BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495181
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51130.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1762 0.0
> AT5G51130.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:20781816-20784071
FORWARD LENGTH=1207
Length=1207
Score = 1762 bits (954), Expect = 0.0
Identities = 1116/1188 (94%), Gaps = 35/1188 (3%)
Strand=Plus/Plus
Query 19 CATAGAAGAAACCCTAACTTCGCGAGCTTTGTTCATCAACCAACGGCGTGTGAG-AAAAC 77
|||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 26 CATAGAAGAAACCCTAACTTCGCGAGCTTTGTTCAT----CAAC-GCGTGTGAGAAAAAA 80
Query 78 ATGGGTCGGGACAACGATCagaagaagaataagaagaagagaaacacaagtaatgagaat 137
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 81 ATGGGTCGGGACAACGATCAGAAGAAGAATAAGAAGAAGAGAAACAGAAGTAATGAGAAT 140
Query 138 gagaagagtgttgagaaagTAGTCACTAATGAAGAGAAAGTCCC-A-ACA-C---AGCAG 191
||||||||||||||||||||||| ||||||||||||||||||| | ||| | |||||
Sbjct 141 GAGAAGAGTGTTGAGAAAGTAGTTGCTAATGAAGAGAAAGTCCCAACACAGCAGAAGCAG 200
Query 192 AAGCAACAACAA-G-------GG-AATTGTAATCAAAGCAAGAAGAAGAAGAATCAAGAA 242
|||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 201 AAGCAACAACAAGGACAACAAGGAAATTGTAATCAAAGCAAGAAGAAGAAGAATCAAGAA 260
Query 243 GTTTATCCATTCGGAAATTACAGAAACTACTATGGCTACCGAATAAGCCATGATACGGAT 302
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 261 GTTTATCCCTTCGGAAATTACAGAAACTACTATGGCTACCGAATAAGCAATGACACGGAT 320
Query 303 GAGGATCCTCGGCTTAAAGTCTTGAAGAAAGAATGGTTTGAAGGCAAAGACTGTCTTGAC 362
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 321 GAGGATCCTCGGCTTAAAGTGTTGAAGAAGGAATGGTTTGAAGGCAAAGACTGTCTTGAC 380
Query 363 ATTGGTTGCAACAGCGGCATTATGACTATTCATATTGCTAAAAAGTTTGGTTGCCGGAGC 422
||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 381 ATTGGCTGCAACAGCGGCATCATGACTATTCATATTGCAAAAAAGTTCGGTTGCCGGAGC 440
Query 423 ATTCTTGGAGTTGACATTGATTCAAGTCGCATTGAGGATGCTCACTGGCATCTTAGGAAG 482
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 441 ATTCTTGGAGTTGACATTGATACAAGTCGCATTGAGGATGCTCACTGGCATCTTAGGAAG 500
Query 483 TTTGTCAGAATGCAGAATTCCGCTAAGCCTAGTGAACAGAAATCTAGTTCGGAGGGTGCC 542
|||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||
Sbjct 501 TTTGTCAGAATGCAGAATTCTACTAAGCCTAGTGAAAAGAAATCTAGTTCTGAGGGTGCC 560
Query 543 GAGGGAGTACATAGATCGAAGGAGCAATCTGCTTCTCTCTCCAATGGCGAGGCAAAGACA 602
|| ||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 561 GATGGAGTACATGGATCGAAGGAGCCATCTGTTTCTCTCTCCAATGGCGAGGCAAAGGCA 620
Query 603 GATAGCGCAGAAACTAAAGACTTGTCTCAGATTGTGTCCTTTCAGAAAGAGAATTTTGTT 662
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 621 GATAGTGCAGAAACTAAAGACTTGTCTCAGATTGTGTCGTTTCAGAAAGAGAATTTTGTT 680
Query 663 CTAACCCGAAATCTTGACGAGAATCGTTATGATACAATAT-TATGTTTGAGTGTGACAAA 721
| |||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||
Sbjct 681 CAAACCCGAAATCTTGACGACAATCGTTATGATACAAT-TCTATGTTTGAGTGTGACAAA 739
Query 722 ATGGGTTCATTTGAACTGGGGTGATGATGGTTTGATCACCTTATTTTCAAAAATTTGGCG 781
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 740 ATGGGTTCATTTGAACTGGGGTGATGATGGTTTAATCACCTTATTTTCAAAGATTTGGCG 799
Query 782 TCTTCTTCAACCGGGTGGTATCTTTGTAATGGAACCTCAGCCTTGGAAATCTTATGAAAA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TCTTCTTCAACCGGGTGGTATCTTTGTAATGGAACCTCAGCCTTGGAAATCTTATGAAAA 859
Query 842 CAATCGTCGTGTCTCAGAGACAACTGCAATGAATTACCGAACGATTGTTTTACGACCAGA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 CAATCGTCGTGTCTCAGAGACAACTGCAATGAATTACCGAACGATTGTTTTACGACCAGA 919
Query 902 CCGTTTCCAAGAAATTCTTCTTGATAAGATTGGGTTTAGAACAGTGGAAGATCTTACATC 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 CCGTTTCCAAGAAATTCTTCTTGATAAGATTGGGTTTAGAACAGTGGAAGATCTTACATC 979
Query 962 AAGCTTGTCTGGTGCAAGCAAAGGGTTTGATAGACAGATTCTTGCGTTCCAGAAATGAAC 1021
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 AAGCTTGTCCGGTGCAAGCAAAGGGTTTGATAGACAGATTCTTGCGTTCCAGAAATGAAC 1039
Query 1022 ATAATAA-CCAGATGCCTCATTGAAG--GA----CAAGTTGTTGAGTTTTTGAA---C-T 1070
|||| || |||||||||||||||||| || |||||||||||||||||||| | |
Sbjct 1040 ATAACAAACCAGATGCCTCATTGAAGAAGAAGGACAAGTTGTTGAGTTTTTGAATAGCCT 1099
Query 1071 TGTGAAAATCAAATTATGACATGGTTGAACACAAGACATAAGAG-CAACTACAAGTCGCT 1129
|||||||||||||||||||||||||||||||||||| |||| || |||||| ||||||||
Sbjct 1100 TGTGAAAATCAAATTATGACATGGTTGAACACAAGATATAAAAGGCAACTAAAAGTCGCT 1159
Query 1130 TCATATCTAATACGTACTCTTTTTGCTACAGCTTAGGCTCTCTAATCT 1177
|||||||||||| ||| ||||||||||||||||||||||| |||||||
Sbjct 1160 TCATATCTAATATGTAATCTTTTTGCTACAGCTTAGGCTCACTAATCT 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57780827295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5