BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495165
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51000.1 | Symbols: | F-box and associated interaction doma... 348 6e-95
> AT5G51000.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:20742533-20743669 REVERSE LENGTH=1137
Length=1137
Score = 348 bits (188), Expect = 6e-95
Identities = 314/368 (85%), Gaps = 35/368 (10%)
Strand=Plus/Plus
Query 5 CGATGTCTGATCTTTCCGGCCGGGATTTGGTAGAAGAGATACTCTCTAGGCTTCCAATAA 64
||||||||||||||| | || |||||||||||||||||||||||||||| |||||||||
Sbjct 8 CGATGTCTGATCTTTTC--CC-GGATTTGGTAGAAGAGATACTCTCTAGGGTTCCAATAA 64
Query 65 CATCTTTGAGAGAAGTGAGATTAACTTGTAAACAATGGAATGATTATTTATCCAAAGATC 124
||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 65 CATCTTTGAAAGCAGTGAAATTAACTTGTAAACAATGGAATG---ATTTATCCAAAGATT 121
Query 125 CGAGCTTTACAAAAAACCATTATGGTAAAGAAGCCAAGGAGATT-ATG-G--C-T--T-- 175
|||||||||||||||||||||||||||||||||||||||||||| | | | | | |
Sbjct 122 CGAGCTTTACAAAAAACCATTATGGTAAAGAAGCCAAGGAGATTCAGGTGATCATGATAT 181
Query 176 GT--TT-AA----T-G---A--G--CGTCAATCTCCATAATCACAAAGACTTGGCAGATC 220
|| || || | | | | |||||||||||||||||||||||||||||||||||
Sbjct 182 GTGATTTAAAGGCTTGTTTAATGAGCGTCAATCTCCATAATCACAAAGACTTGGCAGATC 241
Query 221 CATCTCTAAAGAAAATAGGTAAACTTAATCAAGTCAAAATA-AGTCAACTACTGTTTCAT 279
||||| ||||| ||||||||||||||||||||||| ||||| | | | | ||||||||
Sbjct 242 CATCTATAAAGCAAATAGGTAAACTTAATCAAGTCGAAATAGA-T-AG-TG-TGTTTCAT 297
Query 280 TGTGATGGTTTATTGTTATTGATGTTATGCAACGCTAAGGATAAGTCTAGGCTCATGGTT 339
|||||||| ||||| |||||| ||||||||||| |||||||||| || | ||||||||||
Sbjct 298 TGTGATGGCTTATTATTATTGTTGTTATGCAACCCTAAGGATAACTCGAAGCTCATGGTT 357
Query 340 TGGAACCC 347
||||||||
Sbjct 358 TGGAACCC 365
Score = 279 bits (151), Expect = 2e-74
Identities = 260/310 (84%), Gaps = 18/310 (6%)
Strand=Plus/Plus
Query 633 TGATACATATGAGATGAAAATATGGATTACAACTAAGATTGAGCCCAATATAGTGTTGTG 692
|||| | ||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 798 TGATGCGTATGAGATGGGAATATGGATTACAACTAAGATTGAGCTCAATATAGTGTTGTG 857
Query 693 GAGCAACTTCTTAAAAGTTGATATGAGACTATTGACTGAA-AGATTTTGGTTTCCATA-T 750
|||||| ||||||||||||||||| ||| |||| || || || | ||||||| | | |
Sbjct 858 GAGCAAGTTCTTAAAAGTTGATAT--GAC-ATTGCCT-AACAGCTATTGGTTTGAAGATT 913
Query 751 TG-GATT-TTCTTCGTCGACGAGAAGAAGAAAGTAGCAATGATTTGTCATAT-AGACAGC 807
|| | || ||| ||||||||||||||||||||||||||||| || || | || |||||
Sbjct 914 TGAGTTTCTTCCTCGTCGACGAGAAGAAGAAAGTAGCAATGGTTAGTGA-ATTAGACAT- 971
Query 808 A-AAACGTGGAACAACTACAAATCTCACATGGTTGGAGAGAATGGATACTACAGAGAAGT 866
| ||||||| || ||||||||| || |||| | ||||||||||||||||||||||||||
Sbjct 972 AGAAACGTGTAAGAACTACAAAACTTACATTCTCGGAGAGAATGGATACTACAGAGAAGT 1031
Query 867 GAAATGT-AGAAAACCCGAAAG-TTAT--CTACATATGTGCTCTTATGTTCCAAGTTCGG 922
| | | | |||||| || |||| || | |||| |||||| |||||||||||||||| ||
Sbjct 1032 GGA-TCTTAGAAAATCC-AAAGGTTGTGTCTACTTATGTGTTCTTATGTTCCAAGTTTGG 1089
Query 923 TGCAAATCCA 932
||||||||||
Sbjct 1090 TGCAAATCCA 1099
Score = 156 bits (84), Expect = 4e-37
Identities = 167/204 (82%), Gaps = 18/204 (9%)
Strand=Plus/Plus
Query 373 TTTTATATGGGATACGACA-CAAACAACAACCACAAAATCTTGA-AGTTCTCGTCTTTCC 430
||||||||||||||||||| | |||||||||||||||||||| | ||| |||||| |
Sbjct 457 TTTTATATGGGATACGACAGC-AACAACAACCACAAAATCTT-ATGGTTTTCGTCTATGT 514
Query 431 ACCGTGAGTATGAAATCTACGATTTTAAGTCTAATGCATGGAGGGTT---GATGTCACTA 487
|||||||||||||||||||||||||||||||| |||| |||| |||| ||||||| ||
Sbjct 515 ACCGTGAGTATGAAATCTACGATTTTAAGTCTGATGCGTGGACGGTTATTGATGTCAATA 574
Query 488 CCGACTGTA-AT-ATATA-TCGTTGGAGT-A-C-TGTGTCCTTGAAGGGCAATGCTTACT 541
||||| | | ||||| | | | | | | | ||||||||||||||| |||| |||||
Sbjct 575 CCGACCA-AGACCATATAATAGATA-A-TCAGCGTGTGTCCTTGAAGGGTAATGTTTACT 631
Query 542 GTATTGCTCATGAAA-AGTTGAAA 564
|||||||||||| | | ||||||
Sbjct 632 TTATTGCTCATGACATA-TTGAAA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45562371329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5