BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495207
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51370.2 | Symbols: | RNI-like superfamily protein | chr5:2... 2087 0.0
AT5G51380.1 | Symbols: | RNI-like superfamily protein | chr5:2... 1424 0.0
> AT5G51370.2 | Symbols: | RNI-like superfamily protein | chr5:20872763-20874249
FORWARD LENGTH=1418
Length=1418
Score = 2087 bits (1130), Expect = 0.0
Identities = 1298/1380 (94%), Gaps = 8/1380 (1%)
Strand=Plus/Plus
Query 1 AACAAGAAATGTCTGAATTTGATAAGCATGTCCTAAATCACAACAAAAATGAGAAGCCTT 60
||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct 13 AACAAGAAATGTCTGAATTTGATAAGCATGTCCAAAACCACATCAAAAATGAGAAGCCTT 72
Query 61 TC-AGTCAAATCAAATCC-TCAGAAATCGATTCAACTCTCTCTTTATCCGATTCTCTTCT 118
|| | || ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 73 TCAATTC-AATCAAA-CCTTCAGAAATCGATTCAACTCTCTCTTTATCCGATTCTCTTCT 130
Query 119 CCTCAAGATCCTTGAGAAGCTTCCTGAATCACAGAGCAACGATGTCTCACTTGTCTGCAA 178
|||||||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 131 CCTCAAGATCATCGAGAAGCTTCCTGAATCACAGAGCAACGACGTCTCACTCGTCTGCAA 190
Query 179 ACGGTGGTTGAATCTTCAGGGACGTCGTTTACGGAGTCTAAAGGTTCTTGATTTTGATTT 238
||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 191 ACGCTGGTTGAATCTTCAGGGACAACGTTTACGGAGTCTAAAGCTTCTTGATTTTGATTT 250
Query 239 TGTCTTGTCTGAGAGACTTACCACGAGATTCCCCAAGCTCACGCATGTCGATTTGGTTAA 298
| |||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||
Sbjct 251 TCTCTTGTCTGAGAGACTCACCACGAGATTCCCTAATCTCACGCATGTCGATTTGGTGAA 310
Query 299 CGCGTGTATGAATCCGCCGGTCAATTCGGGTATTTTGCTCTGTCACAAGTCGATTTGTAT 358
||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| | |
Sbjct 311 CGCGTGTATGAATCCGCGGGTCAATTCCGGTATTTTGTTCTGTCACAAGTCGATTTCTTT 370
Query 359 GCATTTATCTTCAGAGTCATCGAATTGGGAGTTTCTTGAGGAGAATTTATTGCACAGTGA 418
|||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 371 TCATTTATCTTCAGACTCGTCGAATTGGGAGTTTCTTGAGGAGAATCTATTGCACAGTGA 430
Query 419 CGTAATTGATAGAGGGCTTAGCG-TATTAAGCAGAGGGAATTGTGATTTGCTTAAACTTG 477
||||||||||||||||||||| | |||||||||||| || || |||||||||||| |||
Sbjct 431 CGTAATTGATAGAGGGCTTAG-GATATTAAGCAGAGAGAGTTTTGATTTGCTTAACCTTA 489
Query 478 TAGTGATTAACGCTACTGAATTGGGATTACTGAGTTTAGCTGAAGACTGTTCTGATTTGC 537
||||||||||||| |||||||||||||| |||||||||||| |||||| ||||||||||
Sbjct 490 AAGTGATTAACGCTTCTGAATTGGGATTATTGAGTTTAGCTGGAGACTGCTCTGATTTGC 549
Query 538 AAGAATTAGAATTGCATAAGTGTAATGATAATCTCTTGCATGGTATTGCTGCGTGTAAGA 597
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 550 AAGAGTTAGAATTGCATAAGTGTAATGATAATCTCTTGCATGGCATTGCTGCGTGTAAGA 609
Query 598 ATCTTAGAGCG-TTGAGGTTAGTTGGAAGCGTAGACGGATTGTATAGTTCATCGGTGTCG 656
|||| | || | ||||| || || ||||||||||||||||||||||||||||| ||||||
Sbjct 610 ATCTGA-AGGGATTGAGATTGGTAGGAAGCGTAGACGGATTGTATAGTTCATCTGTGTCG 668
Query 657 GATATAGGGTTAACGTTCTTAGCACAAGGGTGTAGGAGTTTGGTGAAGCTTGAGCTTAGT 716
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 669 GATATAGGATTAACATTCTTAGCACAAGGATGTAGGAGTTTGGTGAAGCTTGAGCTTAGT 728
Query 717 GGTTGTGAAGGTAGCTTTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GGTTGTGAAGGTAGCTTTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAG 788
Query 777 GAGCTGAGTATTTGTGACCATAGAATGGATGATGGTTGGATAGCTGCGCTTTCGTATTTT 836
||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 789 GAGTTGAGTATTTGTGACCATAGAATGGACGATGGTTGGATCGCTGCGCTTTCGTATTTT 848
Query 837 GAGAGTTTGAAGATATTGAGGATTTCGTCGTGTAGAAAGATAGACGCTAGTCCTGGACCG 896
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 849 GAGAGTTTGAAGATATTGAGGATTTCGTCTTGTAGAAAGATAGACGCTAGTCCTGGACCG 908
Query 897 GAAAAGTTGTTGCAGTCTTGTCCAGCTATGGAGAGTTTGCAACTCAAGAGGTGTTGTTTG 956
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 909 GAAAAGTTGTTGCGGTCTTGTCCTGCTATGGAGAGTTTGCAGCTCAAGAGGTGTTGTTTG 968
Query 957 AATGACAAGGAGGGGATGAGAGCGTTGTTTAAAGTGTGTGATGGAGCAACAGAGGTTAGT 1016
||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||| |
Sbjct 969 AATGACAAGGAGGGGATAAAAGCTTTGTTTAAAGTGTGTGATGGAGCAACAGAGGTTAAT 1028
Query 1017 ATTCAGGATTGCTGGGGATTGAGTGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGG 1076
||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||||||
Sbjct 1029 ATTCAGGATTGTTGGGGACTGAGTGATGATTGTTTCAGTTTGGCTAAAGCTTTCAGGAGG 1088
Query 1077 GTGAGGTTTCTGTCTTTGGAAGGATGCTCAGTCTTAACATCAGGCGGTTTAGAGTCGGTG 1136
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1089 GTGAGGTTTCTGTCTTTGGAAGGATGCTCAGTTTTAACATCAGGAGGTTTAGAGTCGGTG 1148
Query 1137 ATTTTACACTGGGAAGAGCTTGAGAGCATGAGAGTAGTGTCATGTAAAAGCATAAAAGAC 1196
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1149 ATTTTACATTGGGAAGAGCTTGAGAGTATGAGAGTAGTGTCATGTAAGAGCATAAAAGAC 1208
Query 1197 AGCGAAATTTCACCCGCGCTCTCGTCTTTGTTCTCACTTCTCAAAGAACTAACTTGGAGA 1256
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 AGCGAAATTTCACCAGCGCTCTCGTCTTTGTTCTCACTTCTCAAAGAACTAACTTGGAGA 1268
Query 1257 CCAGACACTAGGTCTCATCTCTCTTCGAGTCTTGAAGGTGCCGGGATTGGAAAGAGAGGC 1316
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1269 CCAGACACTAGGTCTCATCTCTCGTCGAGTCTTGAAGGTGCCGGGATTGGAATTAGAGGC 1328
Query 1317 AGCAAATTCTTCAAGAAGAGTGTTCTACATTGAACATATGTTGTGTAAGCGCAAACACTT 1376
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||
Sbjct 1329 AGCAAATTCTTCAAGAAGAGTGTTTTACATTGAACATATGTTGTGTAAGTGCAAACTCTT 1388
> AT5G51380.1 | Symbols: | RNI-like superfamily protein | chr5:20875876-20877989
FORWARD LENGTH=1719
Length=1719
Score = 1424 bits (771), Expect = 0.0
Identities = 1127/1296 (87%), Gaps = 36/1296 (3%)
Strand=Plus/Plus
Query 85 TCGATTC-AACTCTCTCTTTATCCGATTCTCTTCTCCTCAAGATCCTTGAGAAGCTTCCT 143
|||| || |||||| || || || ||||||||||| ||||||||||||||||||||||||
Sbjct 251 TCGA-TCGAACTCTTTCGTTGTCAGATTCTCTTCTTCTCAAGATCCTTGAGAAGCTTCCT 309
Query 144 GAATCACAGAGC-AACGATGTCTCACTTGTCTGCAAACGGTGGTTGAATCTTCAGGGACG 202
||||| |||| | || ||||| ||||| || || ||||||||||||| | ||||||||||
Sbjct 310 GAATCTCAGAACGAA-GATGTTTCACTCGTGTGTAAACGGTGGTTGAGTGTTCAGGGACG 368
Query 203 TCGTTTACGGAGTCTAAAGGTTCTTGATTTTG-ATTTTGTCTTGTCTGAGAGACTTACCA 261
|||||||||||| | |||||| |||||| | ||||| | ||||||| ||| |||
Sbjct 369 GCGTTTACGGAGTATGAAGGTTTTTGATTGGGAATTTT-TATTGTCTGGGAGGCTTGTTT 427
Query 262 CGAGATTCCCCAAGCTCACGCA-TGTCGATTTGGTTAACGCGTGTATGAATCCGCCG-GT 319
|||| || || ||||| ||| | ||| |||||||||||||||||| | |||||| || |
Sbjct 428 CGAGGTTTCCTAAGCTTACG-AGTGTTGATTTGGTTAACGCGTGTTTCAATCCGTCGAG- 485
Query 320 CAATTC-GGGTATTTTGCTCTGTCACAAGTCGATTT-GTATGCATTTATCTTCAGA---G 374
|||||| ||| |||||||| ||||| | |||||||| || | ||| |||| | || |
Sbjct 486 CAATTCAGGG-ATTTTGCTATGTCATACGTCGATTTCGT-TTCATGTATCAACCGATTCG 543
Query 375 TCATCGAATTGGGAGTTTCTTGAGGAGAATTTATTGCACAGTGACGTAATTGATAGAGGG 434
|| | ||||| | | ||| ||||||||| | | ||| | | ||| | |||||| ||||
Sbjct 544 TCGTTGAATTTGAATTTTGTTGAGGAGAGTCTGTTGGATAATGAAATGGTTGATAAAGGG 603
Query 435 CTTAGCGTATTAAGCAGAGGGAATTGTGATTTGCTTAAACTTGTAGTGATTAACGCTACT 494
||||| || ||| | ||||||| || ||||||| |||| |||||||||||||| ||||||
Sbjct 604 CTTAGGGTTTTAGGAAGAGGGAGTTTTGATTTGATTAAGCTTGTAGTGATTAATGCTACT 663
Query 495 GAATTGGGATTACTGAGTTTAGCTGAAGACTGTTCTGATTTGCAAGAATTAGAATTGCAT 554
||||||||||| |||||||||||||| || ||||| |||||||| || ||||| ||||||
Sbjct 664 GAATTGGGATTGCTGAGTTTAGCTGAGGATTGTTCGGATTTGCAGGAGTTAGAGTTGCAT 723
Query 555 AAGTGTAATGATAATCTCTTGCATGGTATTGCTGCGTGTAAGAATCTTAGAGCG-TTGAG 613
||||||| ||||||||||||| |||||||||||| ||| ||||||| || | | |||||
Sbjct 724 AAGTGTAGCGATAATCTCTTGCGTGGTATTGCTGCTTGTGAGAATCTGAG-GGGATTGAG 782
Query 614 GTTAGTTGGAAGCGTAGACGGATTGTATAGTTCATCGGTGTCGGATATAGGGTTAACG-T 672
|| |||||||| || || |||||||||||||||||||| || ||||| || || ||| |
Sbjct 783 ATTGGTTGGAAGTGTTGATGGATTGTATAGTTCATCGGTTTCTGATATTGGTTTGACGAT 842
Query 673 TCTTAGCACAAGGGTGTAGGAGTTTGGTGAAGCTTGAGCTTAGTGGTTGTGAAGGTAGCT 732
| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
Sbjct 843 T-TTAGCACAAGGGTGTAAGAGATTGGTGAAGCTTGAGCTTAGTGGTTGTGAAGGTAGTT 901
Query 733 TTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAGGAGCTGAGTATTTGTG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAGGAGCTGAGTATTTGTG 961
Query 793 ACCATAGAATGGATGATGGTTGGATAGCTGCGCTTTCGTATTTTGAGAGTTTGAAGA-TA 851
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 962 ATCATAGAATGGATGATGGTTGGATAGCTGCGCTTTCGTATTTTGAGAGTTTGAAGACT- 1020
Query 852 TTGAGGATTTCGTCGTGTAGAAAGATAGACGCTAGTCCTGGACCGGAAAAGTTGTTGC-A 910
||| ||||||||| |||||||||||||| ||||||||||||||| ||||||| || |
Sbjct 1021 TTGTTGATTTCGTCTTGTAGAAAGATAGATTCTAGTCCTGGACCGGGAAAGTTGCTGGGA 1080
Query 911 GTCTTGTCCAGCTATGGAGAGTTTGCAACTCAAGAGGTGTTGTTTGAATGACAAGGAGGG 970
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 -TCTTGTCCAGCTCTGGAGAGTTTGCAACTCAGGAGGTGTTGTTTGAATGACAAGGAGGG 1139
Query 971 GATGAGAGCGTTGTTTAAAGTGTGTGATGGAGCAAC-AGAGGTTAGTATTCAGGATTGCT 1029
|||||||||||||||||| ||||||||||||| ||| | |||||| |||||||||||| |
Sbjct 1140 GATGAGAGCGTTGTTTAAGGTGTGTGATGGAGTAACTA-AGGTTAATATTCAGGATTGTT 1198
Query 1030 GGGGATTG-AGTGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGAGGTTTCTG 1088
|||||||| | |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1199 GGGGATTGGA-TGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGCGGTTTTTA 1257
Query 1089 TCTTTGGAAGGATGCTCAGTCTTAACATCAGGCGGTTTAGAGTCGGTGATTTTACACTGG 1148
|||||||||||||||||| || ||||| || ||||||||||||| || ||| ||||||||
Sbjct 1258 TCTTTGGAAGGATGCTCAATCCTAACAACAAGCGGTTTAGAGTCAGTAATTCTACACTGG 1317
Query 1149 GAAGAGCTTGAGAGCATGAGAGTAGTGTCATGTAA-AAGCATAAAAGACAGCGAAATTTC 1207
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1318 GAAGAGCTTGAGAGCATGAGAGTAGTATCATGTAAGAA-CATAAAAGACAGCGAAATTTC 1376
Query 1208 ACCCGCGCTCTCGTCTTTGTTCTCACTTCTCAAAGAACTAACTTGGAGACCAGACACTAG 1267
| |||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 1377 AGCCGCACTCTCGTCTTTGTTCTCCCTTCTCAAAGAACTAACGTGGAGACCGGACACAAG 1436
Query 1268 GTCTCATCTCTCTTCGAGTCTTGAAGGTGCCGGGATTGGAAAGAGAGGCAGCAAATTCTT 1327
|||||||||||| || |||||||||||| |||| ||||| |||||||| |||||||||||
Sbjct 1437 GTCTCATCTCTCATCCAGTCTTGAAGGTACCGGAATTGGTAAGAGAGGTAGCAAATTCTT 1496
Query 1328 CAAGAAGAG-TG-T-T-CTACATTGAACATA-TGTT 1358
||||||||| || | | |||||||||||||| ||||
Sbjct 1497 CAAGAAGAGATGATGTTCTACATTGAACATAATGTT 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67770735750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5