BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495204
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51330.1 | Symbols: SWI1, DYAD | SWITCH1 | chr5:20858706-208... 1559 0.0
> AT5G51330.1 | Symbols: SWI1, DYAD | SWITCH1 | chr5:20858706-20861711
REVERSE LENGTH=1997
Length=1997
Score = 1559 bits (844), Expect = 0.0
Identities = 943/990 (95%), Gaps = 10/990 (1%)
Strand=Plus/Plus
Query 829 AGGTCAGAGTTGAGGTCAGAAGCAAGGGAACGCTGATTGGTGACACGGGTCTATTAGATC 888
||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||
Sbjct 1004 AGGCCAGAGTTGAGGTCAGAAGCAA-GGAA-GCTGATTGGTGACACAGGTCTATTGGATC 1061
Query 889 ATCTGCTTAAGCACATGGCTAGTAAGGTGGCTCCTGGAGGTCAAGATAGGTTTAGGAGAA 948
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1062 ATCTGCTTAAGCACATGGCTGGTAAGGTGGCTCCTGGAGGTCAAGATAGGTTTATGAGAA 1121
Query 949 AGCACAATGCAGATGGGGCAATGGAGTATTGGTTGGAGAGTTCTGATTTGATTCACATAA 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 AGCACAATGCAGATGGGGCAATGGAGTATTGGTTGGAGAGTTCTGATTTGATTCACATAA 1181
Query 1009 GGAAAGAAGCAGGAGTTGAAGATCCTTACTGGACTCCTCCACCTGGTTGGAAGCTTGGTG 1068
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 GGAAAGAAGCAGGAGTTAAAGATCCTTACTGGACTCCTCCACCTGGTTGGAAGCTTGGTG 1241
Query 1069 ACAACCCTACTCAAGATCCTGTCTGCGCCGGAGAAATCCGTGACATCAGAGAAGAATTAG 1128
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1242 ACAACCCTTCTCAAGATCCTGTCTGCGCTGGAGAAATCCGTGACATCAGAGAAGAATTAG 1301
Query 1129 CTAGCCTGAAAAGAGGATTGGAGAAACTCGCATCAAAGAAGGAAGAGGAGGAGCTTGTTA 1188
||||||||||||||| |||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 1302 CTAGCCTGAAAAGAGAATTGAAGAAACTTGCGTCAAAGAAGGAAGAGGAGGAGCTTGTTA 1361
Query 1189 TCGTGACTACACCTAATTCTTGTGTTACTAGTCAGAATGATAATCTGATGACTCCAGCAA 1248
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TCATGACTACGCCTAATTCTTGTGTTACTAGTCAGAATGATAATCTGATGACTCCAGCAA 1421
Query 1249 AGGAAATCTACGCTGATCTGCT-AAAGAAGAAATACAAAATTGAGGACCAGCTAGTGATA 1307
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1422 AGGAAATCTACGCTGATCTGCTGAAA-AAGAAATACAAAATTGAGGACCAGCTAGTGATT 1480
Query 1308 ATTGGAGAAACCTTGCGTGACATGGAGGAAGGCATGGGATACCTAAAGAAAACAGTGGAC 1367
|||||||||||||||||| | |||||||||| |||||||| || |||||||||||||||
Sbjct 1481 ATTGGAGAAACCTTGCGTAAAATGGAGGAAGACATGGGATGGCTTAAGAAAACAGTGGAC 1540
Query 1368 GAGAACTATCCTAGAAAGCCAGACTCAACAGAGACACCTTTGCTACTAGAGGATTCACCA 1427
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 GAGAACTATCCTAAAAAGCCAGACTCAACAGAGACACCTTTGCTACTAGAGGATTCACCA 1600
Query 1428 CCAATACAGACACTAGAAGGAGAAGTGAAGGTGGTGAACAAGGGTAACCAAATCACAGAG 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 CCAATACAGACACTAGAAGGAGAAGTGAAGGTGGTGAACAAGGGTAACCAAATCACAGAG 1660
Query 1488 TCACCTCAAAACAGAGAAAAAGGCAAG-AAGCATGATCAACAAGAACGATCACCACTTTC 1546
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct 1661 TCACCTCAAAACAGAGAAAAAGG-AAGGAAGCATGATCAACAAGAAAGATCACCACTTTC 1719
Query 1547 ACTTATAAGCAACACTGGTTTCAGAATCTGCAGGCCTGTGGGGATTTTCGCATGGCCCAA 1606
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1720 ACTAATAAGCAACACTGGTTTCAGAATCTGCAGGCCTGTGGGGATGTTCGCATGGCCCCA 1779
Query 1607 ATTGTCTGCTCTTGCTGCTGCTACTGATACTAATGCTTCTTCGCTAAGTCACCGACCAGC 1666
|||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 1780 ATTGCCTGCTCTTGCTGCTGCTACTGATACTAATGCTTCTTCGCCAAGTCACAGACAAGC 1839
Query 1667 CTACCCATCTCCTTGTCCAGTCAAGCCACTTGCAGCTAAGCGTCCTCTCGGCTTGACATT 1726
||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1840 CTACCCATCCCCTTTTCCAGTCAAGCCACTTGCAGCTAAGCGTCCTCTTGGCTTGACGTT 1899
Query 1727 TCCCTTCACCATCATACCCGAAGAAGCTCCCACA-AATCTATTCAACGTTTGAAGTTGCC 1785
|||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| |
Sbjct 1900 TCCCTTCACCATCATACCCGAAGAAGCTCCCA-AGAATCTCTTCAACGTTTGAAGTTGTC 1958
Query 1786 A-TCGCAAACTGATGCATCAGATCTTACTT 1814
| | | ||||||||||||||||||||||||
Sbjct 1959 ACTGG-AAACTGATGCATCAGATCTTACTT 1987
Score = 1234 bits (668), Expect = 0.0
Identities = 782/836 (94%), Gaps = 11/836 (1%)
Strand=Plus/Plus
Query 1 CGAGAGCAAAAATCATGAGTGGAACGATGTTCGTGAAACGGAATCCGATTAGAGAAACCT 60
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 18 CGAGAGCAAAAATCATGAGTAGTACGATGTTCGTGAAACGGAATCCGATTAGAGAAACCA 77
Query 61 CCGCCGGGAAAAACTCTCCGCCGTCGTCACCGACTTTGAATGTTGCAGTTGCGCATATAA 120
|||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 78 CCGCCGGGAAAATCTCTTCGCCGTCGTCACCGACTTTGAATGTTGCAGTCGCGCATATAA 137
Query 121 GAGTTGGATCTTATTACGAAATCGATTCTTCGATTCTTCCTCACAGATCGCCGGAGAATC 180
||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct 138 GAGCTGGATCTTATTACGAAATCGATGCTTCGATTCTTCCTCAGAGATCGCCGGAAAATC 197
Query 181 TTAAATCGATTAGAGTCATCATGGTTG-GCAAAATCACGGCGAGCGATGTGTCTCTCCGA 239
||||||||||||||||| |||||| || |||||||||||||||| || |||||||||||
Sbjct 198 TTAAATCGATTAGAGTCGTCATGG-TGAGCAAAATCACGGCGAGTGACGTGTCTCTCCGG 256
Query 240 TACCCAAGCATGTGTTCACTCCGATCGCATTTCGATTACAGTAGAATGAACCGGAATAAA 299
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 257 TACCCAAGCATGTTTTCACTCCGATCGCATTTCGATTACAGTAGGATGAACCGGAATAAA 316
Query 300 CCGTTGAAGAAGAGGAGTGGCGGTGGTCTTCTTCCTGTTTTTGACGAGAGTCATGTGATA 359
||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 317 CCGATGAAGAAGAGGAGTGGTGGTGGTCTTCTTCCTGTTTTCGACGAGAGTCATGTGATG 376
Query 360 GCTTCGGAGCTAGCTGGAGACTTGCTTTATAGAAGAATCGCACCTCATGAAGTTTCTATG 419
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 377 GCTTCGGAGCTAGCTGGAGACTTGCTTTACAGAAGAATCGCACCTCATGAACTTTCTATG 436
Query 420 AATAGAAATTCCTGGAGTTTCTGGGTTTCTGGTTCTTCTCGCAGGAACAGATTTCCACGA 479
||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 437 AATAGAAATTCCTGGGGTTTCTGGGTTTCTAGTTCTTCTCGCAGGAACAAATTTCCAAGA 496
Query 480 AGGGAGATGGTTTCTCAACCGGCGTACAATACTAGCCTCTGTCGCGCGGCTTCACCGGAG 539
|||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 497 AGGGAGGTGGTTTCTCAACCGGCGTACAATACTCGTCTCTGTCGCGCTGCTTCACCGGAG 556
Query 540 GGAAAGTGCTGGTCTGAGCTGAAATCGGGAGGGATGATTAAGTGGGGAAGGAGATTGCGT 599
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 557 GGAAAGTGCTCGTCTGAGCTGAAATCGGGAGGGATGATCAAGTGGGGAAGGAGATTGCGT 616
Query 600 GTGCAGTATCAGAGTCGGCATATTGATTCTAAGAAGAATAAGGAAGGTGAGGAGAGTTCT 659
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 617 GTGCAGTATCAGAGTCGGCATATTGATACTAGGAAGAATAAGGAAGGTGAGGAGAGTTCT 676
Query 660 AGAGTGAAGGATGAAGAGGCTTGC--A-AAGAAGAGATAGAGAAAGAGGATGATGATGAT 716
||||||||||||| | | | || | | |||||||||| |||||||| || |||||||||
Sbjct 677 AGAGTGAAGGATG-A-A-GTTTACAAAGAAGAAGAGATGGAGAAAGAAGAGGATGATGAT 733
Query 717 GATGGGAATGAAACAGAAGGCACTAAACAAGAAGATGCAAAGGAGATAACTGATGGAAAT 776
||||||||||||| || |||||||||||||| || ||||||||||||||| ||||||||
Sbjct 734 GATGGGAATGAAATAGGAGGCACTAAACAAG-AG--GCAAAGGAGATAACTAATGGAAAT 790
Query 777 CGTAAGAGAAAGCTGATTGAATCAAGTACTGAGAGACTCGCTCAGAAGGCTAAGGT 832
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 791 CGTAAGAGAAAGCTGATTGAATCAAGTACTGAGAGACTCGCTCAGAAAGCTAAGGT 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89758574460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5