BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495205
Length=2624
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 4111 0.0
> AT5G51340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:20862943-20867370 FORWARD LENGTH=2719
Length=2719
Score = 4111 bits (2226), Expect = 0.0
Identities = 2498/2628 (95%), Gaps = 24/2628 (1%)
Strand=Plus/Plus
Query 1 AGTGCTTTGTCGTCTTCCACTGTCTCCGGTCCGGACCAAAGAGCTCAAGTCACGCAGCTA 60
||||||||||||||||| || | | | |||||||||||||||||||||||||||||||
Sbjct 1 AGTGCTTTGTCGTCTTCTACCG--T-C--TCCGGACCAAAGAGCTCAAGTCACGCAGCTA 55
Query 61 ACAAAGTACATAtttttttCCCTTGTTTCGATTGCAAAAGCGCATAAGCTTCGTACTTGT 120
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 ACAAAGTACAGA--TTTTTCCCTTGTTTCGATTGCAAAAGCGCATAAGCTTCGTACTTG- 112
Query 121 CCTGTTGTCCAATCTGAAGTCAAAACAAAAACACTGGTCAAACAAAGAGTCGACGAGCCC 180
| | |||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 113 -C------CAAATCTGAAGTCAAACCAAATACACTGGTCAAACAAAAAGTCGACGAGCCC 165
Query 181 AAGCAAGATTCCGATAGCAAAACCAGTCGGACCCATTATTTCAACGAGCCACACTGGTTA 240
| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 166 ---C-AGATTCCGATAGCAAAACCAGTCGGACCCAGGATTTCGATGAGCCACACTGGTTA 221
Query 241 AATTCTTACCCAATTCACGGCCTAGGTCACCGAAAACGTGACTTC-TTGACATGTTTTGG 299
||| |||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||
Sbjct 222 GCTTCCGACCCAATTCACGTCCTAGGTCACCGAGAACGTGACTTCTTTG-CATGTTTTGG 280
Query 300 ATTTATTGATTCTTATGAGTTTTATCTTTGGCTTCTCTCTCGATCAGTAGCAGAAAACTA 359
||| |||| || ||||||||||| ||||||||||||||||| |||||||||||| |||
Sbjct 281 TTTTGTTGAGTCGGATGAGTTTTATTTTTGGCTTCTCTCTCGACCAGTAGCAGAAAGCTA 340
Query 360 TGGAAGGTGCTGCAGTGGCGGAAGGGCTGTGGGGATTAGCGGATCACCACCAGAAGCTTG 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TGGAAGGTGCTGCTGTGGCGGAAGGGCTGTGGGGATTAGCGGATCACCACCAGAAGCTTG 400
Query 420 GTGACATCGGAAAAACCATAAAGTGCTTGGAAGCCATCTGCCAGAGTCAAATCTCTTTCC 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GTGAGATCGGAAAAACCATAAAGTGCTTGGAAGCCATCTGCCAGAGTCAAATCTCTTTCC 460
Query 480 TTCCTCTTGTTGAAGTCAAGTCTCGCCTCCGTGTCTCTGCTCTTTTACTCCGTTACTCTC 539
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 461 TTCCTCTTGTTGAAGTCAAGTCTCGCCTCCGTTTGGCTGCTCTTTTACTCCGTTACTCTC 520
Query 540 ACAATGTCAGTCAGGCCAAGTCCCATCTCGAGCGCTCCCTTCTTCTCCTTAAGTCTATTC 599
||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 521 ACAATGTCAACCATGCCAAGTCCCATCTCGAGCGCTCTCTTCTTCTCCTTAAGTCTATTC 580
Query 600 CTTCTTCCTACGACCTCAAATTTCGGACTTATAGCCTGCTCAGCCACTGTTATCACCTCC 659
|||| |||||||| |||||||||| || ||||||| ||||||||||||||||||||||||
Sbjct 581 CTTCCTCCTACGATCTCAAATTTCAGAATTATAGCTTGCTCAGCCACTGTTATCACCTCC 640
Query 660 TTGCTTCATTTCCTCCGCAACGCAACCTTCTCCTCAAGGCTCTCGAACTCGCATCTTCTG 719
|||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 641 TTGCTTCATTCCCTCCTCAACGCAACCTTCTTGTCAAGGCTCTCGAACTCGCATCTTCTG 700
Query 720 TCCCTCAGGATGTTTCTGCCTACCTCTGGTCTTGCAATTTCAACTCTCAGCTCGCTAACA 779
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 701 TCCCTCAGGATATTTCTGCGTACCTCTGGTCTTGCAATTTCAACTCTCAACTCGCTAACA 760
Query 780 CGTTCATTATCCAAGCCGATTTTCCTTCTTCTCTCTCCGCCCTCGAGTCTGGTTTTCTCT 839
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 761 CGTTCATTATCCAAGCCGATTTTCCTTCTTCTCTCTCCGCTCTCGAGTCTGGTTTTCTCT 820
Query 840 CTGCTTCACACATATGTTTTCCTGAGCTCCAGATGTTCTTCACAGCTTCTATGCTTCACG 899
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 821 CTGCTTCACACATATGTTTTCCTGAGCTCCAGATGTTCTTCACAGCTTCAATGCTTCACG 880
Query 900 TTCATATCATGCAATGGACTGATGATTATTCAGTGGAAAAGGCTGTCCAGCGATGCGATG 959
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 881 TTCATATCATGCAATGGACTGATGATTATTCAGTGGAAAAAGCTGTCCAGCGATGCGATG 940
Query 960 AGATCTGGCAGACCATTTCTTCAGACAAGACTGATCGCTGCCCTGGTTTGTTCTTCTACA 1019
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 941 AGATCTGGCAGACCATTTCTTCAGACAAGACTGATCGCTGCCCCGGTTTGTTCTTCTACA 1000
Query 1020 ATGAGATGTTGCATGTTTTCTATCGCCTCAGGCTATGCGATTATAAGAACGCTCAGCATC 1079
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1001 ATGAGATGTTGCATGTTTTCTATCGCCTCAGGCTCTGCGATTATAAGAACGCTCAGCATC 1060
Query 1080 ATGTCGACCGCTTGGACCAGGCCATGAATGCTCATTCGCATAAAATGCAGGAGATTCAGC 1139
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1061 ATGTCGACCGCTTGGACCAGGCAATGAATGCTCATTCGCATAAAATGCAGGAGATTCAGC 1120
Query 1140 AACTACTGGATGAGCTCAGTTCGTTAAATCTTAGTCTCTCCCGTTACGATCTTCCCTCCA 1199
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1121 AACTTCTGGATGAGCTCAGTTCGTTAAATCTTAGTCTCTCCCGTTACGACCTTCCCTCCA 1180
Query 1200 GAGAAAGATCGGCCCTCTCCGCAAGACAATCTCAGCTTCAAGATCGTGTAAACGCAGTAT 1259
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1181 GAGAAAGATCGGCCCTCTCAGCAAGACAATCTCAGCTTCAAGATCGTGTAAACGCATTAT 1240
Query 1260 CTCCATCTTCTACCACTGATAACTCTCTGGAGCCCGCATACTTTGGCAACATAGATCGTG 1319
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 CTCCATCTTCTAGCACTGTTAACTCTCTGGAGCCCGCATACTTTGGCAACATAGATCGTG 1300
Query 1320 GATGGACAGAGAGGCTACTGCTTTCACCATCTCCAATTGATGGAGAGTGGCTACCAAAAA 1379
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1301 GATGGACAGAGAAGCTACTGCTTTCACCATCTCCAATTGATGGAGAATGGCTACCAAAAA 1360
Query 1380 GTGCCATCTATGCTTTGGTCCATCTTATGGTTGTCATATCAGGACGTCCAAAGGGACTCT 1439
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1361 GTGCCATCGATGCTTTGGTCCATCTTATGGTTGTCATATCGGGACGTCCAAAGGGACTCT 1420
Query 1440 TTAAAGAGTGTTCAAAACGTATCGAGTCTGGATTGCAGATCATTCAAGATGAACTGATCA 1499
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1421 TTAAAGAGTGTTCAAAACGTATCGAGTCTGGACTGCAGATCATTCAAGATGAACTGATCA 1480
Query 1500 AGCTTGGAATTACTGACGAAGTTAGAGAAGCTGATTTGAGGCACACAGCTATCTGGATGT 1559
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1481 AGCTTGGAATTACTGACGAAGTTAGAGAGGCTGATTTGCGGCACACAGCTATCTGGATGT 1540
Query 1560 CTAGGGTTTTTCTTATGCTACAGATGCAGTTTCTTGAGAATAGAGTGGCTTTGGAACTTA 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 CTAGGGTTTTTCTTATGCTACAGATGCAGTTTCTTGAGAATAGAGTGGCTTTGGAACTTA 1600
Query 1620 CAAGGTCTGATTTTGTCGAAGCTGAAGAGGCTTTGGTTGAGATGAAAAATTGGTTTACTC 1679
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1601 CAAGGTCTGATTATGTCGAAGCTGAAGAGGCTTTGGTTGATATGAAAAATTGGTTTACAC 1660
Query 1680 GATTTCCAACGATTTTGCAAGCTTCTGAGTGTGTGATTGAGATGCTCAGGGGGCAATATT 1739
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1661 GATTTCCAACGATTTTACAAGCTTCTGAGTGTATGATTGAGATGCTCAGGGGGCAATATT 1720
Query 1740 CTCATTCTGTTGGTTGCTATAGTGAAGCTGCTTTCCATTGTATTGAAGCGACCAAGTTGA 1799
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1721 CTCATTCTGTTGGTTGCTACAGCGAAGCTGCTTTCCATTGTATTGAAGCGACCAAGTTGA 1780
Query 1800 CAGAGAGTATATCAATGCAAGCTTCGTGTCAAGCATTTGCAGCTGTTTCTTACCTTACTA 1859
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1781 CAGAGAGTATTTCAATGCAAGCTTCGTGTCAAGCTTTTGCAGCTGTTTCTTACCTTACTA 1840
Query 1860 TTGGAGATGCTGAATCATCATCTAAGGCACTTGATTTAATTGGACCACTCAATGGAATGA 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 TTGGAGATGCTGAATCATCATCTAAGGCACTTGATTTAATTGGACCACTCAATGGAATGA 1900
Query 1920 CGAATTCACTATCTGGTGTTCGAGAGGAAGCTAGTATTCTCTTTGCTTATGGTCTCCTCT 1979
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1901 CGAATTCACTATCTGGTGTTCGAGAGGAAGCTAGTATTCTCTTTGCTTACGGTCTTCTCT 1960
Query 1980 TGATGAAGCAACGAGATCTACAGGAAGCAAGAAACCGTCTTGCCAAGGGTTTGCAAATCG 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1961 TGATGAAGCAACGAGATCTACAGGAAGCAAGAAACCGTCTTGCCAAGGGTTTGCAGATCG 2020
Query 2040 CGCACAATCATATGGGTAACCTGCAGCTAGTTGCACAGTATTTGACACTCCTGGGAAATT 2099
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2021 CTCATAATCATATGGGTAACCTGCAGCTAGTTGCACAGTATTTGACACTCCTGGGAAATT 2080
Query 2100 TAGCTCTCTCCTTGCATGACACCGTACAAGCCAGAGAGATTTTGCGTTCCTCTCTTACAC 2159
||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 2081 TAGCTCTTTCCTTGCACGACACCGTACAAGCCAGGGAGATCCTGCGTTCCTCTCTTACAC 2140
Query 2160 TTGCAAAGAAACTCTATGATATCCCAACTCAGCTATGGGTTCTATCCATCTTCACAGCTC 2219
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2141 TTGCAAAGAAACTTTATGATATCCCAACTCAGCTATGGGTTCTATCCATCTTCACAGCTC 2200
Query 2220 TGTATCAGCAGTTGGGTGAGAAAGGGAACGAGATGGAGAACGAAGAATTCCGGAAGAAGA 2279
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2201 TGTATCAGCAGTTGGGTGAGAAAGGCAACGAGATGGAGAACGAAGAATTCCGGAAGAAGA 2260
Query 2280 AATGGGATGAGTTGCAGAGTAGACTTGCTGAAGCACGTGGATCAATTCACCACATTGAAC 2339
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 2261 AATGGGATGAGTTGCAGAGTAGACTTGCTGAAGCGCGAGGATCAATTCATCACATTGAAC 2320
Query 2340 TGGTTGCGAAAGCTAGGATAGAATTGCATCAGGTCGACGA---TGCACAAGAACAGTCAC 2396
|||||||||||||||||||||||||| ||||| ||||| | | |||||||||||||||
Sbjct 2321 TGGTTGCGAAAGCTAGGATAGAATTGTATCAGATCGACAACAATCCACAAGAACAGTCAC 2380
Query 2397 TAGTAGCATCTGGGCAATCATTGCAAGCGAATCTAGACATCCCAGAGTCTGTTGGTATAG 2456
|||||||||||| ||||||| |||||| |||||| || || |||||||||||||||||||
Sbjct 2381 TAGTAGCATCTGCGCAATCAATGCAAGGGAATCTGGATATTCCAGAGTCTGTTGGTATAG 2440
Query 2457 AAGGTCCATCACCTGCTCCATCATCTTCAAGGCTGGTTGGTTTAGACACCGGAAAAAGAT 2516
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2441 AAGGTCCATCACCTGCTCCATCATCTTCAAGGCTCGTTGGTTTAGACACCGGAAAAAGAT 2500
Query 2517 GGGGAAAACGAAGGGTATAACTTATAAAGACAGAGAATACCTACGATTTTTGTATTAAGT 2576
|||||||||||||| | |||||| |||||||||||| |||||||||||||||||||||||
Sbjct 2501 GGGGAAAACGAAGGATGTAACTTTTAAAGACAGAGAGTACCTACGATTTTTGTATTAAGT 2560
Query 2577 GTGAGTTGTGTAGATGTGTTGATTAAAAAGGAACTGTTGTAGTTGTAG 2624
|||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 2561 GTGAGTTGTGTAGATGTGTTGATTAAAATGTAACTGTTGTAGTTGTAG 2608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130283550971
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5