BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495185
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51170.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1297 0.0
AT5G51160.1 | Symbols: | Ankyrin repeat family protein | chr5:... 63.9 3e-09
> AT5G51170.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr5:20793794-20795399 REVERSE LENGTH=1039
Length=1039
Score = 1297 bits (702), Expect = 0.0
Identities = 816/871 (94%), Gaps = 8/871 (1%)
Strand=Plus/Plus
Query 24 AGAGAAGGATTCGATTTCCTTGCCTCCTCCGCCGCTTGCGCTTCTCGATTCCATTGTATC 83
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 162 AGAGAAAGATTCGATTTCCTTGCCTCCTCCACCGCTTGCGCTTCTCGATTCCATTGTATC 221
Query 84 CACAGGTTCGCTTGA---C-TC-C-ACAGAGCCTGGAGTTCGTGTAAGGAACTTCCCTCA 137
||||||||| || || | || | ||||||||||||||||||||||| ||||| |||||
Sbjct 222 CACAGGTTCACTGGATTTCTTCTCAACAGAGCCTGGAGTTCGTGTAAGAAACTTTCCTCA 281
Query 138 CGTCGATGGAAATTACGCCTTGCACGTTTACATACCTGTTTCTATACCTCCATTGCCGAA 197
||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||| ||
Sbjct 282 TGTCGATGGAAATTACGCTTTGCACGTTTACGTACCTGTTTGTATACCTCCACTGCCAAA 341
Query 198 GAAGGAGATTGTTTGTTTCTTAAAGAGGGTTGCATCAGTTGTTCCTCATCTTCATTTGGT 257
|||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 342 GAAGGAGATTGTATGTTTTTTAAAGAAGGTTGCATCAGTTGTTCCTCATCTTCATTTGGT 401
Query 258 GGAGGCTGATGTGCCACTCAGCATTCTATGCAAGGATGATCAGAAGTTTGAGCGTGCATT 317
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 402 AGAGGCTGATGTGCCACTCAGCATTCTATGCAAGGATGATCAGAAGTTTGAGCGTGCCTT 461
Query 318 GGGGAGAGAGTTCCACATTAGCTTAGGAAGAAGCGTGCCTCTGCGTGTTCATCAGATTAA 377
|||||||||||||||||| ||||||||||||| ||| || || |||||||||||||||||
Sbjct 462 GGGGAGAGAGTTCCACATAAGCTTAGGAAGAAACGTTCCACTACGTGTTCATCAGATTAA 521
Query 378 CTCGGTGGTTTCTATGCTTCGGCAAAAGCTTCAGTTGCAGAAGAGATA-TTCAATCGATT 436
||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 522 CTCGGTGATTTCTATGCTTCGGCAAAAGCTTCAGTTGCAGAAGAGATACTT-GATAGATT 580
Query 437 TTAATAAGTGGCAAGTCTTTGTGAATGACGACTGTACTCGCTCTTTCCTTTCATTGGAAA 496
| ||||||||| |||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 581 TCAATAAGTGGGAAGTCTTTGTGAATGATGACCATACTCGCTCTTTCCTTTCTTTGGAAA 640
Query 497 TCACCACTTCAGGACTATCCGAGATAAGTAAGCAAATTGATGCTGTTAATGAAGTATACA 556
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 641 TCACTACTTCAGGACTATCCGAGATAAGTAAGCAAATTGATGCTGTTAATGAAGTTTACA 700
Query 557 AGCTTCACAATCTGCCAGAGTTCTACAAGGATCCGCGGCCGCATATATCCTTGGTCTGGG 616
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 AGCTCCACAATCTGCCGGAGTTCTACAAGGATCCGCGGCCGCATATATCCTTGGTCTGGG 760
Query 617 CGTTGGGTGATATTAGAACTTCCCTAAAGGGAGCTGTTGACGGGGAACTGAGGAAGCTTA 676
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 761 CGTTGGGTGATATTAGAACTTCCCTAAAGGGAGCTGTTGACGTGGAACTTAGGAAGCTTA 820
Query 677 GAGCTGGTGGTTGTGTGCAGAATCGTATCTTCATCTCTAAGTTTGGTGGGATCGAGTGTA 736
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 821 GAGCAGGTGGTTGTGTGCAGAATCGTATCTTCACCTCTAAGTTTTGTGGGATCGAGTGTA 880
Query 737 AGATAGGAAACAAAACACACAAAATATGTAAACTCCAAGATGAATAAGAAAATCCCAAAT 796
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 881 AGATAGGAAACAAAACACACAAAATATGTAAACTCCCAGATGAATAAGAAAATCTCAAAT 940
Query 797 TTCTGTGTTTGCTGACCTATCAGGTATGCATTTGTAACGACATAGAAGCATGAGTTGATC 856
|||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 941 TTCTGTGTTTGCAGACCAATCAGGTATGCATTTGTAACGACATAGAAGGATGAGTTGATC 1000
Query 857 TGTGTTCTTGGGTATTCCACATTATATGTCT 887
||||||||||||||||||| | |||||||||
Sbjct 1001 TGTGTTCTTGGGTATTCCATAATATATGTCT 1031
> AT5G51160.1 | Symbols: | Ankyrin repeat family protein | chr5:20792211-20793841
FORWARD LENGTH=1558
Length=1558
Score = 63.9 bits (34), Expect = 3e-09
Identities = 38/40 (95%), Gaps = 0/40 (0%)
Strand=Plus/Minus
Query 848 GAGTTGATCTGTGTTCTTGGGTATTCCACATTATATGTCT 887
|||||||||||||||||||||||||||| | |||||||||
Sbjct 1558 GAGTTGATCTGTGTTCTTGGGTATTCCATAATATATGTCT 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43301834714
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5