BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495187
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51180.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2156 0.0
> AT5G51180.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:20797032-20800214 FORWARD LENGTH=1687
Length=1687
Score = 2156 bits (1167), Expect = 0.0
Identities = 1351/1437 (94%), Gaps = 24/1437 (2%)
Strand=Plus/Plus
Query 131 TTTCAAATTGGGTGTTTAG-AGCAGCG-TTGCTGCTGTAATTGAATCTGATCCGATCGAA 188
|||||||||||||| || | ||||| | ||| ||||||||||| |||||||| ||||| |
Sbjct 249 TTTCAAATTGGGTGGTTGGAAGCAGTGTTTG-TGCTGTAATTGGATCTGATCTGATCGGA 307
Query 189 TTCGATTGTAATTTGGATCCCAT-G-G-AG---GAGGA-G--AACGGTGTTTGCAAGGCG 239
|||||||| |||||||||||||| | | || ||||| | |||||| |||||||||||
Sbjct 308 TTCGATTGAAATTTGGATCCCATGGAGAAGCACGAGGAGGAAAACGGTCTTTGCAAGGCG 367
Query 240 GAATCTGTCGATGGGAGCCTTGATGTTTGGAGTTGTCAGAATTCCGATTCTTCTTCCGCT 299
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 368 GAATCTGTTGATGGTAGCCTTGATGTTTGGAGTTGTCAGAATTCTGATTCTTCTTCCGCT 427
Query 300 GATCACCTTGTCGTTATGGTCCATGGGATTTTAGGAAGTACGGATGATTGGAAGTTTGGA 359
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 428 GATCACCTTGTCGTTATGGTCCATGGGATCTTGGGAAGTACGGATGATTGGAAGTTTGGA 487
Query 360 GCTGAGCAATTCGTCAAAAAGCTGCCTGACAAAGTCTTTGTTCACTGTAGTGAAAAGAAT 419
|||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 488 GCTGAGCAGTTCGTCAAAAAGATGCCAGACAAAGTCTTTGTTCACTGTAGTGAAAAGAAT 547
Query 420 GTGTCTGCGCTTACTCTAGATGGTGTCGATGTAATGGGTGAGCGTCTAGCAGCTGAGGTT 479
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 548 GTGTCTGCGCTTACTCTAGATGGTGTGGATGTAATGGGTGAACGTCTAGCAGCTGAGGTT 607
Query 480 CTTGATATTATTCAAAGAAAACCGAATATTC-GGAAAATCTCCTTTGTTGCACATTCTTT 538
|||||||||||||| |||||||| |||| || | ||||||||||||||||||||||||||
Sbjct 608 CTTGATATTATTCAGAGAAAACCAAATA-TCTGTAAAATCTCCTTTGTTGCACATTCTTT 666
Query 539 gggggggCTTGCGGCAAGATATGCAATTGGGAAATTGTACAAGCCTGCTAATCAGAAAGA 598
||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 667 GGGAGGGCTTGCAGCAAGATATGCAATTGGGAAATTGTACAAGCCCGCTAATCAGGAAGA 726
Query 599 TGTGAAAGACTCGTTAGCCGATAGTAGTGAAGGGCCTCCCAAAGGCACGATATGTGGACT 658
||| ||||||||| |||| || |||||| ||| | ||||||||||||| |||||||||||
Sbjct 727 TGTTAAAGACTCGGTAGCGGACAGTAGTCAAGAGACTCCCAAAGGCACAATATGTGGACT 786
Query 659 TGAGGCTATGAACTTTATTACTGTAGCTACACCACATTTGGGTTCAATGGGTAATAAACA 718
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 CGAGGCTATGAATTTTATTACTGTAGCTACACCACATTTGGGTTCAATGGGTAATAAACA 846
Query 719 GGTACCGTTTCTCTTTGGCTTTTCTTCCATTGAGAAAGTTGCAGGTCTCATTATCCACTG 778
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GGTTCCGTTTCTCTTTGGTTTTTCTTCCATTGAGAAAGTTGCAGGTCTCATTATCCACTG 906
Query 779 GATATTTAAAAGAACCGGCCGTCACCTTTTCTTGAAAGATGAAGAAGAGGGAAAACCACC 838
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 907 GATATTTAAAAGAACGGGCCGTCACCTTTTCTTGAAGGATGAAGAAGAGGGAAAACCACC 966
Query 839 CTTGCTTCGACGCATGGTGGAAGATACTGATGATTGTCATTTCATATCTGCACTGCGAGC 898
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 967 ATTGCTTCGACGCATGGTGGAAGATACCGATGATTGTCATTTCATATCTGCACTGCGAGC 1026
Query 899 CTTCAAAAGGCGGGTGGCTTATTCAAATGTGGGCCACGATCACGTTGTTGGCTGGAAGAC 958
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1027 CTTCAAAAGGCGGGTGGCTTATTCAAATGTGGGCCATGATCACGTTGTTGGCTGGAAGAC 1086
Query 959 GGCATCTATCAGACGTGACAGTGAATTGCCTAAGTGGGAAGATTCTCTGAATGAGAAGTA 1018
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GGCATCCATTAGACGTGACAGTGAATTGCCTAAGTGGGAAGATTCTCTGAATGAGAAGTA 1146
Query 1019 TCCTCACATTGTTTACGAAGAACTCTGCAAGGCATGTGATGCT-GAGGACATACCAGAAG 1077
|||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1147 TCCTCATATTGTTTACGAAGAACTCTGCAAGGCATGTGAT-ATGGAGGACATACCAGAAG 1205
Query 1078 GCGAGAATCATTCAGATGACATAGAAGAAGAAATGATCAAAGGCCTCTCCACAGTCTCAT 1137
|||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1206 GCGAGAATCATTCAGACGACATAGAAGAAGAAATGATCAAAGGCCTCTCCTCTGTCTCAT 1265
Query 1138 GGGAAAAAGTTGATGTTAGCTTTCACAGTAGCAGGCAGAGGTTTGCTGCCCATAGTGTTA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GGGAAAAAGTTGATGTTAGCTTTCACAGTAGCAGGCAGAGGTTTGCTGCCCATAGTGTTA 1325
Query 1198 TACAGGTTAAAAATGAAGATATGCATATAGAAGGAGCAGATGTCATAGAGCATATTATCG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1326 TACAGGTTAAAAATGAAGATATGCATATAGAAGGAGCAGATGTCATAGAGCATATCATCG 1385
Query 1258 ATCATTTCCATGCTTAAATCAGTAAACTTTTCATCACCCAAGAGTCTGGGACACGATAAT 1317
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 1386 ATCATTTCCATGCTTAAATCAGTAAACTTTTCATCACCCAAGAGTTTGGGACACGACA-T 1444
Query 1318 TAAAGACTCAAGTTTCTTATAGTAAAGCAACA-TTTTCCA-CTGGACGTTTATATGTCAC 1375
||| ||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||||
Sbjct 1445 TAAGGACTCAAATTTCTTATAGTAGAGCAACAATTTTCCAGCTGGACGTTTATATGTCAC 1504
Query 1376 GTAGTTGTTTACACTATAAAATCAGCTCATTTTCTCTGTAATTGCACAGGTAGCAAGATG 1435
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct 1505 GTAGTTGTTTACACTATAAAATCATCTCATTTTGTCTGTAATTGCACAGGTAGCAAGACG 1564
Query 1436 TCGATTATGACCAATGTATTTGATACTTGGTATTAGCAGCAAAGCAAATCTTGTTCAATT 1495
|| ||||||||||||||||||||||| ||||||||||| || |||||| | ||||||||
Sbjct 1565 TCAATTATGACCAATGTATTTGATACATGGTATTAGCA--AA-GCAAAT-T-GTTCAATT 1619
Query 1496 CAATTGTATCATGTATTCACATATATTTTGCAATGAAAGCTTTGTGCCTATATATTT 1552
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1620 CAATTGTATCATGTATTCACAAATATTTTGCAATGGAAGCTTTGTGCCTATATATTT 1676
Score = 124 bits (67), Expect = 2e-27
Identities = 81/87 (93%), Gaps = 4/87 (5%)
Strand=Plus/Plus
Query 50 GTGTTTGT-TTCCTTCCGTTTCCTTCTCTGGCAAGTCTGCTTCGTACGT--GCTCTCTTC 106
|||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 116 GTGTTT-TCTTCCTTCCGTTTCCTTCTCTGGCAAGTCTGCTTCGTACGTACTCTCTCTTC 174
Query 107 ATTTCCACTTCACACTTTCTACTTTTT 133
||| |||||||||||||||||||||||
Sbjct 175 ATTCCCACTTCACACTTTCTACTTTTT 201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76706432760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5