BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495189
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51190.1 | Symbols: | Integrase-type DNA-binding superfamil... 1042 0.0
> AT5G51190.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:20800584-20801416 REVERSE LENGTH=833
Length=833
Score = 1042 bits (564), Expect = 0.0
Identities = 724/802 (90%), Gaps = 8/802 (1%)
Strand=Plus/Plus
Query 1 TCATCTATGGCTTCTTCAAATCAACAACAACAAGAACAAGACCAATCAGCTTTAGATCTC 60
|||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||
Sbjct 38 TCATCTATGGCTTCTTCACATCAACAACAGCAAGAACAAGACCAGTCAGCTTTAGATCTC 97
Query 61 ATAACCCAACACCTTCTTACCGATTTCCCTTCCTTAGACACCTTTGTCTCCACCATCCAC 120
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 98 ATAACCCAACACCTTCTTACTGATTTCCCTTCCTTAGACACCTTTGCCTCCACCATCCAC 157
Query 121 CACTGCACCACCTCAACTCTAAGCCAACGGAAGCCACCTCTTGCCACTATAGCAGTTCCT 180
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 158 CACTGCACCACCTCAACTCTAAGCCAACGCAAACCACCTCTTGCCACTATAGCAGTTCCT 217
Query 181 ACTACTGCACCAGTGGTTCAAGAGGATGATCAAAGGCATTACAGAGGCGTGAGGCGAAGA 240
||||||||||| |||||||||||| ||||||||||||||||||||||||| ||| |||||
Sbjct 218 ACTACTGCACCGGTGGTTCAAGAGAATGATCAAAGGCATTACAGAGGCGTCAGGAGAAGA 277
Query 241 CCGTGGGGCAAGTATGCGGCTGAGATCAGAGACCCAAACAAGAAAGGTGTTCGTGTCTGG 300
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 CCATGGGGTAAGTATGCGGCTGAGATCAGAGACCCAAACAAGAAAGGTGTTCGTGTCTGG 337
Query 301 TTAGGGACTTTTGACACAGCCATGGAAGCTGCAAGGGGTTACGACAAGGCTGCTTTTAAA 360
||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 338 TTAGGCACTTTTGACACAGCCATGGAAGCTGCAAGAGGTTATGACAAGGCAGCTTTTAAA 397
Query 361 CTACGTGGAAGCAAAGCCATTCTTAACTTTCCACTTGAAGCAGGCAAGCACGAGGACTTA 420
||||| ||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 398 CTACGAGGAAGCAAAGCTATTCTTAACTTCCCACTTGAAGCAGGAAAGCATGAGGACTTG 457
Query 421 GGAGACAATAACAAGACTGTGTCTTTGAAAGCAAAGAGGAAAAGACAAGTAACGGAGGAT 480
|||||||| || |||||| | ||||| |||||||||||||| ||||| || |||||||||
Sbjct 458 GGAGACAACAAGAAGACTATTTCTTTAAAAGCAAAGAGGAAGAGACAGGTGACGGAGGAT 517
Query 481 GTAAGCCACCTAAGCAGCAATAAAGCTGTGAAGAGGGAAGAAACTCAGGCTCAGGCTGAG 540
| |||||| || | |||| ||||||||| |||||||||||| |||||| |||||||||
Sbjct 518 GAAAGCCAGCTGATCAGCCGTAAAGCTGTTAAGAGGGAAGAAGCTCAGGTTCAGGCTGAT 577
Query 541 GTTTGCCCGTTAACACCGTCAAGTTGGATGGGGTTTTGGGACGGAGAAGACAGTAAAGAG 600
| ||| || ||||| || |||||||||| ||||||||||||||||| ||||||||||||
Sbjct 578 GCTTGTCCATTAACGCCATCAAGTTGGAAGGGGTTTTGGGACGGAGCAGACAGTAAAGAC 637
Query 601 ATGGGGATATTCTCCGTGCCTCCATTATCTCCTTATCTATCTCTTGGACACTCCCACCTC 660
||||| ||||| |||||||||| |||||||||| || ||||||||||||||| || |||
Sbjct 638 ATGGGAATATTTTCCGTGCCTCTGTTATCTCCTTGTCCATCTCTTGGACACTCTCAACTC 697
Query 661 GTGGTTA-TGTAAGCTTCTGAGAGTCAAACTGGGAACATTCCAAGCAACTTTGGATTGTG 719
|| |||| | |||||||| ||| |||||||||| || | || || || || |||||||
Sbjct 698 GTAGTTACT-TAAGCTTCAGAGGGTCAAACTGGAAAAAATC-AA-CA--TT-GGATTGTT 751
Query 720 TTGAAAGCTTCTAGATTAGCTGATTGTAAAAAT-TGTTTCCCTATATTCATTGATTCATC 778
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||| ||
Sbjct 752 TTCAAAGCTTCTAGATTAGCTGATTGTAAAAAAATGTTTTACTATATTCATTCATTCTTC 811
Query 779 TTAAATGCAATTCTTTCTACCC 800
||||||||||||||||||||||
Sbjct 812 TTAAATGCAATTCTTTCTACCC 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38931463925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5