BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495170
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51040.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 878 0.0
> AT5G51040.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631).
| chr5:20750660-20752023 FORWARD LENGTH=867
Length=867
Score = 878 bits (475), Expect = 0.0
Identities = 680/770 (88%), Gaps = 50/770 (6%)
Strand=Plus/Plus
Query 1 AAAAATGGCTACCCGAAGAGCTCTGATTAACGTCCACCGGATCATTCGCTCCACCGCCGT 60
||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 37 AAAAATGGCTACCCGAAAAGCTCTGATCAACGTTCACCGGATCATTCGCTCCACCGCCGT 96
Query 61 GGTAAGCC-GACGCTCCGTCGTTCCTGCCGCCGCTAACCGG---------ATTATATTCC 110
||| ||| || |||| || |||||||||||||||||||| ||||||||||
Sbjct 97 GGTTGGCCGGA-GCTCTATCATTCCTGCCGCCGCTAACCGGTCATATCCTATTATATTCC 155
Query 111 GGAATGGAGTTGATTCGGGGACGAGATTCTTCTGTGGGAACACTGCTTCTGCCCAGAATT 170
||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct 156 GGAATGGAGTTGATTTGGGGGCGAGATTCTTCTGTGAGAACACTGCGTCTGCCCAGAATT 215
Query 171 TTGATATTGATCTCTCTAACGAAGAGAATAAGAGAAGAACGATCAACAGATTGTTGTATA 230
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 TCGATATTGATCTCTCTAACGAAGAGAATAAGAGAAGAACGATCAACAGATTGTTGTATA 275
Query 231 GGAGCAAGCAACGAGGGTTTTTGGAACTTGATCTTGTTTTGGGGAATTGGGTTGAGGAGA 290
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GGAGCAAGCAAAGAGGGTTTTTGGAACTTGATCTTGTTTTGGGGAATTGGGTTGAGGAGA 335
Query 291 ATGTTAATTCCATGGACGAAAATGGTGTTAAATCCCT-A---A--T--TC-A-----T-G 335
||||||||||||||||||||||||||||||||||||| | | | || | | |
Sbjct 336 ATGTTAATTCCATGGACGAAAATGGTGTTAAATCCCTAATTCATGTCCTCAATTTGGTAG 395
Query 336 --TC-----CT--C-AATT--TGGAAAACCCTGATCTCTGGAAATGGCTAACTGAACAGG 383
|| || | |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 396 AATCTGAAGCTACCAAATTACTTGAAAACCCTGATCTCTGGAAATGGCTAACTGAACAGG 455
Query 384 AACAGCCTCCGGAGGCAGTGAGCTCTAATCCGGTGTTCTCCGCGTTACACGAGAAAGTCA 443
||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 456 AACAGCCTCCGGAAGCAGTGAGTTCAAATCCGGTGTTCTCGGCGTTACACGAGAAAGTCA 515
Query 444 TGAAGAATCTGAACAAGCATGCAGCACCAGAGACACGCGCAGCGGCTGGACAGCCCTGGG 503
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 516 TGAAGAATCTGAACAAGCATGCAGCGCCAGAGACTCGTGCAGCGGCTGGACAGCCCTGGG 575
Query 504 TCAAAGGCTGGGACGATTTCAAGAGAGGCCGTGATGCTCCTATTTCAGGGAACCAGTAAA 563
||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 576 TCAGAGGATGGGACGATTTCAAGAGAGGCCGTGATGCTCCCATTTCAGGGAATCAGTAAA 635
Query 564 CATAAACTCCGCTTTACAAAA-GTAACAAACTGAAAATACGTTATGATATGAAGTATCTG 622
|||||||||| |||| ||||| ||| |||| |||||||| ||||||||||||| |
Sbjct 636 CATAAACTCCTCTTTTCAAAAAGTATCAAAGTGAAAATAAGTTATGATATGAA--A---- 689
Query 623 AAAATAGATATTAAATCGTAGCAACCATTACTTTTACTGTTGCATTAATAAAGAACCAGG 682
| |||||| || | ||||||||||||||||| ||| ||| |||||||||||||||||
Sbjct 690 A---TAGATACCAAGTAGTAGCAACCATTACTTT-ACTATTGTATTAATAAAGAACCAGG 745
Query 683 CCGTGAAGAAGGTCCATTGACGTTGAGATAATTACAAAGTTGTGTCTTGT 732
||||||||||||||||| | |||||||||||||||| ||||||||||||
Sbjct 746 CCGTGAAGAAGGTCCATGG-CGTTGAGATAATTACAGTGTTGTGTCTTGT 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5