BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495163
Length=1726
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50970.1 | Symbols: | transducin family protein / WD-40 rep... 2564 0.0
> AT5G50970.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:20736337-20739295 FORWARD LENGTH=1742
Length=1742
Score = 2564 bits (1388), Expect = 0.0
Identities = 1621/1732 (94%), Gaps = 21/1732 (1%)
Strand=Plus/Plus
Query 1 AAGAACCAATCCACCCACAAGTTTTGGAATCAGAAATGAGTGAGCTTTGTACGAACCCTA 60
|||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||
Sbjct 6 AAGAACCAATCCACCCACAAGTGTTGGAATTAGAAATGAGCGAGCTTTGTACGAATCCTA 65
Query 61 AGAAACCCAAACTCAAAGAAGATGACGAAGACGAAGAAGCTAATGTCTCTTGCAAAGAAG 120
|||||||||||||||||||||| || ||||| |||||||||||||||||||||| |||||
Sbjct 66 AGAAACCCAAACTCAAAGAAGAAGATGAAGAAGAAGAAGCTAATGTCTCTTGCAGAGAAG 125
Query 121 AGCAAGAAGAAGTTCTTGTTGCTTTAGTAGAGCATCGTTCTAATGAAATTGAGCGTCTTA 180
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 126 AGCAAGAAGAAGTTCTTGTTGCTTTAGTAGAGCACCGTTCTAATGAAATTGAGCGTCTCA 185
Query 181 ACCATCACATATCTAATTACCAAAACAAGCTTGTTGAAGCAGAAAGAAGTTTGCAGAATT 240
|| ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||
Sbjct 186 ACAATCACATATCTAATTACCAAACCAAGCTTATTGAAGCAGAGAGAAGTTTGCAGAATT 245
Query 241 CAAAAGCCAAGTTAGCTCAACTTCGTGGAGTTTCAGTTCCATCTAT---TAGTGCAAAGA 297
||||||| ||| |||||||||||||||||||| ||||||||||||| | |||||||||
Sbjct 246 CAAAAGCTAAGCTAGCTCAACTTCGTGGAGTTGCAGTTCCATCTATCAGTGGTGCAAAGA 305
Query 298 AAGATAATAAACCATTGAAGACTCTT-AGAAATGTGAATGTGAGTGAAGACTATGCATCT 356
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 306 AAGATCATAAACCATTGAAGACT-TTGAGAAATGTGAATGTGAGTGAAGACTATGCATCT 364
Query 357 CCATCACCTAGCAAGACTCTAAAACCTTGTGATAGCTCTGATCATCCCAGAAGTAGTTGT 416
|||||||||||||||||||||| || | |||||||||||||||||| ||||||||||||
Sbjct 365 CCATCACCTAGCAAGACTCTAAGGCCCTCTGATAGCTCTGATCATCCTAGAAGTAGTTGT 424
Query 417 GGTAGTAGTGTATCCAAGGCTAAGACTGTTGTTGTGAAGCAAAAATCTGAAACATCTCGT 476
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GGTAGTAGTGTCTCCAAGGCTAAGACTGTTGTTGTGAAGCAAAAATCTGAAACATCTCGT 484
Query 477 GATAGTCCTAATGTTAAAGATAGAGGGATGAAGAGGAAATGTGAGCAAAAGGAGCATAAA 536
||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||
Sbjct 485 GATAGTCCTAATGTTAAAGATAGAGGGATCAAGAGGAAATTTGAGCAAAAAGAGCATAAA 544
Query 537 GAGTTGATTCGGTTGATAGCTAGAAACTCTTCACCAACTACAATTAAGTGTCATACTAGC 596
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 545 GAGTTGATTCGGTTGATAGCGAGAAACTCTTCACCAACTACAATCAAGTGTCATACTAGT 604
Query 597 AACCAAATCTCTAGTCAGCATAAGAGGAAATTAAGAAGCTTGATTTTGTGTCCTGTAAAT 656
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 605 AACCAAATCTCTAGTCAGCATAAGAGGAAATTAAGAAGCTTGATATTGTGTCCTGTAAAT 664
Query 657 GAGCAGTTGTTTGCAACAAGTTCTCTGGATGGAATGGTCAGTTTATGGCAACTGCAGCCT 716
|||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct 665 GAGCAGTTGTTTGCAACAAGTTCTTTGGATGGCATGGTTAGTTTATGGCAACTGCAGCCT 724
Query 717 GGAAGATTGGCTGCATCATTGCTTAGTACTACCGACTGTTTATCTCGAAAACAAAGAAGA 776
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 GGAAGATTGGTTGCATCATTGCTTAGTACTACCGACTGTTTATCTCGAAAACAAAGAAGA 784
Query 777 TGGGCAGAAGATATGGCATGGCACCCATCTGGGAACACCCTTTTCTCTGTATACACTGCA 836
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 785 TGGGCAGAAGATATGGCGTGGCACCCATCTGGGAACACTCTTTTCTCTGTGTACACTGCA 844
Query 837 GACGATGGGGATTCTCAGATATCGATCTTAAACCTTAACAAGACACGTGGGGTTACTTTC 896
||||||||||||||||||||||||||| |||| || ||||||||||| | ||||||||||
Sbjct 845 GACGATGGGGATTCTCAGATATCGATCCTAAATCTGAACAAGACACGCGAGGTTACTTTC 904
Query 897 CTGGAGAATAAACCTCACGTAAAAGGGATTATCAACAACATTAAGTTCATGCCTTGGGAA 956
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 905 CTGGAAAATAAACCTCACGTAAAAGGGATTATCAACAACATAAAGTTCATGCCTTGGGAA 964
Query 957 AGTACCTGCTTTGTCACTGGGGGAAGTGATCACGCTGTTGTTCTATGGAACGAGAGTGAT 1016
| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 965 AATACATGCTTTGTCACAGGGGGAAGTGATCACGCTGTTGTACTATGGAACGAGAGTGAT 1024
Query 1017 GATGAAGAAAACAAATGGAAGTCAAAAACTTTACACAGGAATCTACATTCAGCTGCTGTA 1076
||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 1025 GATGAAGAAAACAAATGGAAGTCGAAACCTTTACACAGAAATCTACATTCAGCTGCTGTA 1084
Query 1077 ATGGGAGTGGATGGGATGAGAAACAAGAATGTTGTCTTATCAGTTGGAGCGGACAAGAGA 1136
||||||||||||||||||| ||||||||||||| | |||||||| ||||| |||||||||
Sbjct 1085 ATGGGAGTGGATGGGATGAAAAACAAGAATGTTATTTTATCAGTAGGAGCAGACAAGAGA 1144
Query 1137 ATATACGGGTTTGATATTCAAGTTGGTAGAGCAGACTACAAGCATCAAATAGACTATAGA 1196
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1145 ATATACGGATTTGATGTTCAAGTTGGTAGAGCAGACTACAAGCATCAAATAGACTATAAA 1204
Query 1197 TGCATGAGCATTCTTGCTAATCCTTGTGACTTCAATCTGTTCATGGTTCAATCTGGGGAA 1256
||||||||| | || ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1205 TGCATGAGCGTCCTCGCTAATCCTTGTGACTTCAATCTTTTCATGGTTCAATCCGGGGAA 1264
Query 1257 CCCGAGAAACAGCTTCGACTGTTTGATATCAGATTAAGGAAAACTGAACTGCATTCGTTT 1316
|||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||
Sbjct 1265 CCCGAGAAACAGCTTCGACTGTTTGATATCAGGTTAAGAAAAACCGAACTCCATTCGTTT 1324
Query 1317 GGATGGAAGCAAGACAGCAGTGAATCACAATCAGCTTTAATAAACCAGTCTTGGTCTCCT 1376
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1325 GGGTGGAAGCAAGACAGCAGTGAATCACAATCAGCTCTAATAAACCAGTCTTGGTCTCCT 1384
Query 1377 GATGGTTTATACATAACCTCAGGCTCAGTAGACCCAGTCATCCATGTTTTTGACATCAGG 1436
|||||||||||||| ||||| |||||||| || || || |||||||||||||||||||||
Sbjct 1385 GATGGTTTATACATCACCTCTGGCTCAGTTGATCCGGTGATCCATGTTTTTGACATCAGG 1444
Query 1437 TACAATGCTCGGAAGCCAACACAATCGATAAAAGCGCATCAGAAACGAGTGTTTAAAGCG 1496
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1445 TACAATGCTCGTAAGCCGACACAATCAATAAAAGCGCATCAGAAACGAGTGTTTAAAGCG 1504
Query 1497 GAATGGCATTACTCTCAACCACTTCTCATCTCAATATCTTCTGATCTCAACATTGGTCTA 1556
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1505 GAATGGCATTACTCTCAACCACTTCTCATCTCCATATCTTCTGATCTCAACATTGGTCTG 1564
Query 1557 CACAAGATCTCATGAAACTTTTGAAGTTCTCA--TGTCTTTGTTCCTCATTTCTTATTAT 1614
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1565 CACAAGATCTCATGAAACTTTTGAAGCTCTCACATGTCTTTGTTCCTCATTTCTTATTAT 1624
Query 1615 CTGAATCTGAGGATACAGGTTCAGGTGGCTTAATATTTATCAGTCATCGTACCAATTCTT 1674
|||| | | ||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 1625 CTGA----G-G-ATACAGGTTCAGGTGGCG-AATATTTATCAGCCATCATACCAATTCTT 1677
Query 1675 AGTTCTAGGCATAAACATCGTTCCCATATGGATTGTATTAAACTCTCAATTT 1726
|||| |||| ||||||||| ||||||| | | ||||||||||||||||
Sbjct 1678 AGTTTTAGGTATAAACATCATTCCCAT--G--T---ATTAAACTCTCAATTT 1722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85340926500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5