BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495172
Length=3038
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51060.1 | Symbols: RHD2, ATRBOHC, RBOHC | NADPH/respiratory... 4505 0.0
> AT5G51060.1 | Symbols: RHD2, ATRBOHC, RBOHC | NADPH/respiratory
burst oxidase protein D | chr5:20757284-20762431 REVERSE
LENGTH=3174
Length=3174
Score = 4505 bits (2439), Expect = 0.0
Identities = 2827/3013 (94%), Gaps = 31/3013 (1%)
Strand=Plus/Plus
Query 1 AATATTTTCCCGGAAAATTTCTCTCATTTTCTCGGG-AAAATGTT-TACTCTGCCTTTAC 58
||||||||||||||||| |||||||||||||||||| |||||||| | |||||| |||||
Sbjct 52 AATATTTTCCCGGAAAAATTCTCTCATTTTCTCGGGAAAAATGTTGT-CTCTGCGTTTAC 110
Query 59 AAAA-TTTCCTCT---GAATTAGTGAGAGATTCCAT-A-ACCAAAAATGCAAAAGATGAG 112
|||| |||||||| || |||||||||||||||| | ||| | || || ||| |
Sbjct 111 AAAATTTTCCTCTAAAAAAGTAGTGAGAGATTCCATAAGACC-ATAA-CCAGTAGA-CAA 167
Query 113 TTAATTCGCCATCATTTTCCGTTTCTTGATTT-ACTTTACCGGTG-ACTTTAGACGGCGA 170
||||| ||||||||| || ||||| ||| | | |||||| | ||||| ||||||
Sbjct 168 CAAATTCTTCATCATTTTGTGTCTCTTG-TTTGA-GATCCCGGTGAAATTTAG-CGGCGA 224
Query 171 GGAG-AAATTTTCAAGTAGAGTGT-TGAAAAAATGAATAGAGTGAGTTTTGAAGTGTCAG 228
||| ||||||||| ||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 225 CGAGAAAATTTTCAGGTAGAGTGTGTTAAAAAATGTCTAGAGTGAGTTTTGAAGTGTCAG 284
Query 229 GAGGCTATCACTCTGATGCAGAAGCCGGAAACAGCGGTCCAATGAGCGGTGGTCAATTAC 288
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 285 GAGGCTATCACTCTGATGCAGAAGCCGGAAACAGCGGACCAATGAGCGGTGGTCAATTAC 344
Query 289 CACCGATCTATAAAAAGCCGGCGAACTCCAGATTCACGGCGGAGAACAGTCAAAGAACAC 348
|||||||||||||||| |||| ||||||||||||||| || ||||||||||| |||||||
Sbjct 345 CACCGATCTATAAAAAACCGGGGAACTCCAGATTCACTGCTGAGAACAGTCAGAGAACAC 404
Query 349 GTACAGCGGCGCCATACGTGGACCTCACGGTAGATGTACAAGACGACAGAGTCTCTGTAC 408
|| | |||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 405 GT--A-CGGCACCATACGTGGACCTCACGGTAGATGTACAAGACGATACAGTCTCTGTAC 461
Query 409 ACAGCTTGAAAATGGAAGGTGGATCTAGCGTTGAAGAGAGTCCGGAGCTTACGTTGCTGA 468
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 462 ATAGCTTGAAAATGGAAGGTGGATCTAGCGTTGAAGAGAGTCCGGAGCTTACTTTGCTGA 521
Query 469 AACGGAACCGTCTTGAGAAGAAAACAACGGTGGTGAAACGTTTGGCCTCTGTTTCTCATG 528
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 522 AACGAAACCGTCTTGAGAAGAAAACAACGGTGGTGAAACGTTTGGCGTCTGTTTCTCACG 581
Query 529 AGCTTAAACGCTTGACATCGGTTTCTGGTAGTGTTGGTGGGAGAAAGCCACCTCGACCGG 588
||||||| || |||||||| ||||||||| || ||||||| |||||||| ||||||||||
Sbjct 582 AGCTTAAGCGTTTGACATCTGTTTCTGGTGGTATTGGTGGAAGAAAGCCGCCTCGACCGG 641
Query 589 CTAAGTTAGACCGGACTAAATCCGCCGCAACTCAAGCGTTGAAGGGACTTAAGTTCATTA 648
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 642 CTAAGTTAGACCGGACTAAATCCGCCGCGAGTCAAGCGTTGAAGGGACTTAAGTTCATTA 701
Query 649 GTAAAACTGACGGTGGCGCGGGCTGGAGTGCCGTGGAGAAGAGGTTTAATCAGATCACCG 708
||||||| ||||||||||| || ||| ||||||||||||| ||||||||||||| ||||
Sbjct 702 GTAAAACCGACGGTGGCGCCGGTTGGTCTGCCGTGGAGAAGCGGTTTAATCAGATTACCG 761
Query 709 CGACTACCGGTGGACTACTTGTTCGGACAAAGTTCGGTGAATGCATAGGGATGACTTCAA 768
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 762 CGACTACCGGTGGACTACTTCTTCGGACAAAGTTCGGTGAATGCATAGGAATGACTTCAA 821
Query 769 AGGATTTTGCTTTGGAACTGTTTGATGCATTGGCTAGAAGAAGGAATATAACAGGGGAAG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AGGATTTTGCTTTGGAACTGTTTGATGCATTGGCTAGAAGAAGGAATATAACAGGGGAAG 881
Query 829 TGATTGATGGAGATCAACTAAAGGAGTTTTGGGAACAAATCAATGATCAAAGTTTCGATT 888
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 882 TGATTGATGGAGATCAACTAAAGGAGTTTTGGGAACAAATTAATGATCAAAGTTTTGATT 941
Query 889 CCCGGCTTAAAACATTCTTTGACATGGTGGATAAAGATGCTGATGGTAGACTAACAGAAG 948
| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 942 CTCGGCTTAAGACATTCTTTGACATGGTGGATAAAGATGCTGATGGTAGACTTACAGAAG 1001
Query 949 ACGAAGTTAGAGAGATTATCAGTCTTAGTGCTTCTGCGAATAATCTATCTACAATCCAGA 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1002 ACGAAGTTAGAGAGATTATCAGTCTTAGTGCTTCTGCGAATAATCTATCTACAATACAGA 1061
Query 1009 AGAGAGCTGATGAATATGCAGCACTGATCATGGAAGAGCTGGATCCAGACAATATAGGAT 1068
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1062 AGAGAGCTGATGAATATGCAGCATTGATCATGGAAGAGTTGGATCCAGACAATATAGGAT 1121
Query 1069 ACATCATGTTGGAGAGTCTTGAGACTCTGCTTTTGCAAGCGGCAACACAGTCTGTGATAA 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 ACATCATGTTGGAGAGTCTTGAGACTCTGCTTTTGCAAGCGGCAACACAGTCTGTGATAA 1181
Query 1129 CAAGTACTGGGGAGAGAAAGAATCTGAGCCATATGATGAGTCAGAGGCTTAAGCCAACGT 1188
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1182 CAAGTACTGGGGAGAGAAAGAATCTGAGTCATATGATGAGTCAGAGGCTTAAGCCTACGT 1241
Query 1189 TTAACCGCAATCCATTAAAGCGATGGTACCGTGGCCTTAGATTCTTCGTGTTAGACAACT 1248
|||||||||| || || ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1242 TTAACCGCAACCCGTTGAAGCGATGGTACCGTGGTCTTAGATTCTTCTTGTTAGACAACT 1301
Query 1249 GGAAAAGATGCTGGGTTATAGTACTATGGCTCATAGTTATGGCTATCCTCTTCACCTACA 1308
|| ||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 1302 GGCAAAGATGTTGGGTTATAGTGCTATGGTTCATAGTTATGGCTATACTCTTCACCTACA 1361
Query 1309 AATACATCCAGTACAAGCGTAG-CCTGGTGTATGCAGTGATGGGTGATTGTGTATGCATG 1367
|||| ||||| |||| |||||| ||| |||||| ||||||||||||||||||| ||||||
Sbjct 1362 AATATATCCAATACAGGCGTAGCCCT-GTGTATCCAGTGATGGGTGATTGTGTGTGCATG 1420
Query 1368 GCCAAAGGTGCAGCAGAAACAGTTAAGCTGAACATGGCTTTAATTCTCTTACCTGTTTGT 1427
|| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1421 GCTAAAGGTGCTGCAGAAACAGTGAAGCTGAACATGGCTTTGATTCTCTTACCTGTTTGT 1480
Query 1428 AGAAACACCATCACATGGCTTAGGAATAAGACCAGGTTGGGT-GTTGTTGTCCCATTTGA 1486
||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||
Sbjct 1481 AGAAACACCATCACATGGCTTAGAAATAAGACCAGGTTGGGTCG-TGTTGTCCCATTTGA 1539
Query 1487 TGATAATCTCAACTTCCACAAGGTTATAGCGGTGGGGATTATAGTTGGAGTAACGATGCA 1546
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 TGACAATCTCAACTTCCACAAGGTTATAGCGGTGGGGATTATAGTTGGAGTAACGATGCA 1599
Query 1547 CGCCGGGGCACATTTGGCGTGTGACTTCCCGCGGTTACTACACGCAACTCCAGAGGCATA 1606
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1600 CGCCGGGGCACATTTAGCGTGTGATTTCCCGCGGTTACTACATGCAACTCCAGAGGCATA 1659
Query 1607 TAGGCCTTTAAGGCAGTTTTTCGGGGATGAGCAACCGAAGAGCTACTGGCATTTTGTAAA 1666
|||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1660 TAGGCCTTTAAGACAGTTTTTTGGGGATGAGCAACCAAAGAGCTACTGGCATTTTGTAAA 1719
Query 1667 CTCGGTGGAAGGTATCACCGGACTCGTAATGGTTTTGTTAATGGCAATTGCATTCACACT 1726
|||||| |||||||| |||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 1720 CTCGGTAGAAGGTATAACCGGACTTGTGATGGTTTTGTTAATGGCGATTGCATTCACACT 1779
Query 1727 AGCCACGCCATGGTTCAGAAGAGGGAAGCTAAACTATCTTCCAGGACCATTAAAGAAACT 1786
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 AGCCACGCCTTGGTTCAGAAGAGGGAAGCTAAACTATCTTCCAGGACCATTAAAGAAACT 1839
Query 1787 AGCTAGCTTCAATGCCTTCTGGTACACTCATCATTTGTTTGTCATAGTCTACATTCTTCT 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 AGCTAGCTTCAATGCCTTCTGGTACACTCATCATTTGTTTGTCATAGTCTACATTCTTCT 1899
Query 1847 TGTTGCTCATGGGTACTACTTGTATCTCACCAAAGACTGGCACAACAAGACGACATGGAT 1906
|||||||||||| ||||||||||||||||||| |||||||||||| || ||||| |||||
Sbjct 1900 TGTTGCTCATGGATACTACTTGTATCTCACCAGAGACTGGCACAATAAAACGACTTGGAT 1959
Query 1907 GTATTTGGTGGCACCAGTGATTCTATACGCGTGCGAAAGGTTGATAAGAGCATTCAGATC 1966
||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1960 GTATTTGGTGGTACCAGTGGTTCTATACGCGTGTGAAAGGTTGATAAGAGCATTCAGGTC 2019
Query 1967 GAGCATCAAGGCGGTGACTATTAGAAAAGTAGCAGTTTATCCAGGAAACGTGTTGGCAAT 2026
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 2020 GAGCATCAAGGCGGTGACTATTAGGAAAGTAGCAGTTTATCCAGGAAACGTGCTGGCAAT 2079
Query 2027 TCACTTGTCAAGACCTCAAAACTTCAAATACAAGAGCGGTCAATACATGTTTGTTAACTG 2086
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2080 TCACTTGTCAAGGCCTCAAAACTTCAAATACAAGAGTGGTCAATACATGTTTGTTAACTG 2139
Query 2087 TGCTGCTGTTTCTCCATTTGAATGGCATCCTTTTTCAATCACATCTGCACCACAAGATGA 2146
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2140 TGCTGCTGTTTCTCCATTTGAATGGCATCCATTTTCAATCACATCTGCACCACAAGATGA 2199
Query 2147 TTACCTAAGTGTTCACATTAGAGTTCTTGGGGATTGGACAAGGGCTCTCAAAGGAGTCTT 2206
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 2200 TTACCTAAGTGTTCACATTAGAGTTCTTGGGGATTGGACACGAGCTCTCAAAGGAGTCTT 2259
Query 2207 CTCTGAGGTGTGTAAGCCACCTCCGGCAGGAGTTAGTGGTCTGCTCAGAGCCGACATGTT 2266
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2260 CTCTGAGGTGTGTAAGCCACCACCGGCAGGAGTTAGTGGTCTGCTTAGAGCCGACATGTT 2319
Query 2267 GCATGGTGCAAATAATCCTGACTTCCCGAAAGTCTTGATCGATGGTCCATACGGTGCACC 2326
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2320 GCATGGTGCAAATAATCCCGACTTCCCGAAAGTCTTGATTGATGGTCCATATGGTGCACC 2379
Query 2327 AGCACAAGACTACAAGAAATACGAGGTGGTTCTACTAGTTGGTCTCGGGATTGGAGCAAC 2386
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2380 AGCACAAGACTACAAGAAGTACGAGGTGGTTCTACTAGTTGGTCTCGGGATTGGAGCCAC 2439
Query 2387 ACCAATGATCAGTATCGTCAAAGACATTGTTAACAACATCAAGGCCAAGGAACAAGCCCA 2446
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2440 ACCAATGATCAGTATCGTCAAAGACATTGTTAATAACATCAAGGCCAAGGAACAAGCCCA 2499
Query 2447 ACTCAACCGAATGGAGAATGGAACAAGCGAACCACAACGAAATAAGAAAGAGAGTTTCAG 2506
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2500 ACTAAACCGAATGGAGAATGGAACAAGCGAACCACAACGAAGTAAGAAAGAGAGTTTCAG 2559
Query 2507 GACACGTAGGGCTTACTTCTATTGGGTTACCCGTGAGCAAGGCTCTTTCGATTGGTTCAA 2566
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2560 GACCCGTAGAGCTTACTTCTATTGGGTTACGCGTGAGCAAGGCTCTTTCGATTGGTTCAA 2619
Query 2567 GAACATCATGAACGAAGTCGCGGAACGAGATACCAACCGCATCATCGAGATGCATAATTA 2626
|||||| |||||||||||||||||||||||| |||||||| ||||||| |||||||| ||
Sbjct 2620 GAACATAATGAACGAAGTCGCGGAACGAGATGCCAACCGCGTCATCGAAATGCATAACTA 2679
Query 2627 TTGTACAAGTGTCTATGAAGAAGGAGACGCTCGTTCCGCACTTATACATATGCTTCAGTC 2686
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2680 TTGTACAAGTGTCTATGAAGAAGGTGACGCTCGTTCCGCACTTATACATATGCTTCAATC 2739
Query 2687 ACTAAACCATGCAAAGAACGGCGTTGACATTGTCTCTGGAACAAGGGTTATGTCCCATTT 2746
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2740 ACTAAACCATGCAAAGAACGGCGTCGACATTGTCTCTGGAACAAGAGTTATGTCCCATTT 2799
Query 2747 CGCTAAACCTAATTGGAGAAATGTTTACAAACGTATAGCTATGGATCACCCTAACTCCAA 2806
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 2800 CGCTAAACCTAATTGGAGAAATGTTTACAAGCGTATAGCTATGGATCATCCTAACACCAA 2859
Query 2807 AGTTGGAGTGTTCTACTGTGGAGCACCAGCATTGACAAAGGAGCTAAGGCATTTAGCTTT 2866
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2860 AGTTGGAGTGTTTTACTGTGGAGCACCAGCATTGACAAAGGAGCTAAGGCATCTAGCTTT 2919
Query 2867 AGATTTCACCCACAAGACAAGCACCAGATTCTCCTTCCACaaagagaatttctaaaggag 2926
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2920 AGATTTCACCCACAAAACAAGCACCAGATTCTCCTTCCACAAAGAGAATTTCTAAAGGAC 2979
Query 2927 aaacagagttaaaaggcataagcaaaagaag-aaaagaa-gaagCATGCCCTTACTATAt 2984
| ||||||||||||||| ||| ||||| || ||||||| |||||||| ||| | |||
Sbjct 2980 ACACAGAGTTAAAAGGCCTAAACAAAAAAAATAAAAGAAAGAAGCATGAG-TTA-T-TAT 3036
Query 2985 ttttttCTTAATT 2997
|||||| |||||
Sbjct 3037 GTTTTTCGTAATT 3049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151052665373
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5