATCATGAGGCTTTTAGAGGATAGTATGGCAGAGAAAATGCTTGCGAGAG 2817
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2761 TGAGAAGAGCCATCATGAGGCTTTTAGAGGATAGTATGGCAGAGAAGATGCTTGCGAGAG 2820
Query 2818 AGATTAAAGAAGGAGACTCGGTGATTGTGGACGTTGACGCTGAAGGTAACGTCACGGTGC 2877
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2821 AGATCAAAGAAGGAGACTCGGTGATTGTGGACGTTGACGCTGAAGGTAACGTCACGGTGC 2880
Query 2878 TAAATGGTGGAAGTGGCACTCCAACTACTTCCTTGGAAGAGCAGGAAGATTCTCTCCCCG 2937
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2881 TAAATGGTGGAAGTGGCACTCCAACTACTTCCTTGGAGGAGCAGGAAGATTCTCTCCCTG 2940
Query 2938 TTGCTTGAATaaaaaaaaGGCAAAGTGCGT---TT-CTCT-T-CTTTTGCTTTGGCCCCT 2991
|||||| |||||||||| | |||||||||| || |||| | ||||||||||||||| |
Sbjct 2941 TTGCTTAAATAAAAAAA-G-CAAAGTGCGTGCGTTTCTCTCTTCTTTTGCTTTGGCCCTT 2998
Query 2992 AAATGAATTATGGCAAGAGAAGGTTATGAATTGAGATATTTGGGGGCTTTCTTAATATAC 3051
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2999 AAATGAATTATGGCAAGAGAAGGTTATGAATTGAGATACATGGGGGCTTTCTTAATATAC 3058
Query 3052 ATTTTCTAAATATATGaaaaaaaTGTAATGTATAGATGACATTGTGTAGCTTCTTCTTTT 3111
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 3059 ATTTTCTAAATATATGAAAAA--TGTAATGTATAGATGACATTGTGTAGCTTCTT-TTT- 3114
Query 3112 CTTCCATGCTTTTTAAGGACTT-TGCTTTGGTG 3143
|||||||||||||||||||||| | ||||||||
Sbjct 3115 CTTCCATGCTTTTTAAGGACTTGT-CTTTGGTG 3146
> AT3G48870.1 | Symbols: ATCLPC, ATHSP93-III, HSP93-III | Clp ATPase
| chr3:18122198-18126638 REVERSE LENGTH=3157
Length=3157
Score = 1945 bits (1053), Expect = 0.0
Identities = 2020/2481 (81%), Gaps = 89/2481 (4%)
Strand=Plus/Plus
Query 429 AAAGCAATGTTTGAAAGATTTACTGAAAAAGCTATCAAAGTTATTATGCTTG-CTCAGGA 487
|||||||||||||| | ||||| || ||||| || || || || |||| || |||| ||
Sbjct 467 AAAGCAATGTTTGAGCGTTTTACCGAGAAAGCAATTAAGGTCATAATGC-TGTCTCAAGA 525
Query 488 GGAAGCTAGAAGACTAGGCCACAATTTTG-TGGGAACCGAACAAATTCT-TCTAGGTCTC 545
||||||| | ||||| ||||| || |||| |||| || || ||||| || | | |||||
Sbjct 526 GGAAGCTCGGAGACTTGGCCATAACTTTGTTGGG-ACTGAGCAAATACTGT-TGGGTCTA 583
Query 546 ATTGGTG-AGGGTACTGGAATTGCTGCTAAAGTT-TTGAAATCCATGGGGATTAACCTTA 603
||||| | |||| ||||| ||||| || || ||| || |||||||||||||| || ||||
Sbjct 584 ATTGGAGAAGGG-ACTGGGATTGCCGCCAAGGTTCTT-AAATCCATGGGGATCAATCTTA 641
Query 604 AAGATGCACGTGTGGAGGTAGAGAAGATTATTGGAAGGGGCAGTGGCTTTGTTGCTGTTG 663
||||| |||| ||||| ||||| ||||| ||||| || |||||||| || || || || |
Sbjct 642 AAGATTCACGCGTGGAAGTAGAAAAGATAATTGGGAGAGGCAGTGGATTCGTGGCAGTGG 701
Query 664 AGATCCCATTCACTCCTCGTGCAAAGCGTGTTCTTGAACTCTCACTGGAGGAAGCTCGCC 723
|||| ||||| |||||||| |||||||| || || || | ||||| ||||||||||| |
Sbjct 702 AGATTCCATTTACTCCTCGCGCAAAGCGGGTGCTGGAGTTGTCACTAGAGGAAGCTCGAC 761
Query 724 AACTTGGTCACAATTACATTGGATCCGAGCACCTTCTT-CTTGGAT-TGCTACGTGAAGG 781
||||||| || || |||||||| || ||||||||| || ||||| | | || ||||||||
Sbjct 762 AACTTGGGCATAACTACATTGGTTCAGAGCACCTT-TTGCTTGG-TCTACTTCGTGAAGG 819
Query 782 TGAAGGTGTTGCAGCTCGTGTCCTGGAAAATTTAGGTGCAGATCCTAGTAATATTCGCAC 841
|| ||||| |||||||||||| |||| ||||| |||||||||||||||||||| || ||
Sbjct 820 GGAGGGTGTGGCAGCTCGTGTCTTGGAGAATTTGGGTGCAGATCCTAGTAATATACGGAC 879
Query 842 TCAGGTGATACGCATGGT-GGGTGAGAACAATGAGGTAACTGCTAA-TGTTGG-GGGAGG 898
||||| ||||| ||||| ||| || |||||||| || || || || ||||| ||| ||
Sbjct 880 ACAGGTTATACGTATGGTCGGG-GAAAACAATGAAGTCACAGC-AAGCGTTGGTGGG-GG 936
Query 899 AAGCAGC---AGCAATAAGATGCCAACTCTTGAAGAGTACGGGACAAACTTGACGAAACT 955
||||||| | || || |||||||| ||||||||||| ||||| ||||| || |||||
Sbjct 937 AAGCAGCGGAAACAGCAAAATGCCAACACTTGAAGAGTATGGGACTAACTTAACTAAACT 996
Query 956 GGCTGAGGAGGGTAAATTGGACCCAGTTGTTGGAAGGCAGCCACAGATAGAACGTGTGGT 1015
|| |||||||||||| |||| || ||||||||||||||||||||||| ||||| |||||
Sbjct 997 AGCAGAGGAGGGTAAACTGGATCCGGTTGTTGGAAGGCAGCCACAGATCGAACGAGTGGT 1056
Query 1016 ACAAATTCTTGGC-AGGAGAACCAAGAACAACCCTTGTCTTATTGGAGAACCTGGTGTTG 1074
|| | ||||||| | ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1057 CCAGA-TCTTGGCTCGAAGAACCAAGAACAACCCATGTCTTATTGGAGAACCTGGAGTTG 1115
Query 1075 GTAAGACAGCTATTGCTGAAGGACTTGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAA 1134
||||||| || || || ||||||||||| ||||| || || ||||| |||||||||||||
Sbjct 1116 GTAAGACGGCAATAGCAGAAGGACTTGCACAGCGAATAGCTAGTGGTGATGTTCCTGAAA 1175
Query 1135 CCATTGAAGGGAAGAAGGTTATAACACTTGACATGGGTCTTCTAGTTGCTGGAACAAAAT 1194
| || || ||||||| ||||||||| ||||| |||||||||||||| |||||||| ||||
Sbjct 1176 CAATCGAGGGGAAGACGGTTATAACCCTTGATATGGGTCTTCTAGTGGCTGGAACGAAAT 1235
Query 1195 ATCGTGGAGAGTTTGAAGAGAGATTAAAGAAGCTTATGGAGGAAATAAGACAGAGCGACG 1254
| ||||||||||| || || ||||| |||||||||||||||||||| || || || || |
Sbjct 1236 ACCGTGGAGAGTTCGAGGAAAGATTGAAGAAGCTTATGGAGGAAATCAGGCAAAGTGATG 1295
Query 1255 AGATAA-TCTTATTTATCGATGAAGTGCATACTTTGATTGGGGCTGGAGCAGCGGAAGGT 1313
|||||| || | ||||| ||||||||||| || | || || || ||||| || ||||||
Sbjct 1296 AGATAATTC-TGTTTATTGATGAAGTGCACACGCTCATCGGTGCAGGAGCCGCTGAAGGT 1354
Query 1314 GCAATTGATGCAGCTAACATTTTAAAACCAGCTCTCGCTAGAGGTGAATTGCAGTGCATT 1373
|| || ||||| |||||||| ||||| |||||||| || ||||||||||||||||| |||
Sbjct 1355 GCGATCGATGCTGCTAACATCTTAAAGCCAGCTCTAGCAAGAGGTGAATTGCAGTGTATT 1414
Query 1374 GGAGCGACAAC-ATTAGATGAATAC-CGAAAGCACATTGAGAAAGACCCTGCGTTGGAAA 1431
|| || ||||| ||| ||||| ||| |||| |||||||||||||| ||||| ||||| |
Sbjct 1415 GGTGCAACAACAATT-GATGAGTACAGGAAA-CACATTGAGAAAGATCCTGCATTGGAGA 1472
Query 1432 GAAGATTCCAGCCGGTGAAAGTACCTGAACCTACCGTGGATGAAACTATTCAGATTCTT- 1490
|| | |||||||| ||||||||||||||||| || || || ||| |||| |||||| ||
Sbjct 1473 GACGGTTCCAGCCTGTGAAAGTACCTGAACCAACTGTAGAAGAAGCTATACAGATT-TTG 1531
Query 1491 -AAGGGTCTGCGAGAGAGATATGAAATTCACCACAAGCTTCGTTACACTGACGATTCTTT 1549
|| |||||||| ||| | ||||| || |||||||| ||||| |||||||| || | ||
Sbjct 1532 CAA-GGTCTGCGTGAGCGCTATGAGATCCACCACAAACTTCGATACACTGATGAAGCCTT 1590
Query 1550 AGTAGCAGCTGCACAGTTGTCATACCAGTATATTAGTGATC-GTTTCCTTCCTGACAAGG 1608
|| || |||||||| |||||| | ||||| || ||||||| |||| ||||| ||||| |
Sbjct 1591 GGTTGCTGCTGCACAATTGTCACATCAGTACATCAGTGATCGGTTT-CTTCCCGACAAAG 1649
Query 1609 CAATTGACTTGATCGATGAAGCTGGTTCTCGGGTTCGACTTCGTCATGCACAGGTCCCTG 1668
| ||||||||||| ||||||||||| |||||||||||||| || ||||| ||| | ||||
Sbjct 1650 CGATTGACTTGATTGATGAAGCTGGGTCTCGGGTTCGACTACGCCATGCTCAGCTTCCTG 1709
Query 1669 AGGAAGCTAGGGAGCTTGAGAAGGAGCTTAGGCAGAT-AACAAAGGAGAAGAATGAAGCT 1727
|||||||||| |||||||| ||| | || ||||| || | |||| |||||||||||||||
Sbjct 1710 AGGAAGCTAGAGAGCTTGAAAAGCAACTCAGGCAAATCACCAAA-GAGAAGAATGAAGCT 1768
Query 1728 GTCCGTGGCCAAGACTTTGAGAAGGCTGGGACACTTCGGGATAGAGAAATTGAACTC-AG 1786
|| || |||||||||| |||| |||||| | | ||| || | ||||| || ||| ||
Sbjct 1769 GTGCGAAGCCAAGACTTCGAGATGGCTGGTTCTCATCGTGACCGTGAAATAGAGCTCAAG 1828
Query 1787 AGCTGAGGTATCTGCTATCCAAGCGAAAGG-TAAGGAGATGAG-CAAAGCAGAGAGTG-A 1843
|||||| || || | | | | ||| ||| || || | |||||| |||| || |
Sbjct 1829 -GCTGAGATAGCTAATGTTTTATCTCGAGGCAAAGAAG-TG-GCCAAAGCCGAGAATGAA 1885
Query 1844 GACTG-GTG-AGGAAGGTCCTA-TGGTCACGGAGTCAGACATCCAACACATTGTATCTTC 1900
| ||| | | ||| ||| |||| | ||||| || || |||||||||||||| || | |
Sbjct 1886 G-CTGAG-GAAGG-AGGACCTACT-GTCACAGAATCTGACATCCAACACATCGTCGCCAC 1941
Query 1901 ATGGACTGGTATTCCC-GTAGAGAAAGTATCAACTGATGAGTCTGA-TCGCCTCCT-CAA 1957
||||| || | |||| ||||||||||| || ||||||| ||| | || || || |||
Sbjct 1942 CTGGACAGG-AATCCCGGTAGAGAAAGTCTCGTCTGATGAATCT-AGCCGTCTTCTCCAA 1999
Query 1958 GATGGAAG-AAACCCTCCACA-AACGTA-TCATAGGCCAAGACGAAGCTGTGAAAGCCAT 2014
|||| || | ||||| |||| || | | |||| |||||||| ||||| || ||||| ||
Sbjct 2000 -ATGG-AGCAGACCCTTCACACAA-G-AGTCATTGGCCAAGATGAAGCCGTTAAAGCAAT 2055
Query 2015 AAGCCGAGCCATTCGCCGTGCACGTGTTGGACTCAAGAACCCTAACCGTCCAATAGCTAG 2074
|| || || || |||||||| |||||||| ||||| ||||| |||||||| || || ||
Sbjct 2056 CAGTCGGGCTATCCGCCGTGCCCGTGTTGGGCTCAAAAACCCAAACCGTCCTATCGCCAG 2115
Query 2075 TTTCATATTCTCGGGTCCAACCGGTGTTGGGAAATCCGAGCTTGCCAAAACTTTGGCAGC 2134
|||||| ||||| |||||||| |||||||||||||| |||||||| || | ||||| ||
Sbjct 2116 TTTCATCTTCTCTGGTCCAACTGGTGTTGGGAAATCAGAGCTTGCTAAGGCCTTGGCTGC 2175
Query 2135 TTACTACTTCGGCTCTGAGGAAGCCATGATTCGTCTAGATATGAGTGAGTTCATGGAGA- 2193
|||||||||||| || || ||||| ||||| ||||| || ||||||||||||||||| |
Sbjct 2176 TTACTACTTCGGTTCAGAAGAAGCAATGATCCGTCTTGACATGAGTGAGTTCATGGA-AC 2234
Query 2194 GGCACACTGTCTCCAAACTCATTGGATCACCTCCTGGATACGTCGGGTACACAGAAGGAG 2253
| |||||||| || |||||||| || ||||||||||| ||||| || |||||||||||||
Sbjct 2235 GACACACTGTTTCGAAACTCATCGGTTCACCTCCTGGTTACGTAGGATACACAGAAGGAG 2294
Query 2254 GTCAGCTAACAGAAGCAGTTAGGCGTC--GCCCTTACAC-CGTCGTTCTATTCGACGAGA 2310
||||| ||||||| || ||| | || | |||| ||||| | | ||||| || ||||| |
Sbjct 2295 GTCAGTTAACAGAGGCGGTTCGACG-CAGGCCC-TACACTC-TTGTTCTCTTTGACGAAA 2351
Query 2311 TCGAAAAAGCCCATCCAGATGTTTTCAACATGATGCTTCAAATCCTTGAAGACGGTAGAT 2370
| || ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2352 TTGAGAAAGCACATCCCGATGTTTTCAACATGATGCTTCAGATCCTAGAAGACGGTAGAC 2411
Query 2371 TAACAGACAGCAAAGGAAGAACAGTTGACTTCAAAAACACACTTCTCATCATGACATCAA 2430
|||| || |||||||||||||| || || ||||| ||||| ||||| |||||||| ||||
Sbjct 2412 TAACTGATAGCAAAGGAAGAACTGTCGATTTCAAGAACACGCTTCTGATCATGACTTCAA 2471
Query 2431 ACGTTGGAAGCAGCGTGATCGAAAAAGGAGGAAGACGTATCGGGTTCGA-CTTAGATTAC 2489
|||| || |||||||||||||||||||| || ||| | || ||||| || ||| || ||
Sbjct 2472 ACGTAGGGAGCAGCGTGATCGAAAAAGGTGGTAGAAGAATTGGGTTTGATCTT-GACCAC 2530
Query 2490 GACGAGAAAGACAGCAGTTACAACAGAATCAAGAGCCTT-GTGACCGAGGAGCTGAAACA 2548
|||||||||||||||||||||||||||||||||||| || ||||| ||||| || |||||
Sbjct 2531 GACGAGAAAGACAGCAGTTACAACAGAATCAAGAGC-TTAGTGACTGAGGAACTAAAACA 2589
Query 2549 GTACTTCAGACCCGAGTTCTTGAACAGGCTAGACGAGATGATTGTGTTCAGACAGCTAAC 2608
||| |||||||| ||||||||||||||| |||| ||||||||||| ||||||||| ||||
Sbjct 2590 GTATTTCAGACCAGAGTTCTTGAACAGGTTAGATGAGATGATTGTTTTCAGACAGTTAAC 2649
Query 2609 AAAACTGGAAGTGAAAGAAATTGCTGACATACTG-TTGAAGGAAGTGTT--CGAGAGGTT 2665
||| |||||||| || || |||||||| ||| || || ||| ||||| | ||||| ||
Sbjct 2650 AAAGCTGGAAGTCAAGGAGATTGCTGATATAATGCTTAAAG-AAGTGGTGGCGAGAC-TT 2707
Query 2666 AAAGA-AGAAGGAGATCGAGCTCCAGGTGACTGAGAGGTTCAAAGAGAGAGTAGTAGACG 2724
| | | ||| |||| ||||| ||||||||||||||||| ||||||||||| || || |
Sbjct 2708 GAGGTCA-AAG-AGATTGAGCTTCAGGTGACTGAGAGGTTTAAAGAGAGAGTGGTGGATG 2765
Query 2725 AAGG-TTATAACCCGAGCTATGGAGCGAGACCG-TTGAGAAGAGCCATCATGAGGCTTTT 2782
|||| || | |||||| ||||| ||||| || || ||| | || || |||||||||||
Sbjct 2766 AAGGATTCGA-CCCGAGTTATGGTGCGAGGCCACTT-AGACGTGCAATAATGAGGCTTTT 2823
Query 2783 AGAGGATAGTATGGCAGAGAAAATGCTTGCGAGAGAGATTAAAGAAGGAGACTCGGTGAT 2842
|||||||||||||| ||||| |||||| | || || |||||||||||||| || |||||
Sbjct 2824 GGAGGATAGTATGGCGGAGAAGATGCTTTCAAGGGACATTAAAGAAGGAGATTCTGTGAT 2883
Query 2843 TGTGGACGTTGACGCTGAAGG 2863
||| || ||||| || |||||
Sbjct 2884 TGTTGATGTTGATGCCGAAGG 2904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 156320194388
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5