BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495203
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51310.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1421 0.0
> AT5G51310.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:20852854-20854718
REVERSE LENGTH=978
Length=978
Score = 1421 bits (769), Expect = 0.0
Identities = 917/985 (93%), Gaps = 23/985 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCTGGAACTTCCGGTGTTTGACATTTCAAAGCCTCTAAGCGAGTCATCGTTGACG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTCTCTGGAACTTCCGGTGTTTGACATTTCAAAGCCTCTAAGCGAGTCATCATTGACG 60
Query 61 TCACTACAAGATGCGTGTAAAGAGTGGGGTTTCTTCTACGTGACCAACCATGGTGTCTCC 120
|||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||
Sbjct 61 TCACTACAAGATGCGTGTAAGGAGTGGGGTTTCTTCTACGTAACCAACCACGGCGTCTCC 120
Query 121 GGCGACATGTACAAGAAACTCCGGCGATTATCCGGGGGTGTTTTTGAGCTCGAAGATGAG 180
||||||||||||||||||||||| |||| || || ||||| ||||| |||||||||
Sbjct 121 CGCGACATGTACAAGAAACTCCGGAGATTCTCAACCGGAGTTTTCGAGCTAGAAGATGAG 180
Query 181 GAGAAAATGAAGATGGGAGCGTCTAATTACACTCCCCGTTTCATCGCTTCACCTTTCTTT 240
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 181 GAGAAAATGAAAATGGGAGCGTCTAATTACACTCCCCGTTTCATCGCATCGCCTTTCTTT 240
Query 241 GAAAGCCTTCGTGTCTCCGGTCCTGATTTCTATGCCTCGGCCAAGTCTTCCGTTTATGCT 300
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 241 GAAAGCCTTCGTGTCTCCGGTCCCGATTTCTATGCCTCGGCCAAGTCTTCCGTTGATGCT 300
Query 301 TTTTCAGACCAAGCTACCGATGAAGAGTTCAGTGCGTTGATGAAAGAATATGGAGAAAAG 360
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TTTTCCGACCAAGCTACCGATGAAGAGTTCAGTGGGTTGATGAAAGAATATGGAGAAAAG 360
Query 361 ATGACGGAACTATGCGAGAAGATAATGAAAGCAATCCTCTCTAGCTTTGGAGACGATCTT 420
|||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 ATGACGAAACTATGTGAGAAGATAATGAAAGCAATCCTCTCTAGCTTCGGAGACGATCTT 420
Query 421 CATCACAAATATTACGAATCTGAGTTTGGAAACTGTCATGGCTACTTCAGGATCAACAAC 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CATCACAAGTATTACGAATCTGAGTTTGGAAACTGTCATGGCTACTTCAGGATCAACAAC 480
Query 481 TACACAATCCCTTCAGAACAAGAAGATGATCATGATCACAACGACGATGATGATCAAGAT 540
||||||||||||||||| ||||||||||||||| ||||||| | |||||| ||||||
Sbjct 481 TACACAATCCCTTCAGACCAAGAAGATGATCAT---CACAACG--G-TGATGAGCAAGAT 534
Query 541 TTGATCGAAGGGCTTGGAATGCACACTGACATGAGTTGCATCACGATCGTTGATCAAGAT 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 535 TTGATCGAAGGGCTAGGAATGCACACTGACATGAGTTGCATCACGATCGTTGACCAAGAT 594
Query 601 GACATCGGAGGTCTTCAAGTCAGAACCAGAGATGGGATTGGTCTGATGGATATTAACCCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 595 GACATCGGAGGTCTTCAAGTCAGAACCAGAGATGGGATTGGTCTGATGGATATCAACCCT 654
Query 661 AAAGACGAAGCTCTCGTGGTCAACGTCGGAGATCTATTGCATGCATGGACTAATGGACGG 720
||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 655 AAAGATGAAGCACTCGTTGTCAACGTCGGAGATCTATTGCATGCATGGACCAATGGACGG 714
Query 721 TTGAGATCGTCTCAACACAGAGTTATCTTGAAACGACGTGGTTTCGTCGGTAATAGATTC 780
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 715 CTGAGATCGTCTCAACACAGAGTTATCTTGAAACGACGTGGTTTCGTTGGTAATAGATTC 774
Query 781 TCACTTGCttttttttGGTG-TTTCGACGATGGGAAAGTCGTGTTTGCCCCTGATGAAGT 839
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 775 TCACTTGCTTTTTTTTGGTGCTTT-GACGATGGGAAAGTCGTGTTTGCCCCTGATGAAGT 833
Query 840 GGTGGGAGGTTGTGAGGGTGTGAGGATATTTCGGTCATTTAAATGTGGGGATTATTTGAG 899
|| ||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 834 CGTCGGAGGTTGTGAGGGTATGAGGGTATTTCGATCATTTAAATGTGGGGATTATTTGAG 893
Query 900 GTTCAGAGAGA--A--G-----------TTCGAGAAGGTTGGGGACACGGTCGAAGACTT 944
||| ||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 894 GTTTAGAGAGAGTAATGAGAAAGGGAAGTTCGAGAAGGTTGGGGACACGGTCGAAGACTT 953
Query 945 TGCACGAATTGAAGACTATCGTTAA 969
|||||||||||||||| |||||||
Sbjct 954 TGCACGAATTGAAGACCGTCGTTAA 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5