BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495191
Length=695
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51210.1 | Symbols: OLEO3 | oleosin3 | chr5:20820101-2082094... 819 0.0
> AT5G51210.1 | Symbols: OLEO3 | oleosin3 | chr5:20820101-20820944
FORWARD LENGTH=734
Length=734
Score = 819 bits (443), Expect = 0.0
Identities = 517/553 (93%), Gaps = 4/553 (1%)
Strand=Plus/Plus
Query 1 ACATCACTACCTATTCTCTGCTAATTTCTACCATTTGTGTTGGAGGGAT-TACAAT-A-A 57
|||||||||||| |||||||||||||||||| ||||||||||||||||| || || | |
Sbjct 1 ACATCACTACCTTTTCTCTGCTAATTTCTACTATTTGTGTTGGAGGGATATATTATAATA 60
Query 58 AAAAGAATCAATGGCGGACCAAACAAGAACCCATCTCGAGATGATAAGCCGAGACAGTAC 117
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 AAAAGAACCAATGGCGGACCAAACAAGAACCCATCACGAGATGATAAGCCGAGACAGTAC 120
Query 118 CCAAGAGTCCCATCCGAAGGAGAGGCAGATGGTGAAGGCAGCAACCGCTGTCACAGCCGG 177
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAAGAGGCCCATCCGAAGGCCAGGCAGATGGTGAAGGCAGCAACCGCTGTCACAGCCGG 180
Query 178 TGGATCCCTCCTTGTCCTTTCCGGCTTAACGCTCGCCGGAACAGTGATCGCACTCACGGT 237
||||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 181 TGGATCCCTACTTGTCCTCTCCGGCTTAACACTCGCTGGAACAGTCATCGCACTCACGGT 240
Query 238 AGCCACTCCTCTCCTCGTCATCTTCAGCCCCGTCTTGGTTCCAGCAGTGATCACCGTCGC 297
|| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 241 GGCTACTCCTCTCCTCGTCATCTTCAGCCCCGTCTTGGTTCCAGCAGTGGTAACCGTTGC 300
Query 298 TCTCATCATCACCGGATTTCTTGCATCTGGTGGCTTTGGAATAGCCGCCATTACCGCCTT 357
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 TCTCATCATTACCGGATTCCTTGCATCCGGTGGCTTTGGAATAGCCGCCATTACCGCCTT 360
Query 358 CTCTTGGGTCTACAGGCACTTGGCGGGATCTGGATCGGAGAAGATAGAGAATGCTCGGAT 417
||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 361 CTCTTGGCTCTACAGGCACATGACGGGATCTGGATCGGATAAGATAGAGAATGCTCGGAT 420
Query 418 GAAGGTGGGGAGCAGAGTGCAGGATACCAAGTATGGGCAGCACAACATTGGAGTCCAACA 477
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GAAGGTTGGAAGCAGAGTGCAGGATACTAAGTATGGGCAGCACAACATTGGAGTCCAACA 480
Query 478 CCAACAAGCTTCTTAAAATTCAAAGGCTAAAATCGATTTCCCACATTAAATTGTCATCCA 537
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 481 CCAACAAGTTTCTTAAAATTCAAAGGCTAAAAACGATTTCC-ACATTAAATTGTCATCCA 539
Query 538 TCGTTTGATCTCT 550
||||| |||||||
Sbjct 540 TCGTTAGATCTCT 552
Score = 167 bits (90), Expect = 1e-40
Identities = 130/147 (88%), Gaps = 11/147 (7%)
Strand=Plus/Plus
Query 550 TATAATAACATGCAATGTATGATGTAATCTTGTTGTTGGTT-TGCGAGTAATGTTTTGAT 608
|||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 597 TATAATAACATGCAATGTATGATGTAATCTTGTTGTTG-TTGTATGAGTAATGTTTTGAT 655
Query 609 CCTTCTATTCTATGTGAGCGGAAATCTTCATATAGACACTTAGTGGCATTGGTACATTAC 668
|||||||| | | |||||||||||||||||||||| | || ||||||||||||||
Sbjct 656 CCTTCTATGC---G--AGCGGAAATCTTCATATAGACAGT--GT--CATTGGTACATTAC 706
Query 669 ACAAATCTTCAGAATCACCTTCTACGC 695
||||||||||| |||| ||||||||||
Sbjct 707 ACAAATCTTCATAATCTCCTTCTACGC 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33656878490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5