BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495209
Length=1704
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51380.1 | Symbols: | RNI-like superfamily protein | chr5:2... 2488 0.0
AT5G51370.2 | Symbols: | RNI-like superfamily protein | chr5:2... 1303 0.0
> AT5G51380.1 | Symbols: | RNI-like superfamily protein | chr5:20875876-20877989
FORWARD LENGTH=1719
Length=1719
Score = 2488 bits (1347), Expect = 0.0
Identities = 1594/1712 (93%), Gaps = 21/1712 (1%)
Strand=Plus/Plus
Query 1 GTTTGTAATCCGCCGCTAAATCAAACCagagagagagagagaTCCAATCCAACGTGAAGA 60
||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 1 GTTCGTAATCCGCCGCTAAATCAAACCAGCGAGAGAGATAG-----ATCCAACGTGAAGA 55
Query 61 AGAAATCGAAAACGATGTCGTTTATGGAGAAGTTACCGACGAGTCCCAAATCGCCTCTGA 120
||||||||||||||||| |||||| |||||| | ||||||||||| |||||||||||||
Sbjct 56 AGAAATCGAAAACGATGACGTTTAGGGAGAAAATGCCGACGAGTCCTAAATCGCCTCTGA 115
Query 121 GAAGACGACGTTCAAGCTGGACCGGTCCATGGTTAAACCACCCCACGACGTCGTTCAAGC 180
||||||||||||| |||||||||||| ||||||||||||| | ||||||||||| ||||
Sbjct 116 GAAGACGACGTTCGAGCTGGACCGGTACATGGTTAAACCATCAGACGACGTCGTTTAAGC 175
Query 181 AAGTAGTCTCCGCCGTTATCCAAGCTCAATCACCAAGATCCAGGTTCAAATCCCTCTCCT 240
||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| || |
Sbjct 176 AAGCAGTCTCCGCCGTTATTCAAGCTCAATCACCAAGATCCAGGTTTAAATCCCTATCTT 235
Query 241 CTGATTTCTCCGACGTCGATCGAACACTTTCCTTGTCAGATTCTCTCCTTCTTAAGATCC 300
||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct 236 CTGATTTCTCCGACGTCGATCGAACTCTTTCGTTGTCAGATTCTCTTCTTCTCAAGATCC 295
Query 301 TTGAGAAGCTTCCTGAATCTCAGAAC-AACGATGTGGCACTCGTGTGTAAACGGTGGTTG 359
|||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 296 TTGAGAAGCTTCCTGAATCTCAGAACGAA-GATGTTTCACTCGTGTGTAAACGGTGGTTG 354
Query 360 TGTCTACAAGGACGGCGTTGGA-GGAGAATGAAGGTTTTTGATTGGGATTTTGTTA-TGT 417
|| | || |||||||||| | |||| |||||||||||||||||||| ||| ||| |||
Sbjct 355 AGTGTTCAGGGACGGCGTT-TACGGAGTATGAAGGTTTTTGATTGGGAATTT-TTATTGT 412
Query 418 CTGGGAGGCTTGTTTCGAGGTTTCCTAAGCTTACGAATGTTGATTTGGTTAACGCGTGTT 477
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 413 CTGGGAGGCTTGTTTCGAGGTTTCCTAAGCTTACGAGTGTTGATTTGGTTAACGCGTGTT 472
Query 478 TGAATCCGTTGAGGAATTCAGGGATTTTGCTATGTCATAAGTCGATTTCGTTTCATATAT 537
| ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 473 TCAATCCGTCGAGCAATTCAGGGATTTTGCTATGTCATACGTCGATTTCGTTTCATGTAT 532
Query 538 CGACCGATTCGTCGTCGAATTGGGATTTTGTTGAGGAGAATCTGTTGGATAATGAAATGG 597
| ||||||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 533 CAACCGATTCGTCGTTGAATTTGAATTTTGTTGAGGAGAGTCTGTTGGATAATGAAATGG 592
Query 598 TTGATCGAGGGCTTAGGGTATTAGGAAGAGGGAGTTTTGATTTGCTTAAGCTTGTAGTGA 657
||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 593 TTGATAAAGGGCTTAGGGTTTTAGGAAGAGGGAGTTTTGATTTGATTAAGCTTGTAGTGA 652
Query 658 TTAATGCTACTGAATTGGGATTACTGAGTTTAGCTGAGGACTGTTCTGATTTGCAGGAGT 717
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 653 TTAATGCTACTGAATTGGGATTGCTGAGTTTAGCTGAGGATTGTTCGGATTTGCAGGAGT 712
Query 718 TAGAGTTGCATAAGTGTAGTGATAATCTCTTGCGTGGTATTGCTGCTTGTGAGAATCTGA 777
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TAGAGTTGCATAAGTGTAGCGATAATCTCTTGCGTGGTATTGCTGCTTGTGAGAATCTGA 772
Query 778 GGGGTTTGAGATTGGTTGCAAGTGTTGACGGATTGTATAGTTCATCGGTTTCGGATATAG 837
|||| ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 773 GGGGATTGAGATTGGTTGGAAGTGTTGATGGATTGTATAGTTCATCGGTTTCTGATATTG 832
Query 838 GTTTGACAATTTTAGCACAAGGGTGTAAGAGATTGGTGAAGCTGGAGCTTAGTGGTTGTG 897
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 833 GTTTGACGATTTTAGCACAAGGGTGTAAGAGATTGGTGAAGCTTGAGCTTAGTGGTTGTG 892
Query 898 AAGGTAGTTTTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAATGCTTGATGAGCTGA 957
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 893 AAGGTAGTTTTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAGGAGCTGA 952
Query 958 CTATTTGTGACCATAGAATGGATGATGGTTGGATTGCGGCGCTTTCGTACTTTGAGAGTT 1017
||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 953 GTATTTGTGATCATAGAATGGATGATGGTTGGATAGCTGCGCTTTCGTATTTTGAGAGTT 1012
Query 1018 TGAAGACATTG-AGAATTTCTTCTTGTAGAAAGATAGATTCTAGTCCTGGACCGGAAAAG 1076
||||||| ||| | ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1013 TGAAGACTTTGTTG-ATTTCGTCTTGTAGAAAGATAGATTCTAGTCCTGGACCGGGAAAG 1071
Query 1077 TTGCTGGGATCTTGTCCAGCTCTGGAGAGTTTGCAACTCAAGAGGTGTTGTTTGAATGAC 1136
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1072 TTGCTGGGATCTTGTCCAGCTCTGGAGAGTTTGCAACTCAGGAGGTGTTGTTTGAATGAC 1131
Query 1137 AAGCAGGGGATGAGAGCGTTGTTTAAGGTGTGTGATGGAGTAACTAAGGTTAATATTCAT 1196
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 AAGGAGGGGATGAGAGCGTTGTTTAAGGTGTGTGATGGAGTAACTAAGGTTAATATTCAG 1191
Query 1197 GATTGTTGGGGATTGGATGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGCGG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GATTGTTGGGGATTGGATGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGCGG 1251
Query 1257 TTTTTATCTTTGGAAGGATGCTCAGTCCTAACAACAAGCGGTTTAGAGTCAGTAATTCTA 1316
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1252 TTTTTATCTTTGGAAGGATGCTCAATCCTAACAACAAGCGGTTTAGAGTCAGTAATTCTA 1311
Query 1317 CACTGGGAAGAGCTTGAGAGCATGAGAGTAGTATCATGTAAGAACATAAAAGACAGTGAA 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1312 CACTGGGAAGAGCTTGAGAGCATGAGAGTAGTATCATGTAAGAACATAAAAGACAGCGAA 1371
Query 1377 ATTTCAGCGGCACTCTCGTCTCTGTTCTCCCTTCTCAAAGAACTAACGTGGAGACCGGAC 1436
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1372 ATTTCAGCCGCACTCTCGTCTTTGTTCTCCCTTCTCAAAGAACTAACGTGGAGACCGGAC 1431
Query 1437 ACAAGGTCTCATCTCTCATCGAGTCTAGAAGGTGCGGGAATTGGAAAGAGAGGTAGCAAA 1496
|||||||||||||||||||| ||||| |||||| | |||||||| |||||||||||||||
Sbjct 1432 ACAAGGTCTCATCTCTCATCCAGTCTTGAAGGTACCGGAATTGGTAAGAGAGGTAGCAAA 1491
Query 1497 TTCTTCAAAAAGAGATGATGTTC-A-ATGTAGAACATA-TGTTTTGTAATGAAAATGTAG 1553
|||||||| |||||||||||||| | || | ||||||| |||| | ||||| || ||||
Sbjct 1492 TTCTTCAAGAAGAGATGATGTTCTACAT-T-GAACATAATGTTATATAATGTAA-TGTAA 1548
Query 1554 GTGCTCGCATTTCATGTGCCCTGAAAATTCTTATATACACAAACTCT-CTTCTTCTCCGG 1612
|| ||||||| |||||||||||||||||||||||| ||||||||||| ||| || | |||
Sbjct 1549 GTCCTCGCATCTCATGTGCCCTGAAAATTCTTATACACACAAACTCTTCTTATTGTACGG 1608
Query 1613 GCATTATTACTCTGTTGTAAAATCTGCCAAATTTGTAGTCAAATGTTCAAAACGCTTATG 1672
|||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 1609 GCATTATTACTCTGTTGTAAAATCTGCCAAATTTGTAGTCAA-TGTTCAAACCTCTTATG 1667
Query 1673 TATTGCAATGTTCTGTTGTTATGTATAATAAT 1704
|| ||||||||||| |||||||||||||||||
Sbjct 1668 TACTGCAATGTTCTATTGTTATGTATAATAAT 1699
> AT5G51370.2 | Symbols: | RNI-like superfamily protein | chr5:20872763-20874249
FORWARD LENGTH=1418
Length=1418
Score = 1303 bits (705), Expect = 0.0
Identities = 1111/1306 (85%), Gaps = 32/1306 (2%)
Strand=Plus/Plus
Query 256 TCGA-TCGAACACTTTCCTTGTCAGATTCTCTCCTTCTTAAGATCCTTGAGAAGCTTCCT 314
|||| || ||| || || || || |||||||| || || |||||| | ||||||||||||
Sbjct 97 TCGATTC-AACTCTCTCTTTATCCGATTCTCTTCTCCTCAAGATCATCGAGAAGCTTCCT 155
Query 315 GAATCTCAGAACAACGATGTGGCACTCGTGTGTAAACGGTGGTTGTGTCTACAAGGACGG 374
||||| |||| |||||| || ||||||| || ||||| |||||| ||| || ||||
Sbjct 156 GAATCACAGAGCAACGACGTCTCACTCGTCTGCAAACGCTGGTTGAATCTTCAGGGACAA 215
Query 375 CGTTGGA-GGAGAATGAAGGTTTTTGATTGGGATTTTGT-TATGTCTGGGAGGCTTGTTT 432
|||| | |||| | ||| || |||||| |||||| | | |||||| ||| ||
Sbjct 216 CGTT-TACGGAGTCTAAAGCTTCTTGATTTTGATTTTCTCT-TGTCTGAGAGACTCACCA 273
Query 433 CGAGGTTTCCTAAGCTTACGAATGTTGATTTGGTTAACGCGTGTTTGAATCCGTTGAGG- 491
|||| || ||||| || ||| |||| |||||||| ||||||||| |||||||| | ||
Sbjct 274 CGAGATTCCCTAATCTCACGCATGTCGATTTGGTGAACGCGTGTATGAATCCG-CG-GGT 331
Query 492 -AATTCAGGGATTTTGCTATGTCATAAGTCGATTTCGTTTCATATATCGACCGATTCGTC 550
||||| || |||||| | ||||| ||||||||||| |||||| |||| | || | ||
Sbjct 332 CAATTCCGGTATTTTGTTCTGTCACAAGTCGATTTCTTTTCATTTATCTTCAGA--C-TC 388
Query 551 GTCGAATTGGGATTTTGTTGAGGAGAATCTGTTGGATAATGAAATGGTTGATCGAGGGCT 610
|||||||||||| ||| ||||||||||||| ||| | | ||| | ||||| |||||||
Sbjct 389 GTCGAATTGGGAGTTTCTTGAGGAGAATCTATTGCACAGTGACGTAATTGATAGAGGGCT 448
Query 611 TAGGGTATTAGGAAGAGGGAGTTTTGATTTGCTTAAGCTTGTAGTGATTAATGCTACTGA 670
|||| ||||| | |||| |||||||||||||||||| ||| ||||||||| ||| ||||
Sbjct 449 TAGGATATTAAGCAGAGAGAGTTTTGATTTGCTTAACCTTAAAGTGATTAACGCTTCTGA 508
Query 671 ATTGGGATTACTGAGTTTAGCT-GAGGACTGTTCTGATTTGCAGGAGTTAGAGTTGCATA 729
|||||||||| ||||||||||| || ||||| ||||||||||| |||||||| |||||||
Sbjct 509 ATTGGGATTATTGAGTTTAGCTGGA-GACTGCTCTGATTTGCAAGAGTTAGAATTGCATA 567
Query 730 AGTGTAGTGATAATCTCTTGCGTGGTATTGCTGCTTGTGAGAATCTGAGGGGTTTGAGAT 789
|||||| |||||||||||||| ||| |||||||| ||| ||||||||| ||| |||||||
Sbjct 568 AGTGTAATGATAATCTCTTGCATGGCATTGCTGCGTGTAAGAATCTGAAGGGATTGAGAT 627
Query 790 TGGTTGCAAGTGTTGACGGATTGTATAGTTCATCGGTTTCGGATATAGGTTTGACAATT- 848
|||| | ||| || |||||||||||||||||||| || ||||||||||| || || |||
Sbjct 628 TGGTAGGAAGCGTAGACGGATTGTATAGTTCATCTGTGTCGGATATAGGATTAAC-ATTC 686
Query 849 TTAGCACAAGGGTGTAAGAGATTGGTGAAGCTGGAGCTTAGTGGTTGTGAAGGTAGTTTT 908
||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 687 TTAGCACAAGGATGTAGGAGTTTGGTGAAGCTTGAGCTTAGTGGTTGTGAAGGTAGCTTT 746
Query 909 GATGGGATTAAAGCAATTGGGCAATGTTGTGAAATGCTTGATGAGCTGACTATTTGTGAC 968
||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||
Sbjct 747 GATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAGGAGTTGAGTATTTGTGAC 806
Query 969 CATAGAATGGATGATGGTTGGATTGCGGCGCTTTCGTACTTTGAGAGTTTGAAGACATTG 1028
||||||||||| ||||||||||| || ||||||||||| |||||||||||||||| ||||
Sbjct 807 CATAGAATGGACGATGGTTGGATCGCTGCGCTTTCGTATTTTGAGAGTTTGAAGATATTG 866
Query 1029 AGAATTTCTTCTTGTAGAAAGATAGATTCTAGTCCTGGACCGGAAAAGTTGCTG-GGATC 1087
|| ||||| ||||||||||||||||| ||||||||||||||||||||||| || || ||
Sbjct 867 AGGATTTCGTCTTGTAGAAAGATAGACGCTAGTCCTGGACCGGAAAAGTTGTTGCGG-TC 925
Query 1088 TTGTCCAGCTCTGGAGAGTTTGCAACTCAAGAGGTGTTGTTTGAATGACAAGCAGGGGAT 1147
|||||| ||| ||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 926 TTGTCCTGCTATGGAGAGTTTGCAGCTCAAGAGGTGTTGTTTGAATGACAAGGAGGGGAT 985
Query 1148 GAGAGCGTTGTTTAAGGTGTGTGATGGAGTAACTA-AGGTTAATATTCATGATTGTTGGG 1206
| ||| |||||||| ||||||||||||| ||| | ||||||||||||| ||||||||||
Sbjct 986 AAAAGCTTTGTTTAAAGTGTGTGATGGAGCAAC-AGAGGTTAATATTCAGGATTGTTGGG 1044
Query 1207 GATTG-GATGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGCGGTTTTTATCT 1265
|| || | |||||||| |||||| |||||||||||||||||||||||| ||||| | |||
Sbjct 1045 GACTGAG-TGATGATTGTTTCAGTTTGGCTAAAGCTTTCAGGAGGGTGAGGTTTCTGTCT 1103
Query 1266 TTGGAAGGATGCTCAGTCCTAACAACAAGCGGTTTAGAGTCAGTAATTCTACACTGGGAA 1325
||||||||||||||||| ||||| || | ||||||||||| || ||| |||| ||||||
Sbjct 1104 TTGGAAGGATGCTCAGTTTTAACATCAGGAGGTTTAGAGTCGGTGATTTTACATTGGGAA 1163
Query 1326 GAGCTTGAGAGCATGAGAGTAGTATCATGTAAGAACATAAAAGACAGTGAAATTTCAGCG 1385
||||||||||| ||||||||||| |||||||||| |||||||||||| ||||||||| |
Sbjct 1164 GAGCTTGAGAGTATGAGAGTAGTGTCATGTAAGAGCATAAAAGACAGCGAAATTTCACCA 1223
Query 1386 GCACTCTCGTCTCTGTTCTCCCTTCTCAAAGAACTAACGTGGAGACCGGACACAAGGTCT 1445
|| ||||||||| ||||||| ||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1224 GCGCTCTCGTCTTTGTTCTCACTTCTCAAAGAACTAACTTGGAGACCAGACACTAGGTCT 1283
Query 1446 CATCTCTCATCGAGTCTAGAAGGTGC-GGGAATTGGAAAGAGAGGTAGCAAATTCTTCAA 1504
|||||||| |||||||| |||||||| |||| |||||| ||||| ||||||||||||||
Sbjct 1284 CATCTCTCGTCGAGTCTTGAAGGTGCCGGGA-TTGGAATTAGAGGCAGCAAATTCTTCAA 1342
Query 1505 AAAGAGATGATGTT-CAATGTAGAACATATGTTTTGTAA-TGAAAA 1548
||||| || | || || | | ||||||||||| ||||| || |||
Sbjct 1343 GAAGAG-TGTT-TTACA-T-T-GAACATATGTTGTGTAAGTGCAAA 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84236514510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5