BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495179
Length=874
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51110.1 | Symbols: | Transcriptional coactivator/pterin de... 1099 0.0
> AT5G51110.1 | Symbols: | Transcriptional coactivator/pterin
dehydratase | chr5:20778132-20779464 REVERSE LENGTH=931
Length=931
Score = 1099 bits (595), Expect = 0.0
Identities = 816/915 (89%), Gaps = 45/915 (5%)
Strand=Plus/Plus
Query 1 AACTCAAG-CCAGTGGTCTGAAAATCGTTTCGCTCTCT-AAAACCAAAA-----A-C-TC 51
||||| || ||||||||||||||||||||||||||||| |||||||||| | | ||
Sbjct 1 AACTC-AGTCCAGTGGTCTGAAAATCGTTTCGCTCTCTAAAAACCAAAACTCTTATCTTC 59
Query 52 --TTC--A--AAA-CACAGGTTCCGATGGCCGCCACGTCATCATCTCCGCCGTGTAATAT 104
| | | ||| ||||| | ||||||||||||||||||||||| ||||||||||| ||
Sbjct 60 GGTACAGAGCAAATCACAGCTCCCGATGGCCGCCACGTCATCATCACCGCCGTGTAACAT 119
Query 105 CTCCGTATCCTCCCTCCTCCTCCGTCAACCTTCTTGCACAATCCTTAAAGTGTTCGGTTT 164
||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 120 CTCCGCGTCCTCCCTCCTCCTCCGTCAACCTTCTCGCTCAATCCTTAAAGTGTTCGGTTT 179
Query 165 ATTACCACCTACGAGTAGGAATACCCGTAAACTAGGCCGGTTAACGGTGACCCGGTCTAA 224
|||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 180 ATTACCACCTGTAAGTAGGAATAACCGTAAACTCGGCCGGTTAACGGTGACCCGGTCTAA 239
Query 225 TCTGGCGCAGGATTTTCTCGGTGATTTCGGAGCTCGTGACCCTTACCCGGAGGAGATAGC 284
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TCTGGCGCAGGATTTTCTTGGTGACTTCGGAGCTCGTGACCCTTACCCGGAGGAGATAGC 299
Query 285 AAGTCAATTCGGAGATAAAGTGTTGGGTTGCCAAAGCACTGAGCACAAGATTTTGATACC 344
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 GAGTCAATTCGGAGATAAAGTGTTGGGATGCCAAAGCACTGAGCACAAGATTTTGATACC 359
Query 345 AAACGCTTCTGTTTTGTCTCTCTCTCAGCTTCAGTGCTCCCCTGTTTCGCCTTCACAACC 404
|||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||
Sbjct 360 AAACGCATCTGTTTTGTCTCTCTCCCAGCTTCAGTGTTCCCCTGTTTCGTCTTCACAGCC 419
Query 405 TCCTTTGTC-GGCTGATGATGCAAGAACACTCCTCCATAAGGTTTTGGGATGGAGTATAG 463
||||||||| ||| |||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 420 TCCTTTGTCCGGC-GATGATGCCAGAACTCTCCTCCACAAGGTTTTGGGATGGAGTATAG 478
Query 464 TGGAGGACGAAGCTGGCGGTCTGAAAATAAGGTGTATGTGGAAAGTGAGGGATTCCGAGT 523
|||| | ||||| || ||||||||||||||||||||||||||||||||||||| | ||
Sbjct 479 TGGATAATGAAGCGGGTGGTCTGAAAATAAGGTGTATGTGGAAAGTGAGGGATTTTGGGT 538
Query 524 GCGGTGTTGAACTCATAAACAGGATCCAGAAGGTTGCTGAAGCTTCTGGTCATTACCCTT 583
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 GCGGTGTTGAACTCATAAACAGGATCCATAAGGTTGCTGAAGCTTCTGGTCATTACCCTT 598
Query 584 CTCTTCA-TGTGGAAAGTCCTACTCAAGTTCGAGCTGAACTATCCACCACTTCTATTGGA 642
||||||| | ||||||||||||| ||||||||||||||||||| ||| ||||||| |||
Sbjct 599 CTCTTCACT-TGGAAAGTCCTACCCAAGTTCGAGCTGAACTATTTACCTCTTCTATCGGA 657
Query 643 GGGTTGAGCATGAATGATTTCATAATGGCGGCCAAAATAGATGATATCAAGACTTCTGAT 702
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 658 GGGTTGAGCATGAATGATTTCATAATGGCGGCTAAAATAGATGATATCAAGACTTCTGAT 717
Query 703 CTTTCACCTAGGAAAAGAGCTTGGGCATGATCTT-TTT-CACTACTTTTGTAACATTTTT 760
||||| |||||||||||||||||||| ||||||| ||| || || ||||| |||||||||
Sbjct 718 CTTTCCCCTAGGAAAAGAGCTTGGGCGTGATCTTCTTTTCATTA-TTTTGGAACATTTTT 776
Query 761 GTTTGATAATAT--A-TGTA----ATGTAT--------G------ATCGATCTACATGTC 799
|||||||| ||| | |||| |||||| | |||| ||||||||||
Sbjct 777 GTTTGATAGTATGTAATGTATGTGATGTATTCTAAATTGTGTGTGATCGGTCTACATGTC 836
Query 800 AAGCTATATAGAAAACATTGTCATAATCGCATAAGAGATATCGCGCTACTTGTCTTTGAG 859
|| |||||||||| ||||||||||| ||||||||||||||| ||| || ||||||||||
Sbjct 837 GAGTTATATAGAAAGCATTGTCATAACCGCATAAGAGATATCACGCAACATGTCTTTGAG 896
Query 860 ATTCATTCATCAATC 874
|||||||||||||||
Sbjct 897 ATTCATTCATCAATC 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42648790803
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5