BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495196
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51260.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 1618 0.0
AT4G25150.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 606 1e-172
> AT5G51260.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr5:20832025-20833782 REVERSE LENGTH=1287
Length=1287
Score = 1618 bits (876), Expect = 0.0
Identities = 1039/1113 (93%), Gaps = 30/1113 (3%)
Strand=Plus/Plus
Query 86 TCTTCAACATCTGAATATAAAACCCTAATTTTGATTCAAGTTTCTCAATTTGTGTGTATT 145
|||||||||||| ||||| |||||||||||||||||| |||||||||||| ||||| |||
Sbjct 176 TCTTCAACATCTCAATAT-AAACCCTAATTTTGATTCTAGTTTCTCAATTGGTGTGAATT 234
Query 146 CTCAGAAATTCAGAAATCCC-AA---AG------T-T-GGtt---ttttttttCGATTGA 190
|||||||||||||||| ||| || | | | ||| |||||||| ||||||
Sbjct 235 CTCAGAAATTCAGAAAACCCTAATTTCGTTTTTTTCTCTGTTCGGTTTTTTTTTGATTGA 294
Query 191 TTCGATTTCCGGTGATTCTCCGATGAGGATTTA-CGTGATTTTCCTTGTGGTGATCTCCT 249
|||||||||| ||||||||||||||||||||| | |||||||||| |||||| | ||||
Sbjct 295 TTCGATTTCCTTTGATTCTCCGATGAGGATTTATC-TGATTTTCCTCGTGGTGGTTTCCT 353
Query 250 TATTTGCCTCCGCGTTTTCCGATTCGATTCTCGAGTACCCGTCGGAAATCGAGAGTCGAC 309
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TATTTACCTCCGCGTTTTCCGATTCGATTCTCGAGTACCCGTCGGAAATCGAGAGTCGAC 413
Query 310 ACAAGAAAGCTGCCGATGAAGATGTCAATTTGCATTGTACGACCTGGAGATTCGCGGCGG 369
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 ACAAGAAAGCTGCCGAAGAAGATGTCAATTTGCATTGTACGACCTGGAGATTCGCGGCGG 473
Query 370 AGATGAACAATCTCGCGCCGTGGAAAACAATTCCGGTGGAGTGTGCCGATTACGTGAAGG 429
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 474 AGATGAACAATCTCGCGCCGTGGAAAACAATCCCGGTGGAATGTGCCGATTACGTGAAGG 533
Query 430 ATTACGTGATGGGTAAAGGCTACCTCACCGATTTGGAGAGAGTCTCTGAAGAAGCTTTGA 489
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ACTATGTGATGGGTAAAGGCTACCTCACCGATTTGGAGAGAGTCTCTGAAGAAGCTTTGA 593
Query 490 TCTTCGCGAGCAGCGTCGAATTCTCCGGCGATGGCAAAGATATTTGGATTTTCGATATCG 549
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TCTTCGCGAGAAGCATCGAATTCTCCGGCGATGGCAAAGATATTTGGATTTTCGATATCG 653
Query 550 ATGAGACTCTCTTATCCAATCTTCCATATTACATTGACCATGGCTTTGGGTTGGAGCTTT 609
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 654 ATGAGACTCTCTTATCCAATCTTCCTTATTACATTGATCATGGTTTTGGGTTGGAGCTTT 713
Query 610 TTGATCATTCGGAGTTTGATAAGTGGGTAGAGAAAGGAGTGGCACCAGCTATAGCACCAA 669
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 714 TTGATCATTCGGAGTTTGATAAGTGGGTAGAGAGAGGAGTGGCACCAGCCATAGCACCAA 773
Query 670 GCTTGAAGCTTTACCAGAGAGTGATAGATTTAGGATACAAAGTTTTCTTGCTTACAGGGA 729
|||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 774 GCTTGAAGCTTTACCAAAGAGTGTTAGATTTGGGATACAAAGTTTTCTTGCTTACAGGGA 833
Query 730 GGAAAGAGAGCCACAGGCTTGTCACTGTTGAAAACCTGATCAATGCTGGTTTCCAGAACT 789
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 834 GGAAAGAGAGTCACAGGCTTGTCACTGTTGAAAATCTCATCAATGCTGGTTTCCAGAACT 893
Query 790 GGGACAAGCTTATTCTCAGATCTCCAGACGAACAGCACAAAATGGCGACACTATACAAAT 849
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 894 GGGACAAGCTTATTCTCAGATCTCCAGAGGAACAGCACAAAATGGCGACACTATACAAAT 953
Query 850 CTGAGAAGAGAGATGAGATGGTGAAAGATGGATACAGGATTAGAGGCAATTCAGGTGATC 909
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 954 CTGAGAAGAGAGATGAGATGGTGAAAGAGGGATATAGGATTAGAGGCAATTCAGGTGATC 1013
Query 910 AATGGAGTGATTTGTTGGGTACCTCCATGTCTCAACGATCTTTCAAACTCGCCAATCCAA 969
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1014 AATGGAGTGATTTGTTGGGTACCTCCATGTCTCAACGATCTTTCAAACTCGCAAATCCAA 1073
Query 970 TGTATTATATCCCCTGAAGAACTTTATTTGACGAC--ATATAAAAGGTTTCGAAAATCGT 1027
||||||||||||||||||| |||||||||||||| |||||||| |||| ||||||||
Sbjct 1074 TGTATTATATCCCCTGAAGGGCTTTATTTGACGACCTATATAAAACATTTCAAAAATCGT 1133
Query 1028 ATATACTTACTA---GAGCAATCAAAGTGTTTTTAAAGTTCGATTGCCTTTGCTTGTAAC 1084
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1134 ATATACTTACTATTAGAGCAATCAAAGTGTTTTTAAAGTTGGATTGCCTTTGCTTGTAAC 1193
Query 1085 TTGTCAAGCTATTAAATGTACTAATAAGAGAGAATGCTCTGTTTTATACAGAGTAGATAA 1144
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1194 TTGTCAAGCTACTAAATGTACTAATAACAGAGAATGCTCTGTTTTATACAGAGTAGATA- 1252
Query 1145 GTATA--GTACT-C--GTTTTAACtt-tttttt 1171
||||| ||||| | |||||||||| ||||||
Sbjct 1253 GTATATAGTACTACTCGTTTTAACTTCTTTTTT 1285
Score = 86.1 bits (46), Expect = 7e-16
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1 TCAAAGCTTTCTTCTTTCGTACGATATTCCATTAATCCAATTTGAAACTTTC 52
||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 55 TCAAAGCTTTCTTCTTTTGTACGTTATTCCATTAATCCAATTTGAAACTTTC 106
> AT4G25150.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr4:12901534-12903125 REVERSE LENGTH=1228
Length=1228
Score = 606 bits (328), Expect = 1e-172
Identities = 560/670 (84%), Gaps = 24/670 (4%)
Strand=Plus/Plus
Query 331 ATGTCAATTTGCATTGTACGACCTGGAGATTCGCGGCGGAGATGAACAATCTCGCGCCGT 390
|||||||| | ||||| |||| |||||||||||||||||||| ||||||||||| || |
Sbjct 371 ATGTCAATCTACATTGCACGAGCTGGAGATTCGCGGCGGAGACAAACAATCTCGCTCCAT 430
Query 391 GGAAAACAATTCC-GGTGGAGTGTGCCGATTACGTGAAGGATTACGTGATGGGTAAAGGC 449
||||||| ||||| | | || || |||||||||||||| |||||| |||||||| ||||
Sbjct 431 GGAAAACCATTCCAGCT-GAATGCGCCGATTACGTGAAAGATTACCTGATGGGTGAAGGT 489
Query 450 TACCTCACCGATTTGGAGAGAGTCTCTGAAGAAGCTTTGATCTT-CGCGAGCAGCGTCGA 508
||| || |||| ||||||||||||| ||||||||| | | || |||||||||| ||||
Sbjct 490 TACGTCGTCGATGTGGAGAGAGTCTCCGAAGAAGCTAAGGT-TTACGCGAGCAGCTTCGA 548
Query 509 ATTCT-CCGGCGATGGCAAAGATATTTGGATTTTCGATATCGATGAGAC-TCTCTTATCC 566
| ||| ||| || || ||||| ||||||||||||||||| |||||||| | | || ||
Sbjct 549 A-TCTAACGGTGACGGGAAAGACATTTGGATTTTCGATATTGATGAGACGT-TATTGTCG 606
Query 567 AATCTTCCATATTACATTGACCATGGCTT-TGGGTTGG-AGCTTTTTGATCATTCGGAGT 624
|||||||| |||||||| || || || || |||||||| || ||||||||||||| |||
Sbjct 607 AATCTTCCTTATTACATGGAACACGG-TTGTGGGTTGGAAG-TTTTTGATCATTCAAAGT 664
Query 625 TTGATAAGTGGGTAGAGAAA-GGAGTGGCACCAGCTATAGCACCAAGCTTGAAGCTTTAC 683
|||||| ||||||||||||| ||| | ||||| |||||||||||||||||||||||||||
Sbjct 665 TTGATATGTGGGTAGAGAAAGGGA-TAGCACCTGCTATAGCACCAAGCTTGAAGCTTTAC 723
Query 684 CAGAGAG-TGATAGATTTAGGATACAAAGTTTTCTTGCTTACAGGGAGGAAAGAGAGCCA 742
|| | || | ||| |||| || ||||||||| |||||||||||||| | | ||||| |||
Sbjct 724 CAAA-AGGTTATACATTTGGGGTACAAAGTTATCTTGCTTACAGGGCGTAGAGAGAACCA 782
Query 743 CAGGCTTGTCACTGTTGAAAACCTGATCAATGCTGGTTTCCAGAACTGGGACAAGCTTAT 802
| || || ||||||| ||||||||| |||||| |||||||| |||||||||||||||||
Sbjct 783 CCGGGTTATCACTGTCGAAAACCTGCGCAATGCCGGTTTCCATAACTGGGACAAGCTTAT 842
Query 803 TCTCAGATC-TCCAGACGAACAGCACAAAATGGCGAC-ACTATACAAATCTGAGAAGAGA 860
||| ||||| | || || | | |||||| ||||| | | ||||| || |||||||||
Sbjct 843 TCTGAGATCGTTG-GATGATCGGAACAAAACAGCGACCA-TGTACAAGTCAGAGAAGAGA 900
Query 861 GATGAGATGGTGAAAGATGGATACAGGATTAGAGGCAATTCAGGTGATCAATGGAGTGAT 920
|| |||||||||||||| || || ||||| ||||||||||||||||| ||||||||||||
Sbjct 901 GAGGAGATGGTGAAAGAAGGGTATAGGATCAGAGGCAATTCAGGTGACCAATGGAGTGAT 960
Query 921 TTGTTGGGTACCTCCA-TGTCTCAACGATCTTTCAAACTCGCCAA-TCCAATGTATTATA 978
||||||||| | | || |||| || |||| |||||||| |||| ||||||||||||||
Sbjct 961 TTGTTGGGTTC-TGCAATGTCAGAAAGATCCTTCAAACTT-CCAAATCCAATGTATTATA 1018
Query 979 TCCCCTGAAG 988
||||||||||
Sbjct 1019 TCCCCTGAAG 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57479624025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5