BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495210
Length=474
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51390.1 | Symbols: | unknown protein; Has 30201 Blast hits... 741 0.0
> AT5G51390.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:20877967-20878464
REVERSE LENGTH=498
Length=498
Score = 741 bits (401), Expect = 0.0
Identities = 439/457 (96%), Gaps = 3/457 (1%)
Strand=Plus/Plus
Query 1 AAGTAACGATAACTACGAAATTAGGTACACAAGTCTCTGCCCTACGTTTTA-TGATTAGA 59
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1 AAGTAACGATAACTACGAAATTAGGTATACAAGTCTCTGCCCTACGTTTTATTGATTAGA 60
Query 60 TGATACAAAGGACCACTTCAACCCCAGAGAAGATGATCGGAGGAAAGATTCCGGAGTCAC 119
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 61 TGATACAAAGGACCACTTCATCCCCAGAGAAGATGATCGGAGGAAAGATTCCTGAATCAC 120
Query 120 GAGTTTCTGCATCACTGCCATGTTTTTC-GGCGAGTGTTGAAGGGTTACGTAGACGGAAG 178
|||||||||||||||| ||||| ||||| |||||||| |||||||||| || ||||||||
Sbjct 121 GAGTTTCTGCATCACTACCATG-TTTTCAGGCGAGTGCTGAAGGGTTAAGTCGACGGAAG 179
Query 179 AGTTTAGCTGAAGCGGGGAAGAGAGATATCTTCTACGGAGAAGATGACGTGGCAGATTTG 238
|| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 180 AGCTTAGCTGAAGCCGGGAAGAGAGATATCTTCTATGGAGAAGATGACGTGGCAGACTTG 239
Query 239 ATGTTTAGAGAAGAGGAAGTGGAACAAGACACGGTCATGAGAGCTTATAGAAGTAACGAG 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATGTTTAGAGAAGAGGAAGTGGAACAAGACACGGTCATGAGAGCTTATAGAAGTAACGAA 299
Query 299 GCTATGAAATCGATCCAAGATACGAGACGAAGACAAAGAAGGTTCTTTTGTTTTGAATGT 358
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTATGAAATCTATCCAAGATACGAGACGAAGACAAAGAAGGTTCTTTTGTTTTGAATGT 359
Query 359 TTTGACTTTCTCAAACtttttttCTCTAGAGATCGAAACTAATAACCCTAACAACAAACA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTGACTTTCTCAAACTTTTTTTCTCTAGAGATCGAAACTAATAACCCTAACAACAAACA 419
Query 419 ATGTTTCTTGTATCTCTTTATCTTGTAAATTCTTTAG 455
||||||||||||| |||||||||||||||||||||||
Sbjct 420 ATGTTTCTTGTATTTCTTTATCTTGTAAATTCTTTAG 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22555132003
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5