BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495194
Length=2377
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51230.1 | Symbols: EMF2, VEF2, CYR1, AtEMF2 | VEFS-Box of p... 3664 0.0
> AT5G51230.1 | Symbols: EMF2, VEF2, CYR1, AtEMF2 | VEFS-Box of
polycomb protein | chr5:20823736-20829564 FORWARD LENGTH=2427
Length=2427
Score = 3664 bits (1984), Expect = 0.0
Identities = 2278/2413 (94%), Gaps = 48/2413 (2%)
Strand=Plus/Plus
Query 1 CTCTTTCTCTCTCTCAAGCTGTCACAGTCTCCTCTGTATTCGCGTGAAGAAGATAATTTC 60
|||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||
Sbjct 17 CTCTTTCTCTCTCTCAAGCTGTCAAAGTCACCTCTGTATTCGCGT---GAAGATAATTTC 73
Query 61 TCACGATTAGGGttttttttttttttttCCTGGGTTAACTGTTCCATCTCCATTCTAATC 120
|||| ||||||| |||||||||| || ||| |||||||||||||||||||| ||||||
Sbjct 74 TCACAATTAGGG---TTTTTTTTTTCTT-CTGAGTTAACTGTTCCATCTCCATCCTAATC 129
Query 121 TTCA----------G--TTCGAGATCTCTGTCAAATTGTAGAATCTGTTCTCCATCTAAT 168
|||| | ||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 130 TTCACCTTCTCCTTGATTTCGAGATCTCTGTCAATTTGTTGAATCTGTTCTTTATCTAAT 189
Query 169 TAGTTCAAGTCCGAGACTTTGGAT-TATGTTGCAGGTTTTGTAGCTGAAGCAAA-TTGTA 226
||| |||| |||||| |||| | | || ||| || |||||||||||||||||| |||||
Sbjct 190 TAGCTCAACTCCGAGTCTTT-GCTGGATTTTGAAGCTTTTGTAGCTGAAGCAAATTTGTA 248
Query 227 ATCTGTGATGGTGTATGTAGC-GATTCTGGGTATGGTATTGTACTCTAGGATCTCGTAGC 285
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 249 ATCTGTGATGGTGTATGCA-CTGATTCTGGGTATGGTATTGTACTCTAGGATCTCGTAGC 307
Query 286 CAGAATGCCAGGCATTCCTCTTGTCAGTCGTGAAACCTCTTCTTGTTCAAGAAGCACAGA 345
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 308 GAGAATGCCAGGCATTCCTCTTGTTAGTCGTGAAACCTCTTCTTGTTCAAGAAGCACAGA 367
Query 346 GCAGATGTGCCATGAAGACTCCCGTGTGCGTTTTTCGGAAGAGGAGGAGATTGCTGCTGA 405
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 368 GCAGATGTGCCATGAAGACTCCCGTCTGCGTATTTCGGAAGAGGAGGAGATTGCTGCTGA 427
Query 406 AGAGAGCTTGGCTGCTTATTGCAAGCCTGTTGAACTCTACAATATCCTTCAGCGCCGTGC 465
||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 428 AGAGAGCTTGGCTGCCTATTGCAAGCCTGTTGAACTCTACAATATCATTCAACGCCGTGC 487
Query 466 TATTAGGAATCCCTTGTTTCTTCAGCGATGTTTGCATTATAAGATTGAGGCAAAACATAA 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TATTAGGAATCCCTTGTTTCTTCAGCGATGTTTGCATTATAAGATTGAGGCAAAACATAA 547
Query 526 AAGGAGAATACAAATGACCGTGTTCCTCTCGGG-GACTATAGATGCTGGGGTTCAAACTC 584
|||||||||||||||||| || ||||||||||| | |||||||||||||||| |||||||
Sbjct 548 AAGGAGAATACAAATGACTGTATTCCTCTCGGGCG-CTATAGATGCTGGGGTACAAACTC 606
Query 585 AAAAATTATTCCCTCTGTATATTTTGTTGGCAAGACTCGTTTCTCCTAAGCCTGTCGCCG 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 607 AAAAATTATTCCCTCTGTATATTTTGTTGGCAAGACTCGTTTCTCCTAAGCCTGTCGCTG 666
Query 645 AGTATTCTGCAGTATATAGGTTCAGTCGAGCATGTATCCTAACTGGTGGCCTGGGGGATG 704
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 667 AGTATTCTGCAGTATATAGGTTCAGTCGAGCATGTATCCTAACTGGTGGATTGGGGGTTG 726
Query 705 ACGGAGTTAGTCAAGCCCAAGCCAACTTTCTTCTCCCTGAAATGAATAGACTCGCGTTGG 764
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 727 ATGGAGTTAGTCAAGCCCAAGCCAACTTTCTTCTCCCTGATATGAATAGACTCGCATTGG 786
Query 765 AGGCTAAATCAGGATCACTCGCTATCTTGTTTATCAGCTTTGCTGGTGCGCAAAATTCAC 824
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 787 AGGCAAAATCAGGATCACTCGCTATCTTGTTTATCAGCTTTGCTGGTGCGCAAAATTCTC 846
Query 825 AATTTGGCATTGATTCTGGCAAGATTCATTCAGGAAATATAGGAGGACATTGTTTATGGA 884
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 AATTTGGCATTGATTCAGGCAAGATTCATTCAGGAAATATAGGAGGACATTGTTTATGGA 906
Query 885 GCAAAATACCCT-TGCAATCGCTGTATGCGTCGTGGCATAAATCTCCAAACATGGACTTG 943
|||||||| ||| ||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 907 GCAAAATA-CCTCTGCAATCACTGTATGCGTCGTGGCAGAAATCACCAAACATGGACTTG 965
Query 944 GGACAGAGAGTAGACTCAGTCTCCCTTGTTGAAATGCAGCCTTGCTTCATAAAGCTAAAG 1003
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 966 GGACAGAGAGTAGACACAGTCTCTCTTGTTGAAATGCAGCCTTGCTTCATAAAGCTAAAG 1025
Query 1004 TCCATGAGTGAGGAAAAGTGTGTCTCGATTCAGGTGCCCAGCAATCCCCTCACCTCGAGC 1063
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1026 TCCATGAGTGAGGAAAAGTGTGTCTCGATTCAGGTGCCCAGCAATCCACTCACCTCGAGC 1085
Query 1064 TCGCCGCAGCAAGTGCAAGTCACCATATCTGCAGAAGAAGTTGGGGCAACAGAAAAATCT 1123
|| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1086 TCTCCGCAGCAAGTGCAAGTCACCATATCTGCAGAAGAAGTTGGGTCAACGGAAAAATCT 1145
Query 1124 CCTTATAGTTCATTTTCATATAATGACATCTCTTCCTCTTCATTGTTGCAAATTATCAGG 1183
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1146 CCTTATAGTTCATTTTCATATAATGACATCTCTTCCTCTTCCTTGTTGCAAATTATCAGG 1205
Query 1184 TTGAGAACACGAAATGTAGTTTTCAACTACAGATACTATAACAACAAATTGCAGAGGACT 1243
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1206 TTGAGAACAGGAAATGTAGTTTTCAACTACAGATACTATAACAACAAATTGCAGAAGACT 1265
Query 1244 GAAGTAACTGAAGACTTTTCTTGTCCATTCTGCTTAGTAAAATGTGCCAGTTTCAAGGGC 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GAAGTAACTGAAGACTTTTCTTGTCCATTCTGCTTAGTAAAATGTGCCAGTTTCAAGGGC 1325
Query 1304 CTGAGATATCACTTGCCATCAACCCATGATCTTTTCAATTTCGAGTTTTGGGTAACTGAA 1363
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1326 CTGAGATATCACTTGCCATCAACCCACGATCTCCTCAATTTCGAGTTTTGGGTAACTGAA 1385
Query 1364 GAATATCAGGCTGTAAATGTCTCCCTCAAGACTGAGACAATGATGTCCGAGATTAATGAG 1423
|||| |||||| |||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct 1386 GAATTTCAGGCGGTAAATGTCTCCCTCAAGACTGAGACAATGATATCCAAGGTTAATGAG 1445
Query 1424 GATGACGTTGACCCAAAGCAGCAAACTTTCtttttttC----A-------C-G--G-AGG 1468
|||||||||||||||||||||||||||||||||||||| | | | | |||
Sbjct 1446 GATGACGTTGACCCAAAGCAGCAAACTTTCTTTTTTTCTTCCAAAAAATTCAGACGGAGG 1505
Query 1469 AGGCAAAAGAGTCAGGTACGGAGCTCAAGGCAAGGGCCTCATCTTGGCTTAGGTTGCGAG 1528
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1506 AGGCAAAAGAGTCAGGTACGGAGCTCAAGGCAAGGGCCTCATCTTGGATTAGGTTGCGAG 1565
Query 1529 GTGCTAGATAAAACTGATGATGCTCATTCTGTTAGAAGTGAGAAGAGCCGAATACCACCT 1588
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 GTGCTAGATAAGACTGATGATGCTCATTCTGTTAGAAGTGAGAAGAGCCGAATACCACCT 1625
Query 1589 GGAAAGCATTACGAAAGAATTGGGGGTGCTGAGTCTGGTCAAAGAGTTCCTCCTGGCACG 1648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626 GGAAAGCATTACGAAAGAATTGGGGGTGCTGAGTCTGGTCAAAGAGTTCCTCCTGGCACG 1685
Query 1649 AGTCCTGCAGACGTGCAATCATGCGGGGATCCAGATTATGTGCAGTCGATAGCTGGAAGT 1708
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1686 AGTCCTGCAGACGTGCAATCATGTGGGGATCCAGATTATGTGCAGTCGATAGCTGGAAGT 1745
Query 1709 ACAATGTTGCAGTTTGCAAAAACGAGGAAACTATCTATAGAACGGTCGGACTTGAGGAAC 1768
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1746 ACAATGTTGCAGTTTGCAAAAACGAGGAAAATATCTATAGAACGGTCGGACTTGAGGAAC 1805
Query 1769 CGAAGCCTCCTTCAGAAGAGACAGTTCTTCCACTCTCATCGAGCTCAGCCCATGGCTCTA 1828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 CGAAGCCTCCTTCAGAAGAGACAGTTCTTCCACTCTCATCGAGCTCAGCCCATGGCTCTA 1865
Query 1829 GAACAAGTACTTTCGGACCGGGATAGTGAAGATGAAGTTGATGATGATGTGGCAGATTTT 1888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1866 GAACAAGTACTTTCGGACCGGGATAGTGAAGATGAAGTTGATGATGATGTGGCAGATTTT 1925
Query 1889 GAAGATAGAAGGATGCTTGATGATTTTGTTGATGTGACTAAAGATGAGAAGCAGATGATG 1948
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1926 GAAGATAGAAGGATGCTCGATGATTTCGTTGATGTGACTAAAGATGAGAAACAGATGATG 1985
Query 1949 CACATGTGGAACTCGTTTGTGAGGAAGCAGCGAGTATTAGCAGATGGTCACATTCCATGG 2008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1986 CACATGTGGAACTCGTTTGTGAGGAAGCAGCGAGTATTAGCAGATGGTCACATTCCATGG 2045
Query 2009 GCATGTGAGGCATTCTCAAGATTGCATGGACCCATCATGGTTCGAACACCACACTTGATT 2068
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 2046 GCATGCGAGGCATTCTCAAGATTGCACGGACCCATCATGGTTCGAACACCGCACTTGATT 2105
Query 2069 TGGTGCTGGAGAGTGTTTATGGTGAAACTGTGGAACCACGGCCTTCTTGACGCCCGAACC 2128
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2106 TGGTGCTGGAGAGTGTTTATGGTGAAACTGTGGAACCACGGTCTTCTTGATGCCCGAACC 2165
Query 2129 ATGAACAACTGTAATACCTTTCTCGAACAGCTCCAAATTTGAAAACCCAAGAAACCATTA 2188
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2166 ATGAACAACTGTAATACCTTTCTCGAACAGCTCCAAATTTGAAAACCCAAGAAATCATTA 2225
Query 2189 ATTTAAGTAGAGGAACaaaaaaaaGGGGAGAGAAGAAGAGTTTTGGGGTCTCATT-AACT 2247
||||||||||| |||||| ||| | ||||||||||||||||||| ||||||| ||||
Sbjct 2226 ATTTAAGTAGAAAAACAAAGAAA-GACAAGAGAAGAAGAGTTTTGGGTTCTCATTTAACT 2284
Query 2248 ACTTTTGGTGTTTTAAGAGA--GAGGAGCATATTTATGCATGAATTTGTCCTC-TCtttt 2304
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 2285 ACTTTTGGTGTTTTAAGAGAAAGAGGAGCATATTTATGCATGAATTTGTCCTCATCTTTT 2344
Query 2305 ttttttttAATTTTATTTATAAATGTGTACATTGGCTCATCTTCGACGCTTGTTTTTTGA 2364
|||||||| ||||| ||||||||||||||||||||| ||||| |||||||||| || ||
Sbjct 2345 TTTTTTTTTTTTTTAATTATAAATGTGTACATTGGCTTATCTTTGACGCTTGTTCTTCGA 2404
Query 2365 GTACTGCTTTATA 2377
||| |||||||||
Sbjct 2405 GTAATGCTTTATA 2417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118021481295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5